RNA id: XM_007251319.2


Basic Information

Item Value
RNA id XM_007251319.2
length 4974
RNA type mRNA
GC content 0.42
exon number 27
gene id LOC103043322
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17148541 ~ 17169878 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGTAGAACAGATGAGCAGATAGACAGTGTACAGTTCACCTCAGCTTTAGGCACACTAGTGCTTCCGTCCTTAATGTTGTTCCATGGCTGTGGTGTTTAAAATCTGTATTCTCAGCTACAGGATCTTCAACTTTATTAGTCTGTAACTGTCTTACATTTCacctttaacttttttatttgccCTGTTTTTGTCAAACAACGCTCAATGGAGGACGCTGTAATACCCTAACATGAGAGGACGTTGGGGGCCTAGCTAGCTTCTAGTGTGAAGTTGGTCATCTGGGTCAGCAGTGCTTGTCCACTGACTAGGAACAGCTGATAATTGAAAATGCGGTACTGGCTGATAGTTTTTGCACTGTGGACCTTTCCAGCTGGATCTCTCCTTATGACTTCATCCTGCCTCAATGGAGAGTACATGATGAACGTGGTGTTACTGCAGGACGGCGTCTCACCCTGGAGTATGGAGTTTGTGCAGCCATATGTGGTAGATGCTATTGAAGAAGACGcccaaatcaacttaaattataGTGTGAATCGCAATCTCACTGCCAGCTACAATGGCTTTCAGACCATGTATTACCTGCAGAAAGGCTGCACCAGTAGCACCTGTGAGGCTGTAGAGACCCTGAAAATTCTAAAGGATTCAAAAATGGTGGGCTGTGCTCTGCTGGGGCCAACCTGTACTTATGCAACCTTCCAGCTGGTGGAtCTTGACGTTGGTCTGGAGCTCAATATGCCCATCATCTCAGCGGGAAGCTTTGGTCTGTCATGTGACTACAAGACTAACCTGACACGCTTATTGCCTCCTGCTCGCAAAGTTGCCAGCTTCTTTATCAACTTCTGGAACTTTACAGACCATCTGAAGCCAGTTTGGAAAAATACATACATCTACAAGAAAACCGAGAATACAGAGGATTGCTTCTGGTACATGAATGCACTTGAGTCTGATTCAGGACCCTTTGCTCACTACGCTGAGAAGCGAGATATTCTAAGAACGGAAGATAAGCTCAGTGCTGCTATGACAGACAGTCGAAGGACAAGTAACTtgttcattttatgtGGCACTCCTGATGACATAATTGATTTGAAGAATGGATCCATGGACTCTGACCCACGCACTGCTTTTCTTCTGATCGATCTGTACAGTGACAGATACTACACTGAAGCGTCCAATTCTGCTATGAGGAATGTCCTGGTGTTGACCATGCCCAATACAAGGAACTACACCGTCAGCACAAACAACACGATGAACGATTATATTGCAGCATATCATGACGGGGTGCTGCTGTTTGGTCAGATTATGAGGGCAATCTGGAGCATTCCCGCATTAGAACTTCAAGACGTAGAATCCGTCAACATAAACTACTTTAGAAACGTGTCGTTTAAAGGGATGGCAGGAGTTTATGAGTTAGATGAGCATGGTGATAGAGATGTGGTGTTTTCACTGATTTACACCAATGCCAACAATGAGTACAAAGTTCTTTATGAGTTCAACACCACGGTTAATCAAACAGAGCTGGTCGAGAACAACCCCTCCTTTATCTGGCTCTCCGGGCTCCTTCCTGACGATCGGCCCAATAGTGATCGCAAAGGTCTGTGGATGCAGGAGATCATTGTTATAGTACTGGGATCCATAATTGTAGCAGTAATAGCTTCAGTTGCATTCGGCTTCTACTGGCAGAACAGGTCATACCGCCAAAAGCAGAGGCAATGGTCCCACATCCCTACAGAGCTCATCACACCTATAGAGTTTAGTGAGAGGAGCATGGTGTCTTTAAAGATTGATGAAGATTCACGGAAGGATAAACGCTACAAAATCCGCTGTGCACGATACGATAAAAAGATTGTGTTCCTTAAGAAGGTGAAGCACTCGGACGGCTCCTTCAGCGAAAGTCAGAGAATAGAGCTTAATGCACTGTTGCAAATAGATTATTACAACCTGATAAAATTCTATGGCACCATCAAGCTGGAGCAAGAAGTTCTTGGAGTGTTTGAGTATGGTGAGCGAGGATCTCTGAGGtacctACTTGATGACAGGATTTCATACCCAGAGGAAACCTTCATGGACTGGGAGTACAAAATCTCTGTCATGTATGACATTGCAAAGGGCATGTCCTACCTTCACTCGAGCAAAATTGAAGTCCATGGTCACCTGAAATCCACCAACTGTGTGATTGACAATCGTATGGTGGTGAAAATCACTGGTTTTGGCTTTAATACCATTTTCAGCCCAGACAGAGATCTTTGGACTGCCCCAGAACACCTACGGAAAGAGGGGATCTCTCAGAAAGGGGATGTCTATAGTTTTGCCATAATTGCGCAGGAAATCATGCTGAGACAGTGCACATTCTACACCAGAGACTGTTCAGACCAAGCTGAAAAGCTGGGTCATGTTCAGTATCCCAGAATGATGTCTTATTTTAGACCTGATCTGAACTTTGAAACTGCGAGTGAGAAAGAATTGGAGGTCTTCATGCTAATCAGAAACTGTTGGGATGAGGATCCTGAGAGAAGACCAGATTTCAAAAAGATTGAAAGCACTTTGGGAAAGATTGTCAGTCTGCATAACCAGGCCAATGAGAGCTACATGGGTAATCTGATCCGGCGGCTGCAGATGTACTCCCGTAACCTGGAGCACCTGGTGGAAGAGCGCACCGCCCTCTAcaaggcagagagagacagagcggaTAATCTTAACTTCATGCTGCTTCCAGGgCCTGTGGTGCGCTCTCTGAAGGAGACGGGCAGGGTTCAGCCTGAGCTGTTTGAAGAGGTCACGATCTACTTCAGTGACATTGTGGGCTTCACCACTCTTTGCCACTACAGCACACCTATGGAGGTGGTGGACATGCTTAACGACATTTACAAACACTTCGACAGCATCCTTGACCATCATGATGTTTACAAGGTCGAGACCATAGGTGACGCGTACATGGTGGCCTCTGGTCTCCCGAGGAGAAATGGGAATAGACACGCTATGGACATTTCCCACATGGCGCTGGACATCCTGTCATTTGTGGGCACGTTTGAGCTACGCCACCTGCCTGGCCTGCCCCTATGGATTCGTATAGGGGTGCACTCAGGCCCGTGTGCTGCAGGTGTGGTGGGGCTTAAGATGCCCAGGTACTGCCTGTTTGGAGACACAGTGAACACGGCCTCTCGAATGGAGTCGACAGGATTACCCCTGCGAATCCATGTGAGTCAGTCAACCATCAACATTCTCAAGCGTGCCAACTGCAAGTTTGAGTGTGAGATGCGGGGAGAGACATATTTAAAGgGTAAAGGCAAGGAGATGACATACTGGTTAACAGGAGTCACAGGGAAAAACTACAACCTGCCAGTACCCCCAACCGCAGAAAACTTTCAGCGACTGCAGCAGGACCTGGCCCAGATGATAAAGATGAGTCTAGAAAAGCGATTTCCGAGGCTGGAGAGGAGGAAAACTCTTTCAGCACGGCAGAGGAGACTCAGAGGAAACTCCATGTTGGGTGATTCAGAGCAGCCAGAGTACCTGCAGCTGGTTACTGTAGATAATGTGAGCACTTACCTGTAGCACCTCAGTACACTCTCAGTAACAACCACACCACAGTAAAACACTGCTGCCCACCGTCCAATTCTGTACGTACTTTATACCTCCTATTCCCTAGTTCTATTCTATTGATATGCTAGTTTTAACTTTGCCTGAGTActttgtttctgtttgtttctttgtgctCTGTTTGAAGTTGGCTGTAACATTTACTGACAAAATGAATGTGCGTTTTAAGATACAGTTTTCAGTCATATAATGAATAGGTGTAATATAACccatattttattgttatgaTACATCTCTATTAATGCATGCAATAATCTCAGGATCAGCACTTAGACAATTGCACTTACAgacatatttagatatttactgatatttcatttttatttattgtactcTAGACTTTTAGTCCCAAATTCAACATTTTATATACGTCAATTTACAATCACTATCTTAAtgcaattttttaaattgtgtggttaggtgtcagtttttatttatttactaaatttaatgttatgttttatatatttctcaATTTTGTACTTAACTACTGTATATTTTGCCATATTGCTCACCCGTACTATCACAATTTCtttcaacaacaaaaacacttcattaaaacttttcttttatttgaaaaaagaatTTATTTGAATGCTGCGTTTATCCGCTAGTCACACAACGATGCATGGATTTTCTAGTGTAAATGTGATTGTTTTGTATGCTTAACAAAATAGTCTTGGAAAATGCACTGATCCAAATTTCTTTGGTCTATGTACAATATTTATGAACAATAAATGTTAAGACTACAAACTTGATTGTTTATCACACAAGGAAATTTCTAATCTGTTTTTCATAAAATCTTTGTAATGTTAAACTGATAAGCACACTGCAAATCTATGATTTATACACATGGAACAGCTAGTTCAGATTTACCAAATcaactacaaaaataataaaaaaaggcaaaaaaagaaattaaagtaaacaagtaaacagTATGTTCTGTAcaaacaatgaataaataaatccaaaaataaggcaagaaaatacagaaagaaatcTTAGTTACTGTACAGAGGGCAAACTTTACCAGAGTATCATCTCCAAACATCCATTAGTATAAACTTAACGGTTTAGGAGTGACTCAGTGACCttataaaacacattcacaacttttttccacaaaaaaggcatttaaaaaacaaaacaaaaatacagttgAGGTCATTTACCGGTAATCCATTACTCTGACCCGGAACCCGATGTGCAAAACCAAATGCAACGGATTTCAACACAAAGAAGTATTTCATAACAGAATAATTCATCATAaggcttaaaataataaaaaacaaaccaattGTTCTATTGAAGTTAAATTAAATCTACTGTATAGGGTCATGGCTTTTTGTGTTCATAAATAAGAGGcgcttct

