RNA id: XM_007251304.3


Basic Information

Item Value
RNA id XM_007251304.3
length 3149
RNA type mRNA
GC content 0.45
exon number 18
gene id tubgcp2
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16929511 ~ 16943394 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGTTTTGGCGGTTCTtcgaaaaaataataagagtcTCTGATATCTTGTTAGTTAGCAATGTCAGTGTTATTTACACGATAGCTGCGCGCTTCTGCAACTGAGGCTATTGCAGGTGGTCGATGTGACACCATGAGTGAATTCAGGATACATCATGATGTCAACGAACTGCTCAGCCTCCTTCATGTTCGAGGAGGAGATGGGGCTGAGGTCTATATTGATTTACTGCAGAAGAACAGGACTCCATATGTCACCACTACAGTGTCTGCACACAGTGCTAAGGTTAAGATTGCAGAGCACTCTAAAACACCTGAGGACTTTTTGAGGAAATATGAAGAACTGAAGTCAAAAAATGCACGCAACTTGGATCCACTTGTTTACCTTCTTTCAAAACTCACAGAAGATAAAGAGACCCTGAAATGTCTGCAACAAAATGCCAAGGAGAGATCAGAGATGTCTGCAAATGCAACATCAAGCAGCACAACATCCTTCAGTATTCCCACCACCAGCACCAAGATGTCAATGCAGGAGTTGGAGGAACTGCGCAAAAAGCTTGGGAATGTAACAGCCAGCACCAATGTTCCCCAGtctGCTGAAGTTATTCGTAAGATGCTAAGAGACAGACACAACAAGAAGAATCCCACACAGCCTATTCCTGTGTTTCCAAACTGGGTGTATGACAGACCTGCACTTATTGGAGATTTTATGACCAGTCCTACACCAATGGGGGATCCAGTTGTGGCGATTGGGACAATGCCACTGCCTGTCCAGGAGCAGGCTCTGGTTGAAGACTTGCTGTACGTACTTATTGGTGTGGATGGAAGAGACGTCACAGCCCAGCCTGTGCTTGGCCGACAGAGTCGCTCCTTCATAGTAGACCCTTCTCTGGACATGTCTATTAAGGAGCTGGTAAACCGGGTCTTACCAGTGGCATCCTGTTACTCCACAATTACTCGCTTCACAGAGGAGAAGTCGTCCTTTGAGTATGGCCAGGTCAACCATGCTCTCACTGCTGCAATGAGGACTTTGATGAAGGAGTATCTAATTCTGGTGACCCAGCTCGAACACCTACACAGGCAGGGCATGCTCTCCCTGCAGAAGCTCTGGTTCTACATTCAGCCTACAATGCGCACCATTGAGGTCTTGGCCTCCATTGCTACATCAGTGGAGAAAGGAGAATGTATGGGTGGTTCAACATTAAGTCTGCTCCATGACCGCACTTTTAATTACACTGGGGACAGCCAGGCCCAAGAGCTGTGTCTCTATCTCACCAAAGCAGCCAGCGTTCCATACTTTGAAATACTAGAGAAGTGGATCTACCGTGGAATCATCAAAGACCCTTATGGAGAATTCATGGTTGAAGAACATGAGCTTCAAAAGGAGAAGATTCAGGAGGACTATAACGATAAATACTGGGATCAAAGATACACCATTGTGCAGCACAAAATCCCATCTTTCCTCCAAAAAATGGCAGATAAAATACTCAGCACAGGGAAGTACTTGAATGTTGTAAGGGAATGTGGGCGTGATGTGACCTGTCCAGATGCTAAGGAAGTACTATACACCTTAAAAGAGAGAGCATATGTGGAACAAATTGAAAAAGCCTACAACTACGCCAGTAAGGTCCTTCTGGACTTTCTTATGGAGGAGAAGGAGCTGGTGTCACGACTGAGGTCCATTAAGCACTATTTTTTAATGGACAAGGGAGACTTCTTTGTGCACTTCATGGACCTCACTGAGGAGGAGCTGAAGAAACCCGTTGATGACATCATCCCTCCTCGGCTGGAGGCTCTGCTGGAGCTGGCTCTTAGAATGAGCACGGCCAACACAGACCCCTTTAAAGATGATCTAAAGATTGACCTGATGCCCCATGATGTCATTACTCAGCTGTTGCGGGTGCTGGCCATTGAGACTAAGCAGGAAAAGGCTATCATCAATGCTGACCCTACTGATGTGGCCCTAAGTGGCCTGGAGGCTTTCTCTTTTGATTACATTGTAAAATGGCCACTATCACTTATAATCAACAGGAAAGCACTGACAAGATACCAGATGCTGTTCAGACACTTGTTCTACTGCAAACATGTTGAGAGACTGCTGTGCAATTTTTGGATCAGCAACAAGTCAGTCAAGCAGTACTCCTTGCACTCTGCTAAGTGGTTTGCTGGTGCGTTCGCTCTCAGGCAGCGCATGCTGAACTTTGTGCAGAACATCCAGTACTACATGATGTTTGAAGTCATGGAACCCACATGGCACGTCATGGAGAACAACCTGAAATCGGCGTCAAATATTGATGATGTGCTTTGCCATCACACCAGTTTCCTGGATAACTGTCTGAAGGACTGCATGCTGACCAACCCTGAACTTCTAAAGATCTTCTCTAAGCTCATGTCTGTCTGCGTCATGTTCACCAACTGTATGCAGCGATTCACCCAGAGCATGAGGATGGACAGTGAGATGAACCGTCTGGAACATGGAACCATGGAGGGCCCTCCAACTCGGAATGAACGCACTGAGgaagctgaaaaaaagaaacttgCCTCCAAATTTTTAGCTGAGCATGTGGAATCCCTGCAGTCTGATTCGAACTTTGAAGGCACGATCAGTAAGTTTGACAGTAATTTCAGCACACTGTTGTTGGATCTGCTGGACAAGCTGAGTATCTACAGCACTAACGACTGCGAGCACAGCATGATCAACATCATTTACAGGTTAGACTTCAATGGATTCTACACTGAGCGTCTGGAGCGGATGGCTATTGAGAGGAGCCAAAAAGCTGCTGCGTAATAATGCTAAGGACTTTTATAAAGTGTGCAACATGTTATTCTTATGgtatgttaaaaatgaaaactgtgtacctaataataaactaatattaatgtgtgtaacattacaaaactttttttttactgtacagtTAAAGTATTTGCTTGGCTGCGTGGTCATTGTGTGCCTCTTTTGTGTTGCTGTTAAATGCGTAGCCGTAATGAGCGAGCAGTTCTCTCCTAAAACATTGGATCAATGACTTCAGCCCTGGTTATATCATGTgcgtttttctttattcttcatTTCATGAAGTCATTATTTAAGGGGTATGTACAAAGTCTTGTTGCTATTACAATGTGAAGGCAATAAACCTCAGTGACAAATCTGA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16569 TUBGCP2, GCP2; gamma-tubulin complex component 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649885.1 lncRNA upstream 62557 16863070 ~ 16866954 (+) True LOC103038048
TU49734 lncRNA upstream 91547 16836526 ~ 16837964 (+) True G36915
TU49715 lncRNA upstream 136911 16790670 ~ 16792600 (+) True G36899
TU49716 lncRNA upstream 138255 16733612 ~ 16791256 (+) False G36899
TU49658 lncRNA upstream 360119 16540984 ~ 16569392 (+) True G36852
TU49805 lncRNA downstream 76872 17020266 ~ 17020567 (+) True G36957
TU49816 lncRNA downstream 79374 17022768 ~ 17023415 (+) True G36962
TU49818 lncRNA downstream 81437 17024831 ~ 17025124 (+) True G36964
TU49804 lncRNA downstream 82793 17026187 ~ 17026931 (+) True G36956
TU49823 lncRNA downstream 114110 17057504 ~ 17058002 (+) True G36969
XM_022669202.1 mRNA upstream 177308 16715891 ~ 16752203 (+) True LOC103044975
XM_007255112.3 mRNA upstream 177308 16715892 ~ 16752203 (+) False LOC103044975
XM_007255119.3 mRNA upstream 402264 16407964 ~ 16527247 (+) True nrbf2
XM_007255120.3 mRNA upstream 402264 16519960 ~ 16527247 (+) False nrbf2
XM_007255116.3 mRNA upstream 469598 16457415 ~ 16459913 (+) True LOC103046195
XM_022669210.1 mRNA downstream 1670 16945064 ~ 16998115 (+) True LOC103036473
XM_022669436.1 mRNA downstream 59269 17002663 ~ 17040957 (+) True sun1
XM_007251290.3 mRNA downstream 104190 17047584 ~ 17054418 (+) True LOC103034053
XM_007251289.2 mRNA downstream 125542 17068936 ~ 17079779 (+) False LOC103033077
XM_007251287.3 mRNA downstream 125546 17068940 ~ 17079779 (+) True LOC103033077
TU49230 other upstream 1489358 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 2138678 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 2465872 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 4226455 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 4363540 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 56988 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 56988 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 59046 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 258103 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 289485 17232879 ~ 17234550 (+) False cby1

Expression Profile