RNA id: XM_007251287.3


Basic Information

Item Value
RNA id XM_007251287.3
length 1661
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC103033077
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17068936 ~ 17079779 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGCGGTTGTGGGAAGGACGTCCAGGTCAGACATATTAGTTCTCGGTTGGagttgaaggagagagagagaacatgaaGGGGATTCGGGGGATAAGTCAAGTATCGagACGGGCCTTTGCGGCCACTTCAAGCCACCCACCCTTGAGTGAGCCTCTGTCGGGCCTTAAGGTGTCTGCGGGTGCCGTCCACATGTACCAGGATgtacatGTGACTAAACTGCCCAGTGGGTTGGTCATCGCTTCTCTGGAAAATTACTCCCCTGCGTCTCGCATTGGTGTGCTGGTGAGGGCTGGCAGTCGCTATGAAACCTTGGACAGCCTGGGTGTTACACACCTGCTTCGACTGgcgagtggtctgACTACCAAAGGAGCCTCTGCTTTTAGGATCTGCCGTGGGATTGAAGCTGTAGGAGGAAGTCTTGGtgtGAATACCACCAGAGAAACCATGCTGTACACCGTGGACTGTCTGAGAGATCAGATAGACACAGTCATGGAATATCTGATCAATGTGACCACTGCTCCAGAGTTTCGACCCTGGGAACTGGCTGAGCTCACACCCAGGGTGAAACTAGACAATGCCATTGCAAGCAAGAGCGTGCAGATTGGTGTCCTTGAGAATCTGCATGCTGCTGCTTACAAGAATGCGCTCTCCAACTCTCTGTACTGTCCAGATTACATGGTTGGCAAAATCTCCACAGACCAGATGCACACCTTTGTTCAGAACAATTTTACAAGTGGAAGAATGGCTCTTGTTGGACTGGGTGTGGACCATGCTGTTCTTAAGCAAGTAGGAGAGCAGTTCCTCAACATCCGTAGTGGAACAGGCACTGCTGGGTCAAATGCTGTGTATCATGGAGGTGAGCTGCGGCAACAGACAGGGGACAGCTTGGTACATGCAGCTCTGGTGGCTGAAGGAGCAGCAGTGAGCTCTGCTGAGGCCACAGCCTTCGGAGTGCTGCAGCATGTTCTGGGGGTGGGACCACGTGTCAAGAGAGGCTCCAACACCACCAGCCTGCTGGACCAGGCCATATCTAAGGTCTCAACTCAGCCTTTTGATGCCTCCGCATTTAATGCCAGCTACTCTGACTCTGGTCTGTTTGGAGTATACACCATCTCACAGGCCGCTACAACTAGAGATGTGATCAAGGCTGCCATTGGCCAGGTCAGTTCCATCGCACAGGGAAACCTTGCTGCATCAGACCTCAGCAGAGCCAaAGCCCAGCTGAAGGCTGAGTACCTTATGTCTATTGAAAGCTCAGAAAGCCTGTTGGAAACTATTGGGACACAAGCATTAACCGAGGGCACCTACCATTCCCCAGAGGCAATAACCCAAAAAGTTGATGCTGTGTCTTCTAGTGATGTTATTAATGCCGCAAAAAAGTTTGTGTCCGGCAAGAAGGCAATGGCTGCCAGTGGACATCTGGTGAACACCCCTTTCCTGGATGAAATCTAATTGACCTCCAGTGCTCCTCCGATTCAGAGAGGATGCAAGAAAACAATCTTGATACCAGTCCCAGCACTTGTCCAGAGTAATAATGTttgatgttaaaatattattttatgaagtggaaaaacattaaataagaggAAAGACTCTACCACTGTCCATCTGAACTGTATAgaacatgtaaactaataaaacatatttgttcggggaaaaa

Function

GO: NA

KEGG:

id description
K00415 QCR2, UQCRC2; ubiquinol-cytochrome c reductase core subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49823 lncRNA upstream 10938 17057504 ~ 17058002 (+) True G36969
TU49804 lncRNA upstream 42009 17026187 ~ 17026931 (+) True G36956
TU49818 lncRNA upstream 43816 17024831 ~ 17025124 (+) True G36964
TU49816 lncRNA upstream 45525 17022768 ~ 17023415 (+) True G36962
TU49805 lncRNA upstream 48373 17020266 ~ 17020567 (+) True G36957
TU49833 lncRNA downstream 76167 17155946 ~ 17165403 (+) True G36977
TU49838 lncRNA downstream 87130 17166909 ~ 17167150 (+) True G36981
TU49839 lncRNA downstream 89572 17169351 ~ 17169856 (+) True G36982
TU49840 lncRNA downstream 92646 17172425 ~ 17172625 (+) True G36983
TU49865 lncRNA downstream 142621 17222400 ~ 17222875 (+) True G36998
XM_007251290.3 mRNA upstream 14522 17047584 ~ 17054418 (+) True LOC103034053
XM_022669436.1 mRNA upstream 27983 17002663 ~ 17040957 (+) True sun1
XM_022669210.1 mRNA upstream 70825 16945064 ~ 16998115 (+) True LOC103036473
XM_007251304.3 mRNA upstream 125546 16929511 ~ 16943394 (+) True tubgcp2
XM_007255112.3 mRNA upstream 316737 16715892 ~ 16752203 (+) False LOC103044975
XM_007251284.3 mRNA downstream 2534 17082313 ~ 17092610 (+) False LOC103032462
XM_015606339.2 mRNA downstream 2537 17082316 ~ 17092610 (+) True LOC103032462
XM_022669212.1 mRNA downstream 17530 17097309 ~ 17116008 (+) True eef2k
XM_015606327.2 mRNA downstream 17530 17097309 ~ 17116008 (+) False eef2k
XM_022669213.1 mRNA downstream 17530 17097309 ~ 17116008 (+) False eef2k
TU49796 other upstream 50056 17000382 ~ 17018884 (+) False sun1
TU49797 other upstream 50056 17000382 ~ 17018884 (+) False sun1
TU49799 other upstream 50056 17002440 ~ 17018884 (+) False sun1
TU49230 other upstream 1628787 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 2278107 14789380 ~ 14790833 (+) True G36439
TU49795 other downstream 121718 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 153100 17232879 ~ 17234550 (+) False cby1
TU49885 other downstream 199882 17279661 ~ 17282231 (+) False LOC103027613
TU49999 other downstream 625927 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 635350 17715129 ~ 17715992 (+) True G37098

Expression Profile