Function

GO: NA

KEGG:

id description
K12320 GUCY2C; heat-stable enterotoxin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50160 lncRNA downstream 26340 17121775 ~ 17122201 (-) True G37217
TU50158 lncRNA downstream 32533 17112502 ~ 17116008 (-) True G37215
TU50155 lncRNA downstream 37832 17108712 ~ 17110709 (-) True G37213
TU50140 lncRNA downstream 56490 17091742 ~ 17092051 (-) True G37206
TU50126 lncRNA downstream 94123 17047607 ~ 17054418 (-) False crym
TU50195 lncRNA upstream 71298 17241176 ~ 17327596 (-) True G37237
TU50196 lncRNA upstream 71842 17241720 ~ 17247453 (-) True G37238
TU50220 lncRNA upstream 165713 17335591 ~ 17337322 (-) True G37254
TU50244 lncRNA upstream 215963 17385841 ~ 17390421 (-) True G37274
TU50286 lncRNA upstream 304032 17473910 ~ 17476836 (-) True LOC103025140
XM_007251285.3 mRNA downstream 80559 17065403 ~ 17067982 (-) True LOC103032763
XM_015606335.2 mRNA downstream 85594 17053529 ~ 17062947 (-) False crym
XM_007251291.3 mRNA downstream 85596 17053529 ~ 17062945 (-) True crym
XM_022669417.1 mRNA downstream 233256 16913576 ~ 16915285 (-) True LOC103043629
XM_007251305.3 mRNA downstream 255024 16875022 ~ 16893517 (-) True LOC103037732
XM_007251275.3 mRNA upstream 9469 17179347 ~ 17184427 (-) True LOC103030148
XM_007251274.3 mRNA upstream 17789 17187667 ~ 17198837 (-) True LOC103029821
XM_007251272.3 mRNA upstream 34454 17204332 ~ 17212783 (-) False LOC103028774
XM_007251270.3 mRNA upstream 34454 17204332 ~ 17210607 (-) True LOC103028774
XM_022669437.1 mRNA upstream 43718 17213596 ~ 17232139 (-) True LOC103028243
trnal-uag_1 other downstream 53215 17095245 ~ 17095326 (-) True trnal-uag_1
TU50113 other downstream 129623 17016128 ~ 17018918 (-) True G37183
TU49443 other downstream 1308056 15837105 ~ 15840485 (-) False LOC103023526
TU49415 other downstream 1379012 15755613 ~ 15769529 (-) False G36677
TU49409 other downstream 1379050 15755613 ~ 15769491 (-) False G36677
TU50180 other upstream 9500 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 204306 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 263094 17432972 ~ 17466024 (-) True G37290
TU50267 other upstream 263094 17432972 ~ 17463317 (-) False G37290
TU50318 other upstream 414172 17584050 ~ 17653785 (-) False LOC103025753

Expression Profile