RNA id: XM_015607335.2


Basic Information

Item Value
RNA id XM_015607335.2
length 2163
RNA type mRNA
GC content 0.50
exon number 2
gene id egr2
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16463328 ~ 16484145 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgcgagagtgtgttGTTATTGGAGCAATGTAATGCTCTTGGAGGAGCCCACTCATGTGATGGAGATTCACAAAGAGCCACTTCTCTCCAAGCCCTCATAATATGGCTTGATCAACGGTGATATGAGTGCAGAGAAGCGGTCCCTAGACTTGTCCTACGCCAGCAGCTTCGCTCAGCCGGCAGCTCCCCGTAACCAGACCCTTACCTACATGGGCAAGTTCTCCATCGAACCGCAGTACCCGGCCAACTGGAACCCAGAAGGGGTGATCAACATTGTCAGCGCGGGTTTCCTGGGCATGACCCAGCCTTCCTCTGCCTCCTCCTCTCCATCCTCCTCTGTGTCTCCGGGCCACTTCTCTAGCACCCTCAGCTGCACGGCAGCACAGACTCAGGCAGACATGGACCACATCTATTCCCCTCCACCACCTTATTCAGGTTGTGGCGAAATGTACCAGGACCCGTCAGCATTCCTCTCAACATCAGCGTGCCCCATCTCCTCATACCCTCCGCCATCTTACTCCTCACCCAAAGCCACAGCAGACGGCCCCGGCGTCTTTCCCATCATCCCGGACTATGCCAGCTTCTTCCAGCCGACATGCCAGAGAGATATTCCGTCCATTCCAGAAAGGAAGCCCTTCTCCTGCCCCCTGGACTCTTTCCGGGTGGCTCCACCACTCACCCCACTCAACACAATCCGGAACTTTACCCTGGGTGCACCCCCTGTACCCGAGGGTCCCCGGCTCCCTGCAGCAGCATACGGTCCCCAGAACCTTCCGCTGAGGCCGATCCTGCGGCCCCGGAAGTACCCAAACCGCCCCAGCAAGACTCCAGTGCACGAGAGGCCATACCCATGCCCGGCAGAGGGCTGCGACAGACGCTTCTCTCGCTCTGATGAACTCACACGCCACATTCGCATCCACACCGGCCACAAGCCCTTCCAGTGCCGGATATGCATGCGCAACTTCAGCCGCAGTGACCACTTGACCACACACATTCGCACACACACAGGCGAGAAGCCCTTTGCCTGCGATTTCTGTGGACGAAAGTTTGCCCGCAGCGATGAGCGGAAGAGGCACACCAAGATCCACTTGAGACAGAAGGAGAGGAAGTCGTCTGCTGCCCCCTCAAACTCTGAGCGCTCCATTGGCATCGGATCCTCAGCGGTCTGCTCATCCAGCTCGGGCCACTAAGTTCCCCTAGTTAGTTCTGTGGTTTCCAGACCCGGGTACTTAGAGTAACCCTGTCTCTGCATAGATTGGTGTTTCTTCCCTGCTCTCCCTGCACAATTTATCTGACTAATCAGCTAATTAACAAGCCTTTCCTGAGTTTAAGTGGGGGTATCAGAGCAAGGAAAGCAAATGTCAAATGTGCAGATCTGAACAGGACACCAAGGCAAGGTTTGGGGTCAACTGCCCTACATTACTAGCAGGGGAGCATGCAACACTAGGCAATATCCACGATCCAAACTTGCTGTGAAGCCAGGGGGGACCAGTTGAACACAGAAAAGCCAAAGGACATAAATGAGGGACATTGACGACAAGTACAATTCCTCAACCGGCACGTTCCTTTGACTGCTTCTTCTATCCCCCTTAGTATCGGTCGCATGTTGACTGACAAAATCGCACTTTGTTTATGATATTTAGGTCaaataatttaatgaaatatAACTTGCAGCAGCATGTGGGACTGTGTGTTCTAAAGTGCACGTTTGGTTGAGAGAGGACTTTGTGGAGGTCATTCCAACGTGACAGCTTCAAACTTGCAATAATGCAGACACTTGTGAACTTGTCACAACCGTGTTTTCTCGGCAAGCTGAAACTAACAGATTTATCGTGCCTTTGTATTGTGTCTTTTTGTAAATAGCCGCATACCTGAAGAGGCTTTGAAATAAAATTGTACAGTGGTCCTTTAATAAGAAAGTTtttgagataaaaaaatatatatttttgtataaactttgttttgtgTCGCAAGTGTTTCCATTgtggtaaaaaaacaacaggaatGTAAATAACTGGACTTATATATGTGAAGCTTGTTTTTGTAGATGTTTTCACTGATATGTTGTGTTGGGAATGAGCTAACTAATGCAGGTCCGTGACTTGCTGGCCTAACTTTCTGTCATTgtgaaagaaataataaataaaacttgaaTTAAGATA

Function

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071320 cellular response to cAMP biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0071371 cellular response to gonadotropin stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49637 lncRNA downstream 57845 16405253 ~ 16405483 (-) True G36836
TU49604 lncRNA downstream 216557 16246540 ~ 16246771 (-) True G36807
TU49603 lncRNA downstream 216798 16246079 ~ 16246530 (-) True G36806
TU49602 lncRNA downstream 219995 16243077 ~ 16243333 (-) True G36805
TU49595 lncRNA downstream 248499 16213800 ~ 16214829 (-) True G36800
TU49647 lncRNA upstream 2890 16487035 ~ 16488592 (-) True G36845
TU49694 lncRNA upstream 154447 16638592 ~ 16644565 (-) True G36882
TU49748 lncRNA upstream 258687 16742832 ~ 16752168 (-) True G36922
TU49790 lncRNA upstream 429425 16913570 ~ 16913803 (-) False LOC103043629
TU50115 lncRNA upstream 516227 17000372 ~ 17015898 (-) True G37185
XM_007255123.3 mRNA downstream 254414 16196413 ~ 16208914 (-) True LOC103021447
XM_022669187.1 mRNA downstream 437206 15874359 ~ 16026122 (-) True ank3
XM_022669186.1 mRNA downstream 611651 15841393 ~ 15851677 (-) False LOC103023209
XM_007255129.3 mRNA downstream 611651 15841393 ~ 15851677 (-) True LOC103023209
XM_007255130.3 mRNA downstream 622812 15837105 ~ 15840516 (-) True LOC103023526
XM_022669201.1 mRNA upstream 54036 16538181 ~ 16713489 (-) True jmjd1c
XM_007255111.3 mRNA upstream 306482 16790627 ~ 16793507 (-) True LOC103044660
XM_022669208.1 mRNA upstream 314372 16798517 ~ 16866094 (-) True exoc6
XM_022669207.1 mRNA upstream 314372 16798517 ~ 16863401 (-) False exoc6
XM_022669206.1 mRNA upstream 314372 16798517 ~ 16863401 (-) False exoc6
TU49443 other downstream 622843 15837105 ~ 15840485 (-) False LOC103023526
TU49397 other downstream 693799 15755613 ~ 15769529 (-) False G36677
TU50113 other upstream 531983 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 611100 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 695233 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 890039 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 948827 17432972 ~ 17466024 (-) True G37290

Expression Profile