RNA id: XM_022668851.1


Basic Information

Item Value
RNA id XM_022668851.1
length 2968
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC103038367
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 355650 ~ 365154 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTACAGAGAAAAAGCTCATGCTGGTGTTCTTCCTCCCATCATTTCTTTGTcaacttttaaaaacaaaggACTACCATAATGGCACTGATGAAGCAGCTCTTTATCCTCTGGTTCttagcagtagcagcagtggCACAGAATTCTACAGCCCCACCGACCACAACTACCCCTACTACTACTGCAACCACTGCAACCCCTGCAACCACTGAAACCCCTGCAACCACTGAAACCCCTGCAACCACTGCAACCACTGAAACCCCTGCAACCACTGAAACCCCTGCAACCTCTGCAACCACTGAAACCCCTGCAACCACTGAAACCCCTGCAACCACGGAAACCACTGAAACCCCTGCAACCACTGAAACCCCTGCAACCACTGAAACCCCTGCAACCACTGCAACCACTGAAACCCCTGCAACCACTGCAACCACTGAAACCCCTGCAACCACTGCAACCACTGCAACAACTGCAACCACGGAAACCACTGAAACCCCTGCAACCACTGCAACCACGGAAACCCCTGCAACCACGGAAACCACTGAAACCCCTGCAACCACTGAAACCCCTGCAACCACTGCAACCACTGAAACCCCTGCAACCACTGCAACCACTGAAACCCCTGCAACCACTGCAACCCCTGCAACCACTGCAACCACTGAAACCCCTGCAACCACTGAAACCCCGGCAACCACTGCAACCACGGAAACCACTGAAACCCCTGCAACCACTGCAACCACTGAAACCCCTGCAACCACGGAAACCACTGTAACCACTGCAACCACTGCAACCCCTACTACCACTGCAAATACTCCTACAACAGCCACAACTATGACTACAACCACTGCAGAACCAGGTCCCTGTGTACTGCACCCCTGTCCTCTAGAAAGCACCTGTCAGGAGCGCTTAAACACTCGCATCTGTCTTTGTAGACCAGGACTGTTCTACAGTGAAGATCTGAATACCTGTTCTCATGCAAGAACTTTCCCCAGCGATTTAAGAATTGACGAAGAATTTACAGAAGATATGAAGGACCCTACTTcagaagcatttaaaaaaacagctgatgAAATCATTAAAGGGATTAGTGAATCCTTTAAGAAACCAGAATTCGAGTCATTGGGGTATATTGGATCAATAGTTCTAAGTCTTAGACAAGGCAGCGTGATCGCAGATGTGCAGAACTTCTTTGATGTTGCATCAGATGTCTCCACTGAGAATGTAACGGAGGCATTAAACACCGTAACTATTAACAACAAAGAGGTCACTGTTGATTTGAAGGACCTATGCTCTAAGGGATACTGCGGGGTGGATTCCACAGAGTGTTCCTTTAAAAATGGGCTTTCCACATGCACTTGCAAGCCTGGATTTATAAAGTCGGCGGTAACGGACCAGGAGTGCATCGCCTGTCGCAGTGGTGAGAAAGCAGTAAACTCAGATACCTGTGAAGCttgtCCTTTTGGTTACTCTGGTTTCAACTGTGATGAGAACTATCTCTTGATTGTGGTCATTGTTGCCACTGTCCTGGGCGTACTGTTAGTTGCCAGTTTTGTGGCTGTTATAGTTTTGAGTAGCAGaaacacacagaaagacagCACCTCTTCAGATGACGGTATTGACTTTACCGATATGGAGTTTCGCAAACCTGCAGGAGTTCCCAGAGTGCCACGGGCAAACGCAGGTTCTGGCTGGCAACCAGCCAATCTGGAACCAGCAGACAGTGGAGACACTTATGCTCTGGTGACCAAAGGCCAACCAGAGAAAATACCGatggaaaaatacaattattcCAACAGTGAAGATACTGGAAGATATAGGAGCCACCATTCATCCAGGAATGAAAAAGAATTTGGAAATGTCAATAGGAGTGTGTATGGGAATGGAAATGGGAATGAGAGTGCTTATGGGTACGGGTCCAAGGCAGCGAGTAGTGGCCCTGGAAATGGGAATGGGAGTGGTTATGGGTACGGGTCCAGGGCAGCGAGTAGTGGCCCTGGAAATGGGAATGGGAATGCTTATGGGTACGGGTCCAGGGCAGCGAGTAGTAGCACTACAGGCTCAAAGAATCCCTACTATGAGCCATATGAAGATATGCCCCGCAGATATTAGTTTCAGAAGATGAAAAGTTTTACAAGTATATTGATGCTCATACTTCTCATATTACCATGCtcttcatgcacacacacacaaacacacactttaaaaactCTTTAGGTAAAGCAGTAACGTTTGTCCAGGGTGGCATCGAACTCTAGAGACTGCAGAACGTAATGTTGTTAGCATCTCACTATGACATGCACTGCTGCCCATTATGACATTTGTTTTCTTGACAGTGCAACTGTAAATCTATAAACATGTAGAACCTGGCTTGTACCCAGTTTCTACTATGACAACAGAAAAGAGTAGTTGCTGTCCAGTAATTAGTTTCAATAAATTTATCAGTCACTTCCCTTGGTAGCAGGTCAGCACACTTAGCTGCAGCTGACAAGTAATACATATATTTCTCAGAACGAGGCTCATCTCATGCTTTACTTTTCTACTAATTACAAAACAGCTGTCTCTCAAACAGTTCAGTGAATTAAGCTGTTATGTTTGCATACCTGCAACATAACTAATTCTGTGCTAACTTCATCCCTTTTGCAAGTAAAATTTCACTCCATTTTGGAAAAGCACTTTCAATGTGAATATTGGTTTTACCACCTTTATTGTTGCagagatttttggcagtgtagcatgttttttttgccCAAAGAAATACAGTGCCTCCTTCTTGTTTTAGCCAAACGGACAGCAACAGGATGTTGAGAAGATGGGTGGAGTAATAGGTATCGCAGTCAAGGAGCTAATTCAGGGAGTTGTTTTTCAAAGATGTGCTGATGCCATTTCTAAAGAATATTGttttacatattacattacCTATACGTATAAACAATGGctggtcatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44761 lncRNA downstream 809 354200 ~ 354841 (-) True G33286
TU44749 lncRNA downstream 78970 275050 ~ 276680 (-) False G33277
TU44750 lncRNA downstream 78970 275050 ~ 276680 (-) True G33277
TU44747 lncRNA downstream 80240 275050 ~ 275410 (-) False G33277
TU44742 lncRNA downstream 85259 240157 ~ 270391 (-) True G33272
TU44772 lncRNA upstream 4573 369727 ~ 372765 (-) False G33289
TU44774 lncRNA upstream 4573 369727 ~ 372765 (-) True G33289
TU44776 lncRNA upstream 5219 370373 ~ 373316 (-) False G33290
TU44777 lncRNA upstream 5219 370373 ~ 374146 (-) True G33290
TU44783 lncRNA upstream 30953 396107 ~ 401312 (-) False LOC111192416
XM_022668849.1 mRNA downstream 18497 306356 ~ 337153 (-) False LOC103038678
XM_022668848.1 mRNA downstream 18497 306356 ~ 337153 (-) False LOC103038678
XM_022668846.1 mRNA downstream 18497 306356 ~ 337153 (-) True LOC103038678
XM_022668847.1 mRNA downstream 18497 307345 ~ 337153 (-) False LOC103038678
XM_022668845.1 mRNA downstream 56650 287990 ~ 299000 (-) False ppp1r3c
XM_022669426.1 mRNA upstream 24280 389434 ~ 400990 (-) False LOC111192416
XM_022668853.1 mRNA upstream 44260 409414 ~ 418452 (-) True LOC111192339
XM_007234065.2 mRNA upstream 75400 440554 ~ 448541 (-) False znf281
XM_022668850.1 mRNA upstream 75400 440554 ~ 448317 (-) True znf281
XM_022668856.1 mRNA upstream 201732 566886 ~ 667790 (-) False LOC103046197
TU44781 other upstream 24315 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 24315 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 24315 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 760311 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 761241 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile