RNA id: XM_022669212.1


Basic Information

Item Value
RNA id XM_022669212.1
length 6060
RNA type mRNA
GC content 0.43
exon number 20
gene id eef2k
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17097309 ~ 17116008 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTAATGTTACTGCCCCCACCTCCCTGAAAGTGCATTCAAAAACAGGCAGCAGGGCaggcagagctgctgctgctgcggctggGGGAGGAGGACACGTTGCACCTTTGAATGGGACGAGAGCTGTTTCAGGGATAGTCAGTCACACAGTGCAGCTGAAATTTCCCTTGAAACGAAGAGCTCAAATCAACAAGCGTTCACAGGATTTAACGCACCTGCACCTGGGCCTGGACagcagagaaaggaagagaagaagCTCCACCTGTGAACGACAGACATGCCTTCTTCCCGTGAATAGCCTGGTTTATACAAGCCAAAGCTGTCAACAATCCTGCAAGTTCcagcctgtcactcactcaGTAACACCAACAACAACACCATGGCAGACGACGAGCTGATGTTCAGTATGGAGGAGGTGGGCAGCCTAAAAAGGAGTAGTGGTGAACGGGTTGTGCGTTTTGGACGCGACCCTTCAGTTGATGATGACGATGACGACTTCTACATCTGCCCCATCACTGATGACCCTGTCAGTCCTACTAAGGAAATTTGCGATTACCTCAAGAACATTGCCAACAACAGGCAGCTTTCTAACTCCCTGCCCAAAAACTCTTTCACTTACAAGAACAAAAATAAGGAGCCAGAGGTGCGATCGGTCAGGTTTGGTTCTTTAACTGAGAAAGGTCGGGCCACTTGGAAACATGCTATTGAAAAAGCTAGAGCTATGCCAGACCCCTGGGCCGAGTTCCATTTGGAAGAAGTTGAGACTGAGCCCTGCATTAGATACAGGTATAATGCCATTACAGGTGACTGGGTACAGGACCAAGTGTTCATTAAGATGTCCTCTCAGCCTTTTGGAAAAGGGGCCATGAGAGAGTGCTACCGAACaaAGAAGTTGTCAAACTTCTCTCACAGCAGCAACTGGAAATGTGCCTCAAACTATGTGGCTAAGCGGTACATGGAGACTGTGGACAGAGACGTTTACTTTGAGGATGTAAGGTTACAAATGGAAGCTAAATTGTGGGGTGAGGAGTACAATCGCCACAGGCCTCCAAAACAGGTGGACATTATGCAGATGTGTGTTGTGGAAATGGCATCTCGCCCAGGGAAACCACTTTACCACCTGGAGCACTACATCGAGGGGCAGTACATCAAATACAATTCCAACTCTGGCTTCGTGAGGGATGATAATATACGGCTCACACCCCAGGCATTCAGTCACTTCACATTCGAGCGCTCTGGTCACCAGCTGATAGTTGTGGACATTCAGGGAGTTGGCGATCTCTACACAGACCCTCAGATCCACACAGAGAAGGGAACAGACTTTGGTGATGGCAACTTGGGTGTTCGTGGCATGGCCCTGTTCTTCCACTCTCACCTATGTAACAAGATCTGTAAGAGTATGGGTCTCACACCTTTTGATGTGGCCCCTGCAGAAAGCACTCAGCTGGACTGCACCAATAAGCTGCTGCAGTCAGCCAAGACCATGCTCCGTGGCTGTGAGGAACAGTGTGGTTCCCCCAGGGTTCGGACCACCTCTTTCACCCATGTGTCCCCTCATCTCTCCCGCCTTTCGGAAACCTCCTCAGCTGATGAGAACCTCAGTGATGCAGAATCAGTTCCCTGCTCTCCCCTTAGTCTCGGCGTCTCTGTGGACCGATCGCCATTGGGTTGGTCATTCATGAATGAAATGAACGAAGGAGACAGAAACAACACAGACCACAAGGCTTCAGACAGTGGAGGAGACAGTGGATACCCCAGTGAAAGACGCAGTGAAGGAGACCTGGCTGAACATCATGACCggGCTCGACCCGCCTACAACAGACATTATTCCGAATCGGATGAAGACAGTGTTCGCAGGCAGAAAGCGGTGCTTAATGCCAGCAAGCTGTCCCTTACTGTAAACAGCCCTGACTCTCACACGCTCACAGAGGAAAAATGGAGTTTCTTCCATTCATCCCGTGCCCATATTCACAGACCCTCCTGTGTAGCAGTAGAGGTGGAGAGATTGAACAATCTGATGCTTGAAAGGAAAATCGGCAAGTCTGTTTTGGGCAAGGTTCACCTAGCCATGGTCCGGTACCATGAGGCCGGAAGATTCTGTGAGAAGGATGCACCATGGGACCAGAAGTCAGCTTTGTATCATTTGGAAAGGGCAGCCATGTGTGGCGAGCTGGAGGCTATTGTAGCTCTTGGCCAGTGCTATCTGCAGCTGCCACATCACATTCTATCTGAGCTCGAACTGGAGGACAGTGATGAGAACAGAAAGAAAGGCTTCCGTTTTCTACTTCAGGCGGCTGAAGCTGGAGACAGACCCAGCATGATGTTAGTGGCCAGAGCGTTTGACACAGGCATCAACCTCCCATCTGACAGGACTCAGGACTGGGAGGAAGCCGTGCAGTGGTATGATTGTGTTTTGAATATGACAGACTATGATGAGGGTGGAGAGTTTGACGGTATGCAGGATGACCCACGATATCTTCTACTCGCTCGTGAAGCTGAACTGTTTCAGATGGGAGGGTTTAACCTAACAGCAGACCCTCAGAGAGCAGGTGATCTGTTCACTGAGGCAGCTGAAGCAGCCATGGAGGCAATGAAAGGCAGACTGGCTAATCAGTACTATATGAAGGCTGAGGAGGCTTGGTCAGCTATGGAGGAGTAAAGGAGCTGATTTGTTTTCCCAAGACTGTTAtcacttttaatatttaactctGGGATATGTTTACATGGTCCTTTACAACATAATACTTTCAGAATGCTGTGATGTTCTTTTAAAGCAGATACACACAGATGCTTCTGTGAATGTTTGAAAGGTCTGCATTATGAGCTAGTTAAATTTCACACCACTGCCAGCAAAACAGGAAGGAAATGAATCTAAGAAGAATAAGACCCACATGCAAAACACTTCAGTAGCAGCATCAGCAATAGCATCATTCCGCTTGTTGCTTTTTCTTGTCATGGTCCAGAAAGTAGCCGGTAGAGCTGTAACGGTTTTGTGGTTCTTCAGGTCACGGTTTGGCGCATGGTGTGCATGATATGATTgtacttttatttgtttgtttgtttgtctgtctttcttgcTAAGGGCACTTGGACAAGCCCCTACTTCTCATGCATGCAAATTGAACGCTAAATTGGTGTCAAATTGGGCTCCTTTTAGCACACAGCTGCAAAGATCAGCACTTTCCACCTGTAGTCACATCCCAAATGCCTTGCTGTTTACATGGGTTAAATTAGGTGTGCTAAATGAGGTGGAACACTGCGGTGTTTTCCTCATATGGGTGCAGCACTTTATATATGGCAAggctgtttacacctggcattaacatGAGTTTCTTATCTAGTTAGTATTTGGACATACTTTGGCCAGATTCTGTCTTGTTTACACTTTCCACAAAAATGCATCCCCGGTGTGGGCTGGTGGCATTCAATTTCACTTTCTCCAAAGTTTTAAATTTTAGATTTAGTGATTGACCATCTACTGGCACATGCGCATTATTGAGATTACACAAAGAGAAACCAGTATCTATTATGGTAAAAAGCACTTGTGTTAACTTTTTCAGTTAATGCATTTTAGCTTGCCCAACTGTATTTGGGAAACACATTCTGTTTGCATTTGGCTTAAATGCTTTTTAGATGTGTCTCCACCTCCAAATGTATGTTTTGATCACAGTCTGATCAAAATGTGGTCAAGTGATCACAGAAAACAAATTAGTTAAAGGTGGAAAAGGTTTCCTGAAATTCTCCTCTCATTTGACAGCACCCAGTTTATACTAAGAATGTAAAAACTGCCCCTATTGTACAAACTACAAATCCACATATCAAAATAAACAACTTTATtcaactttttaaacattttgaaaaataaatttgttgtattaaataaaaaaatattttttatgtgttttgagcTAACCATGCTTTAAACCGTGACTCAGAACCTTTAAACCAAAACAGTAAAAGGGGGGTAAAATTTGCTTTAAATTAAGATTGTTCCGCTGTATTTAACAGGTATGTTGATGGACCTTGAAAAATGCTTCATCTGACCAACTGTGTTGGTTGCATTAAGCTTGCATTCAGTCTGTTTAAATGTAAGGAAAgaactgaggtgtgtgtgtgtctgggtgtgTGTAAAGCTGAAGTCTGGATAGCTGGTGCTCCAGCTGTTTACAGTCAGATCTAGTCAGTATGTCAGATCTAGTCAGTATGTCAGATCTAGTCAGTCTAGCATGATAATGGACATTATCAGATATTACATAAGCCAGTAACAAGACTCTCCAATAGAAAAGGAAGTGATGACTAGCCCAGTTGGACAGTCAGTACTCTTAGTCATTCTTTATCTTGATTGGCATTCTTTATCTTGCTTGCTGAAACTGCCTTGTGAAACACGTTCTGAGTTACATTATCTGATTATACTGTGTTGTCAAATCATGAATCAGTAAATCATCAAGGGAAGGACAAAAGGCTACACAAATACCAAAGCAGGGCACAGCTAGGGGTTGACATGTAATTGGCAGCGTTCTCTTTATTCGCTTGAGTTCTGTTTTGAAAAACTTGTATAAATTGCAGCTATGATATGCTTTTGATGTATATAAGGCACAGGAGTAACATACAAGATCATTTTTAAGGTTAAATGATCTGCAACTTGCATTATTGCAATGCAGATGTTGAAATTTAGCACAATTACTCCATTAACTAACACCACACGTAACCGggtgttttaaaacattgctagCTTGGTGTTTTGGGGTCCTTCTGCTCTTAAAAATgatatgaatgtgtgtgagagagatactgcttattaaataacacattattataaCAGGAACTTTGTTGTTGCAGAAAATGTTCCTTATCCCCGGCTAGTTAACTAGCTCTGTTTTACTATTACACATAAGAATTTTATGTCCCCTGTTATGCTAACGTTAGCATTTTAGCTTGGGTCATTTTCTGTTGTGGATGTGgacaatattttcctgaaactGAGAGAGAATGTTTTAACATAAGTATCCGAATACATGTGGACAGAACCTAAATATAATGTATGACCCATAAGAGGAAGCAGTTTTTATGAATTATATTATGGTTGTGGTTTAGTCACAGGTGCTAGCCTATTTAAGATCATCTCGACCCCAATCACCTGTGAACACAAAGCTTTGAGCgtgcttttgcttttgtgtAACTTAACTGTGTTTTTGATATTGAAAATTTGAAAAGTAGTTCCAGCTGCTTACAGTAAAGGAACTGTTGTTGTGAATTATTAGCGGTTGATCTGTGTAATAATGCAAGAATGGTAACAAAAACTGCTCTTATCAGATATGAGATCATAGATAAAATGATTTACCACGAGTCAGATTGTGTGGTTGGAACTGATTGTtgcataaaataacaataatgctCTAAACCATAATAAGTTCTTGCTTTTTTAAAGGATATATACCAGTTGGCACACAAAACATAACAGGGAATTAATTACAAACTGTTCATTTTGAGAGATTCGTAACATTTAATCTTAAAACATGCAAGGAGAACTATACAGTTGAAGGTTGAGGAGTGTTTTCACAGATAAAGCGCCTTAAAACTCCCAGTCTGACTTTCTTTCGAcatggtgctgcagctgcaggctAATCAGATTCTTGCAGTTTTCATAAGCCTTTTTTCAGGCCAAACAATGGTAATGTACAGCTAAATGGGATTCATGGACCATTTTTGGCCAGTAGCACCTTTTCCTCAGCAGTTGATGGAAAATTGTGTTTGAGGCAGCTAATCAATGCAGTGTCGCGCTttattttcttccaaaaataatgcatttacatcTTTAACATGCACACAGACACTTAACAAATCTGCCTCTAGGTTCTTCATCTCTCCTTTGGCATGTTTGGCCAAATAAACCCTCTGTGACACTTGAGTGCTCTTTCTGGTtatcaaataaatttaatacattgtGCATGTGGAACAAAAAAGGATTTTCTGAGCTGCATGAACAAAATTTCACAAAACATGTACACATTTCCAATTGCTAATTGAATAAatgcttcttttgtttttaatacagaACTCTA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function
GO:0004686 elongation factor-2 kinase activity molecular_function

KEGG:

id description
