RNA id: XM_022669188.1


Basic Information

Item Value
RNA id XM_022669188.1
length 3286
RNA type mRNA
GC content 0.48
exon number 10
gene id rhobtb1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16149838 ~ 16175195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCATTTGAATGGGTGAAGAGAGAGCAGAGTGTATATGAAGGCTGCTCCGACCCAGAGCCCCTTCAGCTTCGGACAAACCGGATTAACAGTCAGTTCTGACAGAGCGGGACGTCACAGCGGTTACGAAATGAGCGCGCGGCGTTCAGCGTGCAGGGAATATTCTCCTTTACAGTAGAAATAAGAGCCACCGTCCTcctgtttgtctgtctttctgtccgcctgtctgtctgtttgcacTTGTCCAAGTCTCTTCACTTCATCAGTTCTTCACTgcgagaagaaaaagaagaagctgCTGAAAGAAAGAAGACGAAGAAACGCACACAAACCCAAAGGACTGAAGTGAAGAATGGATTACGAAAGACCCAACGTTGAAACAATCAAGTGTGTCGTCGTCGGTGACAACGCTGTGGGGAAGACGCGCCTTATTTGTGCCCGAGCCTGCAACACCACCTTGACCCAATACCAGCTACTGGCCACCCACGTCCCCACCGTCTGGGCCATCGATCAGTACAGAGTCTGCCAAGAGGTGTTGGAGCGTTCCAGAGACGTGGTGGATGATGTCAGTGTCTCCCTCAGGCTCTGGGACACATTTGGAGACCACCACAAGGACAGACGCTTTGCATACGGCAGGTCTGACGTGGTGGTTCTCTGCTTTTCCATCGCCAACCCCAACTCCCTCCATCACGTCAAGACCATGTGGTACCTGGAGATCAAACACTTCTGCCCACGTACTCCCGTCATTCTCGTGGGGTGTCAGCTCGATCTACGCTACGCAGACTTGGAGGCCGTCAACCGAGCCAGACGACCATTAGCAAGGCCTATAAAACCTGGAGACATTTTGCCTCCAGAGCGAGGACGAGAAGTGGCCAAAGAGCTAGGCATTCCATATTATGAAACAAGTGTCTTCGATCAGTTTGGCATCAAAGACATCTTTGACAACGCCATCCGAGCCGCTCTCATCTCTAGACGCCACCTTCAGTTCTGGAAGTCCCATCTGCGGAGGGTCCAGAAGCCATTACTGCAGGCGCCCTTCCTCCCTCCCAAGGCCCCTCCGCCACTGATCAAGATCCCAGAATGTCCCCTGAACAACCGGGACGGACCCAGGCAGCTTCTAGAGAACCCCCTCTGTGCTGACGTCATGTTCATCATTCAAGAGCACATCCACGTGTTTGCCCACAAGATATACTTGTCTACCTCGTCCTCCAAGTTCTACGACCTCTTCCAGATGGACTTCTCTGATGAGTCCCAGTGCTTGGTGGTGACGGAGCGCCACGGGCGGGACCAGCTGATGCGGACTCTCAGCTTGGACACGGAGGAAGACGTGGCTGTGTTGCCCAATCTTTCGCCCTGTTCCCTACGCGCTTCCAAGAGTGACGGGACTCTGAAGATAATGAGCTTTAGCGGAAGACATCGTCGCACTAAGCTGTCCCTGGCGTCCTGGAGTAAAGCGTTCTACAGCATCCACAGAGAAACTGTGGTCAACCCAGTGACGGGCACTCCAGCTCCGATGACGGTGGTGAAGATGGACCACTCCATCCAGCTGGGGCCCTTCAGCGCAGTGCTGCGGTTTCTGTACACGGGGGAGCTGGACGAGAAGGAGAAGGATCTGATGAAGGTTGCTCAGATTGCTGAGATCCTGGAGGTGTTTGACCTGAGGATGATGGTTGAGAACATCATGAACAAAGAGGGTTTCATGAATCAGGAGATCACAAAAGCGTTCCATGTGAGGAAAGCCAACAGGATTAAGGAGTGTCTGGCCAAGAACAATTTCACAGATGTGGTGTTCAGGCTGGATGACGGCACCATCAACGCACATAAGCCTTTGCTGATCTCCAGCTGTGATTGGATGGCTGCTCTGTTTGGAGGCTCGTTCATTGAGAGTGCAAACAATGAGGTCTCCTTCCCCAACACCAGCAGGGTGTGCATGCAGGTAGTGCTGGAGTACCTTTACACCAATCAGCTGTCGCCCATGGCCGACCTGGACCCAATGGAGTTAATCGCTCTGGCAAACAGACTGTGCCTTCCCCGCCTCATTGCCCTGACAGAGCAATACGCTGTGAGCGAGTTGGTGAAAGCCTTTAAAGATGGACAAGACATCGATGGTGAAGTGCTCACCTATCTGGAGCTTGCTCAGTTCCATAATGCCAGCCAACTTGCTGCCTGGTGCTTGCATCACATCTGCACTAATTACAATTGTATATGTGCCAATTATCGCAAAGAGATCAAGTCCAAATCACCAGAGAACCAGGAGTACTTTGAGAAGCACCGCTGGCCTCCAGTCTGGTACCTGAAAGAGGAGGACCACTACCAGCGGGTGAAGAAGGAGCGCGAGAAGGAGGACGTGGTCCTGAACAAGCATCACTCGCGCCGCCGCTGGTGCTTCTGGAGCACCTCTCCCGCAGtggcctgagagagagacagcacctCCCTCAGGGCCGTCCTGCTAACGCTAGCATTTTCTGTCTTAACTTTCAGATAATGGATCTGACAATGCAATgtcatctttttcttcttttttttttttttttttctaaactccTGCGCAGTAGTAATAGGTCAAGCAGACGTCCAAATGGTTCAGAGCACAATCCAAATGTGTCCAAATAATACAGGTCGACACATTGTATGCTGTTGTCCTGCGAAACTCTTTATTGGTAGAATCTATTGGCAGTGTAGTTTTAATAAGAGGTGAGATCAATgactaaatgaatgaatgaatgaataataatgagtcaatatgtgtaataataattcagttattcaataatatcaataacaataataatcatGTTTTAGGCTTGCTTGTGTGCCTCACAGTAGCCaccacagtatacacacacaccataaatGGAATGTCACCCAGAACTATTATTAGGGACATGTCAAATTCTTTTTGCCCCCAAATTctatttttgttagtttttttttctaatttttttgtcttaatAGCTAGGATTCATTTTAAGCCACAATTCCATGATGTGTCTGCATTTTTGCATCACAGAAATCCACATAGGACCCTATGTTACGTTGCATTGTCCTTTGATAGGTCTGTAGGTACAAAACATTGTGCTAAACATTGTCTTTTTGCCATATTTtatcagaaatcagaaatacattttaagtctCAGTTCTGTGATTCCCTTTGTAtcctatagaaaaaaaacatactctTGCTTTTTCCCTTATACAGTAGGTCTAGGTGCGCATCCTTTGTACAGTTCTTCAAGTGCTAAATTGCAATTGCTATgctactaataaataaaaaaaacaaactctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49465 lncRNA upstream 223991 15924785 ~ 15925847 (+) True G36722
TU49464 lncRNA upstream 225124 15922772 ~ 15924714 (+) True G36721
TU49448 lncRNA upstream 251673 15897181 ~ 15898165 (+) True G36705
TU49450 lncRNA upstream 263965 15882457 ~ 15885873 (+) True G36707
TU49449 lncRNA upstream 273954 15874414 ~ 15875884 (+) True G36706
TU49574 lncRNA downstream 35850 16211045 ~ 16211697 (+) True G36783
TU49583 lncRNA downstream 38595 16213790 ~ 16214822 (+) False cabcoco1
XR_002649884.1 lncRNA downstream 353955 16529150 ~ 16540014 (+) True LOC111192379
TU49658 lncRNA downstream 365789 16540984 ~ 16569392 (+) True G36852
TU49716 lncRNA downstream 558417 16733612 ~ 16791256 (+) False G36899
XM_007255131.3 mRNA upstream 337985 15808205 ~ 15811853 (+) True LOC103023844
XM_022669181.1 mRNA upstream 477394 15621311 ~ 15672444 (+) True LOC103033971
XM_007255145.3 mRNA upstream 629244 15472044 ~ 15520594 (+) False LOC103028270
XM_022669194.1 mRNA downstream 38604 16213799 ~ 16233839 (+) False cabcoco1
XM_022669193.1 mRNA downstream 38760 16213955 ~ 16233839 (+) True cabcoco1
XM_022669197.1 mRNA downstream 38760 16213955 ~ 16233839 (+) False cabcoco1
XM_022669195.1 mRNA downstream 38760 16213955 ~ 16233839 (+) False cabcoco1
XM_022669196.1 mRNA downstream 38760 16213955 ~ 16233839 (+) False cabcoco1
TU49230 other upstream 709685 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 1359005 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 1686199 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 3446782 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 3583867 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 825187 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 825187 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 827245 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1026302 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1057684 17232879 ~ 17234550 (+) False cby1

Expression Profile