RNA id: XM_022669174.1


Basic Information

Item Value
RNA id XM_022669174.1
length 3987
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC103028270
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15441567 ~ 15520594 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGCAGCTGAGGCGCAGCGGCTGAACAGCGCAGCGGTGCTGCTGAGTCCCCCCGCTCCGGTACTCTCTCTGTTTCACACGCGTCTGTCTATCGGTAGACGGTTTTACGTTTTTTTCCTATCGTTTGGTCGCAGCTTCTCTTGTTTAAATCCTCTGGAACGCTGAATGAAAGCTGGACAGGACGAGCGGCTGAGCTTTACTGAGGAACAGGAGGAGAACCTGCGCGTCTGTAGCCTCTTCTCACCTTCACACCACACTCCAGTCCAGAGAGCTGTAGGAAGGCCCTGACATCCCAAGACACCAAAAATGCCTGTTGCATCAGCCAGCTCTGACTCAGCGATGCACAGCGTGCTGGACACCCTGAGTGACAGCACCAGCTCAACCACCGCCAATGACCTGGACCTCATCTTCCTGAAGGGCATCATGGAGAGCCCAGTGGCTCATGAGCGGTTTGAGGAGCCAAAGCTGGAGGCGGTGAGGGACAACAATGTGGAGCTGGTGCAGGACATCCTGAAAGACCTCACACCCCTCACCCAACAGAGCCAGACTGCACAGGAACTGGCGTGCATACTCAGAGAGCCACACTTCCAGTCACTACTGGAAACACATGATTCTGTGGCCTCTAAAAGCTATGAGACTCCACCCCCCAGTCCATGTGCCTTCATGGACCCCGCCTTCAACAACCAGCCCGTTCCCCCCGATGCGGTCAGGATGGTCGGCATTCGCAAAGTCTCTGGAGAACACTTGGGTGTCACATTCCGTGTAGAAGGGGGTGAGCTGGTAATTGCGAGGATTCTGCACGGAGGAATGATCGACCAGCAGGGCCTCCTGCATGTGGGTGATGTCATCAAGGAGGTGAACGGAAAAGAAGTGGGAAATGACCCCAAAGTGCTGCAGGACATGCTGAAGGAGGCCAGCGGCAGCGTGGTGCTCAAAATCCTCCCCAGCTACCAGGAACCACACACACCCCGGCAGGCCTTTGTGAAGTGCCACTTTGACTATGACCCAGCTCATGATAACTTGATCCCCTGTAAAGAGGCCGGTCTCCGGTTCAGCAGTGGAGACATCCTGCAGATCTTTAACCAGGAGGACCCCAACTGGTGGCAGGCGTGTCATCTAGAGGGCGGCAGTGCAGGTCTGATCCCCAGCCAGCTGctggaggagaagaggaaggCCTTTGTGAAGAGAGATCTGGAGCTCAGCACTGCAGGACCTCTGTGTGCAGGCATGGgggggaagaagaagaagaaaatgatgTACCTGACCACCAAAAATGCAGAGTTTGACAGGCATGAGCTTCGGATCTACGAAGAAGTGGCCAAGGTTCCACCATTCCGGAGAAAGACTCTGGTGCTGATTGGAGCTCAGGGAGTGGGACGTCGCAGCCTGAAGAACAAACTGCTTGTGTCAGAACCGCACCGCTATGGCACCACCACACCCTACACGTCTCGCAAACCAAAAGTGGACGAGAAGGAAGGGCAGATGTATCTTTTTATGTCAAGAAGTGAAATGGAGGCAGACATTAAAAACGGTCGTTTTCTGGAACATGGAGAGTATGATGGCAACCTGTACGGCACCAAGATCAACTCCATCCATGAGGTTGTGGACTCGGGAAAGATCTGCATTCTGGACGTCAACCCACAGGCCCTCAAAGTCTTGCGGACATCAGAGTTTCTCCCGTATGTTGTGTTCATTGAAGCTCCGGACTTTGAAGTACTGAAAGACATGAACAGATCTGCCATTGAGGCTGGAGTTATCACCAAAAACCTGACGGATTCAGAGCTGAAGCGGACGGTGGATGAGAGTGAGCGGATCCAGCGGGCGTATGGTCACTATTTTGACCTAACCATTGTTAATGATAACCTGGACGGAGCATATCGCAGCCTGAAGGGGGCACTAGAGAGACTGAGCACAAATCAGCAGTGGGTGCCAGTGAGCTGGGTTTTCTGAAGGTTTCAGATTAGAGACTTTCTCCAGACAGGAAGCAGTCAGTCGGTCCTTCATACAGATGAGGTTTAAGAAAACAGGTGTTTGGTAGGACGACAAGCTATCATTACAGCTCTCATTAGGAACTTTCAGCAGAAAGTAGTTCCATGAGCTCCAGTCATCGCGATCGAAGCAATTCGCCTCACGTAGCTTATTGCACAAAGACTGCTGAGGTGTTACTACAaaagaatatttattattttgtacagaAAAGAACAAATGGAGATATACTTGTGTTCGTTTGAAGGTGTGGTAGATTTGAGAGTGAATAATACTGTACATGTGGGTAGTCGACACTGTATATTTGTACAGATGCTGTGATCTACTGTTTTAGAGCTTGTGGCTTTTGTTTTATCGACAGTTGTTTGCAGTTTTGAGATAAAGGAGATGGAATATCAGATGAGTAATGCTATTGTTGTGATTTCAGATTTTACTTCATGATGACTGTAAATAACTAGAGATTATCTAACATTTACAAAGAAACGATACTTACGTCGTTCAAGATCGTAATTGCAATCGTAATTGTTTTCAGAATTTGATACCTAAACCAAATGGAAACACAACTAAATATACAGGGTGTCTTAAAATAAGGAAACATCTAtactaaaaaaacagtttggtaGCTGATGATTCAAATTTAGACACAAGCTGAGATAGAAAGGGGAAGCTTGTTATGTCATCTTCAAAGATGCCATCCtggattagggctgcaactaaggATAATTTTCTTGTTGACTAATCTATGGATAAATTTTAGTCATTACTTAGTCGAGGAGTCAACAATTTTTGCTGCCATGCTCTCAATCTCAGCTTCCTGTGGACAATGCTCTTGTTCTAATGCATGGTTTACCTTacctgtttaaataataattagaaattttaaataattacctAGGAAACATGAAGAGGAAACGTGATAGCTTAATCAAAAGCATGTGTTACATCAAATTACCTAAACATTACAACTAAAGTgcacaaacaaaactgtaattaacaaaaagactttcttttgaagtgctggatgttaatctacacagatttctctcataaaaactgtttatttgggtgagtaaagcactttcgttatttacagtaagcttagattcctgaatttctccagcactgaggctggagcattagcattagcggctaaccactccATCACAGCTAGCAGGGGTAAGAAGCAAGCTACAGGGTGATAATACGGTACGCCTggttaatggctaatgctaatgctactccagcagtgctagccagggttagcagcaggctacactCTGGAAATACTCATTTTCAAATggggaaatagcagttagcggctaatgctactccagccccagtgctaaactaaactgaaactcctgtataaagctggaCTTCAGTGGAGttactttactgctccttacaacctgactgataaaaatcATGCATAAAATGCACTgatttataaggtgcactgacgagtTTTGGGATAATTTtaagtgcgaaaaatactgaaataaattgaCACTTAAAATTAGTTACTAATCACTGCAGCCCTAACTTGGACTCAACTTCAGTTTTCCAAATGTGTGTAACGTATCGCAATTTcactaaaaaaagattaattggACAACATTTTGTGGGGGCATTTGTGTGTACCAGTCCTTATCTTGTAAATAAAGTAGTACCCACAtgattttcaaacatttaaGATGGCCGCCATGTTGGTGTCTTGACTGAACAAATTTTCCCCTTTAGAAAAACTGAATCACCACTTATAGAAAACCACTTATGGGCGTCTTCTTAATTTAAAGACACACTGTACCTTTTTTTTAGGATTGTTTTGGAAATGTAGGCGAGTCACAATTCTAAAACAATTCCTGAGTCTAATAAACTTAAATACTATGACATAGctctttgttaatttatttgctttttgaTATTGGAATCTACTGCTGGTTCTGTATCCCTGATGTGTTTCTCAATCAGTTCAAATACAAGTAAAAATGACATCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49220 lncRNA upstream 61640 15376282 ~ 15379928 (+) True G36560
TU49153 lncRNA upstream 241495 15199822 ~ 15200073 (+) True G36532
TU49145 lncRNA upstream 260490 15177106 ~ 15181078 (+) True G36524
XR_002649903.1 lncRNA upstream 289440 15150171 ~ 15152128 (+) True LOC111192405
TU49132 lncRNA upstream 351192 15086356 ~ 15090376 (+) True G36512
TU49243 lncRNA downstream 20520 15541114 ~ 15546201 (+) True G36582
TU49244 lncRNA downstream 20520 15541114 ~ 15547526 (+) False G36582
TU49245 lncRNA downstream 23461 15544055 ~ 15547113 (+) False G36582
TU49246 lncRNA downstream 23461 15544055 ~ 15547526 (+) False G36582
TU49251 lncRNA downstream 87498 15608092 ~ 15679320 (+) True G36584
NM_001291253.1 mRNA upstream 1411 15432829 ~ 15440157 (+) True LOC103028998
XM_007255149.3 mRNA upstream 18473 15407485 ~ 15423095 (+) True LOC103029312
XM_022669172.1 mRNA upstream 35212 15393015 ~ 15406356 (+) True LOC103029630
XM_015607336.2 mRNA upstream 57680 15319767 ~ 15383888 (+) True LOC103030376
XM_022669181.1 mRNA downstream 100717 15621311 ~ 15672444 (+) True LOC103033971
XM_007255131.3 mRNA downstream 287611 15808205 ~ 15811853 (+) True LOC103023844
XM_007255127.2 mRNA downstream 629244 16149838 ~ 16175195 (+) True rhobtb1
XM_022669188.1 mRNA downstream 629244 16149838 ~ 16175195 (+) False rhobtb1
XM_022669189.1 mRNA downstream 629244 16149838 ~ 16170961 (+) False rhobtb1
TU49230 other upstream 1415 15432831 ~ 15440153 (+) False LOC103028998
TU49039 other upstream 650735 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 977929 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2738512 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2875597 12551780 ~ 12565971 (+) True bnip3
TU49796 other downstream 1479788 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1479788 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1481846 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1680903 17201497 ~ 17205033 (+) True phf5a
TU49869 other downstream 1712285 17232879 ~ 17234550 (+) False cby1

Expression Profile