RNA id: XM_007255120.3


Basic Information

Item Value
RNA id XM_007255120.3
length 2697
RNA type mRNA
GC content 0.44
exon number 4
gene id nrbf2
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16407964 ~ 16527247 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagcgagcgagagagagactccTGAGTCTGTTGTTTCTCTCCGTCTCTGCTGTGATCAGTCCGGTGTAACCAGAGCACCTGGTTCCGGACTAAACCCAGTGCCAATGACCGTGTGTGAGCAGCACCGCGCACTCTGATGTAGTTAATGGTCTCTACTCTGATAAGGAATGGAGGTGGTGGACAGTCCTCTGAACCTCGCCCATCAGCAGTGCAGAAAAGCAGACCGCTTTCTGGCTGCTGGGAAGTATGAAGAGGCCATCTCTTGCCATAGAAAGGCTGCAGAACTTCTGAAGGATGCAATGAAGCTCACAGAATGTGAACAGGCTCGCCTGTCTCTGGAGCTGCAGAGGGACAGTCATGTGAAGCAGCAGCGACTGATCGAGGAGAGGTGGAAGCGGTCCAGGCGAGAGGGCAAGCCAAGAATTCTCCAGACCACCCTGTCCTCAGAGCAGCCCCCTCACCTCCAGCCCGGTGCCTCTGCTTCTCCTGGCCTAGCTGCCAGTTCAGACCGTGAACGTGAGTACGACACTTGGCTGTACCTGCTGAAGAACAAGAGCCCCCACCAGGAGCCGTGCCCCGGCAGCAAGGCCCACAAAGACGACAAGACGCGGCTGGAGGAACAGCAGACCACCATTGATGACTTGCGGCGTTTGGTGGACCGGCTGGTGGGTGAGAATGAGCAGCTCACTCGGGACAACGAAAGGTTGCGGGCGGAAAACTCCCGGCTGCGCAAAGAGCCATACGCTGATGCTGACTTTGTGGAGAAGTCGGAGCTTTGGGTGCTGCCGCACGCGGCCGAGGAGCGCAAGGCTAAGGACATTCCCATCCCGCACCTGCCGCCACTAGAGATGCCTCAGGAGATCCCTCTGGAGGACCTGCCTGCTCTGGAGCTGCCTGAGGACATCCAGCAGGAGCTTCAAGAGCTGCTAGATGGAGAGAAGCTCTAGGCACCTGCCCGTTCACTTGCCAAAGGGAGACGATCGTGCTGTCTGTCAGAAGTTTGCAGACAGGGAAATTTAGTGAATTTCTGGCCTGCACAGTGGCATAGCTCTAGATGGCATAAATGGCTTGTGTTAAGCCATCAGatgctttattgttttttttttgtttgtttttttttctctctctttaatgaTCCCCCTCCTTTCCCTTCCAAGGTACTGCAGCTATTTGATATAAGAtgaaacaaactaaaaacattatgaACTCATTTTGCAAGACTTGtgcctttttaaatatttctatgGTGTAATTAAGTCCTAtgagataaaagaaaaaaagggactGATGACTGATGACAAGAATATATGTTGCTTTGTGGAAGcttgattgtaaaaaaaaaaaaaagtgctggaaGCGCTCGACTGATTTGTTCAGACTGGCATTCGTCAGGAATAAACTAGGGGCTTTCAGAGACCCCCTGTTTAAAATGcaaaagatatttttttctccccacacagacacagacagtgaGCACTGTGAACTACatcagaaagtgtgtgtgtgttagaatgagatacagagtgtgtgtgattgcgtgtttgtgtggtttCCTGACTTGTTGCAAATTGTGAAAATTGTAAACGTGGAGTTTCATTGCCTCTGTTTGTGTCCTGTCATTTCCAGTGTCCACCTGAGAAACAGCTACAGGATGATTTTTTTCAGTAGTCTGTCCTGTGGAGACCAGTGTCTTAAAGCTGGACGTCTTCTGTGCAGTTATAGTCTTAGTTATGAATTtgacacacacattttatcCAGCTTCACACAAAACCTGCTTGTGAAGAATTTCCCCACCACAAAAAATGTTGTGTTGATTTCTGGaaccaataaaaacaaattgacaaACAACCATCTACCAACTAACCAATCAAGCAATAACATGATACAGTCTCCAGTTACGCAAGGAAGCGCAGTCATTCATCATAAAGGGGGCTTtccaatgcatttttttgtccGTGTGTCTTTATTGTAACTTAGTCATTTTGTGGCGTTTTGGAATCGCAGTAGCTGCACAAATCTCTAGTCTCAGTTCCACAGCCACGTCGAAATGGAAATGGAAGAAACTGAAGCCTTTCCCAACTGTCCAAGTCAGGATATTTGCGAACTATCTCAAACATAAAgttgttttaatataatatatataaatattttgtttgttttttgtttttctgatgcCTAATTTGTACTGTAATCAATCAACAATTGATTGTTTTGATCACACAGTTAATATTTTTCAGGtaactgtgtgtttttactttGAATATGCAGGATGAGTGAGTGCATACACAATCACACAGCATATAACAATGTCAGGTTACGCTACATCACACTAATCGAGAGTAATTTAACTAGTGCCACATGCGAGAGAGAACAAGGAGTGCTtcatgtttagttttattttatttttttaatgtgatgcAGAGATGATCTGAAATGAATCATATTTGTGTCACGAAGAGGGAACCAAAtccactttttttaatttaatgttgaaATTGAATTCTTGGTTTACAGCAGTAATCAGGGTGCATCTGAATTGTTTTCTCTtccattttgtttgtttctgtgtgaTGTAAAAATCTTCAAGAATCATATGATGAAAGTGTAACTTTTTTGTTTCATGCATGAATGGCAGTTGTAGCTATAAGTATATGATGGATAAGATATTAAAATGAGGATTTATGTCACGGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49583 lncRNA upstream 305138 16213790 ~ 16214822 (+) False cabcoco1
TU49574 lncRNA upstream 308263 16211045 ~ 16211697 (+) True G36783
TU49465 lncRNA upstream 594113 15924785 ~ 15925847 (+) True G36722
TU49464 lncRNA upstream 595246 15922772 ~ 15924714 (+) True G36721
TU49448 lncRNA upstream 621795 15897181 ~ 15898165 (+) True G36705
XR_002649884.1 lncRNA downstream 1903 16529150 ~ 16540014 (+) True LOC111192379
TU49658 lncRNA downstream 13737 16540984 ~ 16569392 (+) True G36852
TU49716 lncRNA downstream 206365 16733612 ~ 16791256 (+) False G36899
TU49715 lncRNA downstream 263423 16790670 ~ 16792600 (+) True G36899
TU49734 lncRNA downstream 309279 16836526 ~ 16837964 (+) True G36915
XM_007255116.3 mRNA upstream 60047 16457415 ~ 16459913 (+) True LOC103046195
XM_022669199.1 mRNA upstream 122572 16258160 ~ 16397388 (+) True arid5b
XM_022669197.1 mRNA upstream 286121 16213955 ~ 16233839 (+) False cabcoco1
XM_022669202.1 mRNA downstream 188644 16715891 ~ 16752203 (+) True LOC103044975
XM_007255112.3 mRNA downstream 188645 16715892 ~ 16752203 (+) False LOC103044975
XM_007251304.3 mRNA downstream 402264 16929511 ~ 16943394 (+) True tubgcp2
XM_022669210.1 mRNA downstream 417817 16945064 ~ 16998115 (+) True LOC103036473
XM_022669436.1 mRNA downstream 475416 17002663 ~ 17040957 (+) True sun1
TU49230 other upstream 1079807 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 1729127 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 2056321 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 3816904 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 3953989 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 473135 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 473135 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 475193 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 674250 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 705632 17232879 ~ 17234550 (+) False cby1

Expression Profile