Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007255143.3 |
| length | 1444 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 12 |
| gene id | psmc5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035900.1 |
| NCBI id | CM008303.1 |
| chromosome length | 25652880 |
| location | 15541100 ~ 15547570 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0000502 | proteasome complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0031531 | thyrotropin-releasing hormone receptor binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0017111 | nucleoside-triphosphatase activity | molecular_function |
| id | description |
|---|---|
| K03066 | PSMC5, RPT6; 26S proteasome regulatory subunit T6 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_002649882.1 | lncRNA | downstream | 13803 | 15515982 ~ 15527297 (-) | False | LOC111192377 |
| TU49355 | lncRNA | downstream | 13881 | 15514858 ~ 15527219 (-) | False | LOC111192377 |
| XR_002649881.1 | lncRNA | downstream | 14000 | 15515982 ~ 15527100 (-) | False | LOC111192377 |
| TU49356 | lncRNA | downstream | 14626 | 15514858 ~ 15526474 (-) | True | LOC111192377 |
| TU49335 | lncRNA | downstream | 86290 | 15382512 ~ 15454810 (-) | True | G36632 |
| TU49365 | lncRNA | upstream | 1309 | 15548879 ~ 15549079 (-) | True | G36657 |
| TU49375 | lncRNA | upstream | 60521 | 15608091 ~ 15679306 (-) | False | G36664 |
| TU49374 | lncRNA | upstream | 126213 | 15673783 ~ 15679306 (-) | True | G36664 |
| TU49403 | lncRNA | upstream | 199830 | 15747400 ~ 15761183 (-) | True | G36677 |
| TU49413 | lncRNA | upstream | 208043 | 15755613 ~ 15761608 (-) | False | G36677 |
| XM_022669170.1 | mRNA | downstream | 425988 | 15094604 ~ 15115112 (-) | True | LOC103031644 |
| XM_022669171.1 | mRNA | downstream | 430010 | 15094604 ~ 15111090 (-) | False | LOC103031644 |
| XM_022669169.1 | mRNA | downstream | 456078 | 15040534 ~ 15085022 (-) | True | med24 |
| XM_022669166.1 | mRNA | downstream | 679317 | 14834452 ~ 14861783 (-) | True | c4h16orf62 |
| XM_007260030.3 | mRNA | downstream | 743888 | 14785952 ~ 14797212 (-) | True | c4h10orf88 |
| XM_022669178.1 | mRNA | upstream | 5021 | 15552591 ~ 15565917 (-) | True | smarcd2 |
| XM_007255140.3 | mRNA | upstream | 25210 | 15572780 ~ 15580758 (-) | True | LOC103026640 |
| XM_022669179.1 | mRNA | upstream | 35055 | 15582625 ~ 15611422 (-) | True | LOC103026344 |
| XM_007255139.3 | mRNA | upstream | 35055 | 15582625 ~ 15607667 (-) | False | LOC103026344 |
| XM_007255138.3 | mRNA | upstream | 175689 | 15723259 ~ 15737075 (-) | True | LOC103025516 |
| trnal-caa_19 | other | downstream | 584343 | 14956645 ~ 14956757 (-) | True | trnal-caa_19 |
| trnal-caa_18 | other | downstream | 584750 | 14956238 ~ 14956350 (-) | True | trnal-caa_18 |
| trnal-caa_17 | other | downstream | 585156 | 14955832 ~ 14955944 (-) | True | trnal-caa_17 |
| trnal-caa_16 | other | downstream | 585562 | 14955426 ~ 14955538 (-) | True | trnal-caa_16 |
| trnal-cag_9 | other | downstream | 585763 | 14955227 ~ 14955337 (-) | True | trnal-cag_9 |
| TU49397 | other | upstream | 208043 | 15755613 ~ 15769529 (-) | False | G36677 |
| TU49409 | other | upstream | 208043 | 15755613 ~ 15769491 (-) | False | G36677 |
| TU49415 | other | upstream | 208043 | 15755613 ~ 15769529 (-) | False | G36677 |
| XR_002649883.1 | other | upstream | 210820 | 15758390 ~ 15758863 (-) | True | LOC111192378 |
| TU49443 | other | upstream | 289535 | 15837105 ~ 15840485 (-) | False | LOC103023526 |