K08292 EEF2K; elongation factor 2 kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49823 lncRNA upstream 39307 17057504 ~ 17058002 (+) True G36969
TU49804 lncRNA upstream 70378 17026187 ~ 17026931 (+) True G36956
TU49818 lncRNA upstream 72185 17024831 ~ 17025124 (+) True G36964
TU49816 lncRNA upstream 73894 17022768 ~ 17023415 (+) True G36962
TU49805 lncRNA upstream 76742 17020266 ~ 17020567 (+) True G36957
TU49833 lncRNA downstream 39938 17155946 ~ 17165403 (+) True G36977
TU49838 lncRNA downstream 50901 17166909 ~ 17167150 (+) True G36981
TU49839 lncRNA downstream 53343 17169351 ~ 17169856 (+) True G36982
TU49840 lncRNA downstream 56417 17172425 ~ 17172625 (+) True G36983
TU49865 lncRNA downstream 106392 17222400 ~ 17222875 (+) True G36998
XM_007251284.3 mRNA upstream 4699 17082313 ~ 17092610 (+) False LOC103032462
XM_015606339.2 mRNA upstream 4699 17082316 ~ 17092610 (+) True LOC103032462
XM_007251289.2 mRNA upstream 17530 17068936 ~ 17079779 (+) False LOC103033077
XM_007251287.3 mRNA upstream 17530 17068940 ~ 17079779 (+) True LOC103033077
XM_007251290.3 mRNA upstream 42891 17047584 ~ 17054418 (+) True LOC103034053
XM_007251283.3 mRNA downstream 7597 17123605 ~ 17131713 (+) True LOC103032149
XM_015606307.2 mRNA downstream 9312 17125320 ~ 17131713 (+) False LOC103032149
XM_007251278.3 mRNA downstream 16598 17132606 ~ 17149348 (+) False LOC103030465
XM_007251276.3 mRNA downstream 16599 17132607 ~ 17149348 (+) True LOC103030465
XM_007251277.3 mRNA downstream 16603 17132611 ~ 17149348 (+) False LOC103030465
TU49796 other upstream 78425 17000382 ~ 17018884 (+) False sun1
TU49797 other upstream 78425 17000382 ~ 17018884 (+) False sun1
TU49799 other upstream 78425 17002440 ~ 17018884 (+) False sun1
TU49230 other upstream 1657156 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 2306476 14789380 ~ 14790833 (+) True G36439
TU49795 other downstream 85489 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 116871 17232879 ~ 17234550 (+) False cby1
TU49885 other downstream 163653 17279661 ~ 17282231 (+) False LOC103027613
TU49999 other downstream 589698 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 599121 17715129 ~ 17715992 (+) True G37098