RNA id: XM_007251310.3


Basic Information

Item Value
RNA id XM_007251310.3
length 1523
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC103039609
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 101240 ~ 109740 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAGGGAACGAGAATGGCTTTGGCCCCGAGTCAGCTGATGATCTGATGTCTCTAAGCGTGAGCTGAAAGATGGTGGTCATTGCTAGTCAGCCCCACTTGTGTTTCCCCTGCATTCCTGCCACTGAGTGGTGATGGCAGCTTGAGGCACCTTCTTTTACCCTTCCAAACATGACTGGCATCTTATTGTGCATCCTCGTCAGATGACAGCATGCTGTGctggagaagaagaggaagggCAGGCTGGATCTGGTGTCATCCCAAAGTGTATATAAGAGACGCTGGGATCGGATGCAGTAGAGTTTGGGACAGAGAAGCACTCATCAGGCAGCAAATCCTGCATTCATTAGACTTTCATTTACTCTACACTGCACACATGGGAGTTCTACGGGTTCAAGAGCTGGTAACTGACAAGAAAGGTGGAGTTAATGAAGAAAcagaaactttaaaatataattcgTCCATCAGCCAAGAGACAAAGGACGAGCTAAAAAGTTTTAGCGAACTTGACAGTGATGATGACATCAGTCGGGTTGACAAAGATGTCCAGTTAAACCAAGACACTATTGGCGATTTACAGAAGATACTAGAACTTCAACAGCagagaaaaaacaggagaacacCTGAGAGCAAAGCACATCCAGCATCTCAAACTGTGTGTGATTTTGTTGATGAAGATGATTTTCTGAAGGCAGCTGTCGAGAACAAATTGCCTATGATTGAGAGCTATCTCACCAGGGGTGCAGACCCGAATGCGTGTGATAATTTCAATCGTACAGCTCTACACAGAGCTTGTTCACACGGCAATGTGGAGATTGTGAAGCGGTTGCTTGAAGCTGGAGCTCTAATTGAAAACAGGGACAAGCTTAATGCAACGGCTGTTCACTGCGCGTGCCGTGGGGGAAGTCTGCCTGTGCTTAAGCTGCTCCTGAACCACAACGGCAACCTCAGTGCCAGAGACAAGCTCCAGAGCACTCCTCTGCATGTGGCGGTGAGGACAGGCAGCTATGAATGTGCTGAACTCCTCATACACTGTGGAGCAGATGTCAACGCAAAGGACAGAgAGGGCGACACACCAATGCACGATGCCGTCCGACTAAACCGATTCAAATTGATCCAGCTGATGCTGATGCACGGAGCCAACCTGAAGCTGAAGAACTggGAGGGGAAATCACCCATGGACAGTGTTCTGGAATGGCAGAGTGGGGCTAAAACCATCCTGGACAACTTTAAGGACAATACTGCCTAGCATCTCCTATCTAACCACAACTGTGTTTGATTTTAATAAGTGAGATTTTAGACGGAACattattatatgtatgtattgcGATGCCGAACaaactttatttattgaatttattgAGTGAATTGTTTTTGAAATACAAGTATGTAGATGAAGATGAAGTCATTCTGGAGTTTCTGAAAGGCCAGGAAAAGTGATGTGACTCATTAAGTGACTCACGGTAAGTGGCAGATTGAGAAGGTTATGAAGGAATAAAGCTTAAAGCTGAAATGTAGGAACTTC

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44739 lncRNA upstream 117257 226997 ~ 231863 (-) True G33270
TU44742 lncRNA upstream 130417 240157 ~ 270391 (-) True G33272
TU44747 lncRNA upstream 165310 275050 ~ 275410 (-) False G33277
TU44749 lncRNA upstream 165310 275050 ~ 276680 (-) False G33277
TU44750 lncRNA upstream 165310 275050 ~ 276680 (-) True G33277
XM_022668843.1 mRNA downstream 5070 72134 ~ 96170 (-) False LOC103039921
XM_022668842.1 mRNA downstream 5070 72134 ~ 96170 (-) True LOC103039921
XM_007251147.3 mRNA downstream 63762 21446 ~ 37478 (-) True pank1
XM_022668840.1 mRNA downstream 81420 918 ~ 19820 (-) True slc16a12
XM_022668845.1 mRNA upstream 178250 287990 ~ 299000 (-) False ppp1r3c
XM_007251142.3 mRNA upstream 178250 287990 ~ 292577 (-) True ppp1r3c
XM_022668849.1 mRNA upstream 196616 306356 ~ 337153 (-) False LOC103038678
XM_022668848.1 mRNA upstream 196616 306356 ~ 337153 (-) False LOC103038678
XM_022668846.1 mRNA upstream 196616 306356 ~ 337153 (-) True LOC103038678
TU44781 other upstream 279729 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 279729 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 279729 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 1015725 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 1016655 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile