RNA id: XM_007255149.3


Basic Information

Item Value
RNA id XM_007255149.3
length 2919
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC103029312
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15407485 ~ 15423095 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGTTGAAGTTTCCGGTGTTGTTTAATGCTGCGGGACCGAGCCTCGCTCTGTGGAGGGAGATTTAACTtgtgcttagcttagcttagcattcCTCACTCTCGAGCAGCAGCGTTTCCAGCAGGATGGAGACGAGTGAAGACATCAGGACCACGCCGAGGGGCTTCTACTGCAAACTGTGCAGCATTCACACCCCTAACCGGCCGAGTCTGGAAGCACATTTGAAAGGAAAGAAGCACCAGCACCTCTGCAGGCTGCGGAGCAAGAGGGATGCTCAGGTGGAGAGCAGCATCTATGTCAGCGGCATTAAACCGACTACATCCAGGACGGAGCTCGCTGAGTATTTTGAGCAGTTCGGCCCTGTGTCTGAAATAATCATGGACAAGGACaagGGTTTGTACTCCATAATCGAGTTCAGTGAAGTTAAGAGCACGCAGGCTGTGCTGACTCAGCTGGAGCACCGCCTGCAAGGACTGAAGCTCCGGGTGAAGCCCAGAGAGAAGAAGGAGTTTAAGCTGGCCAGCAAGCCGCCGGACGCCAAGAAATCCCATATAAATTTGGAGAAGCTCAACTATGATCTGTGCCAAACTGCCTCTGTCAATGAGCAGATGCAAAAAGTGGTGGAGACCCTACAGCTGAGTGAAAGTGACCAAAACAGTCGAGAACTTCTTGCTGAGCTGCTGGAGGAAGTGTTTACAGAGTTCCTGCCAGACTGCCAGATCATACCTTTCGGCTCCTCTGTGAACACGTTTGGTGTTCAGTCATGTGACCTGGATCTGGTCTTGGACCTGGAGAACACGAAAGCCTTCCAGTCTCAGGCAAAGAAATCTGAGAAGAAAGGAGAACATAATTCTGAGGACGGTGACTCTGAAGACTCCATTCTCCCAGAGATTGATCTCAACACAGCCACCCCGGCCGAGTTGCTGGACTTGGTGACGGCCGTTCTGAGAAAGTGTGTGCCAGGAGTTTACAAGGTCCAGCCTCAGAAGACAACGCGACTTCCTTTGGTCAGGTTCATCCATCGTGACCTCAATTTACAGGGGGACATCACCATAAACAACAGACTGGCAGTCAGAAACACCCGTTTCCTGCAGCTTTGTTCTGGGCTGGACTCCAGAGTGCGACCGCTGGTCTACACAGTGCGATTCTGGGCCAAACAGAAACATCTAGCAGGGAATCCTTTTGGCGGTGGGCCATTGTTGAATAACTATGCCCTAACGCTGCTGGTCCTGTTCTACCTGCAGAATGTAGACCCACCTATACTGCCTACTGTGGAGAAACTCAAGAGCATGGCATgtgaggaggaggagtgcGTTATTGATGGTTGGGACTGCACCTTCCCCAGTCAGCCAATTAGTGTTCCTCCAAGTAAAAACACAGATGATCTCTGCACTTTGCTTCACGGTTTCTTCAGCTTCTACTCCAAGTTTGATTTCTCTGGATCCGTGGTGTCTCTGCGAGAGGGTCGTTCTCTCCCCATCGCCAGCTTCCTCAGCAGGGATGAGGAGATGCCCGATACTGCagacagctccagctccaaacACAAAAAAGCTGCTGGTCCAAAACTGGGTCCTGTAAACATCCTGGACCCGTTCAACCTTCACCACAATGTGGCAGGGAACCTCAGCGAGCGGACACACAGACACCTCCTCCGAGAGTGCAGCGAAAGCGAGAAGTACTGCCGCAGTCTACAATACCAGCGCAAGTCTGCCAAGGGCAAATCCTGGGGCCTGGTGCGGTTGTTTGCCCCTCGTGTCGAGGGTGGTGCTGGATCCCAGGGTGGCACAGAGAGGTCCCTGAAAATTAGCGTCCCCTTCCAGGCCTCTGTTTTGCCTGAATCCCTAAACAAGAAGTTGAGCTCGTCTGGAGACGCCTTCCGGCTCATCTGGTTTGAGCAGCTGTGCTCTGCGGTGGAGGCTTTGTTTAAAGACATTCTCAAGTGTACCCCGGCTGAGGAGCCTGTGAGCACTCAAGAGCAGAACAAGACTGGAGGAGGTGAAGAGGAAGTGAACAATAATGACAGTCTTGAAGGTTCCAGCAAACAAGCAGCATCCAAGCCTGGGAAAAAGAGGCCTTTGCCAGCTGAAGAAAGctcatcttcctcctcctcaaAGGGAAAAAGACGAAGGCTGGACTCTTCAGCCAACCTCCCAGAAAAGGCCTGCTGGTTCTGGGCTCAGAGACACAAGGTGTGGGCCGGCCGCAGGAAGGTCCGAAGAGATCTGCTGAAAACGAGCGACGAGGCCTCCAAGCCTGAAGGAGGGTGTAGAAGCATTGAAAGCAGGGTAACGCAGTGCATCGTTGAGAAGGAGGAGGACCCCAAAGATCTGGTGGAGTTCAAGGTGGACGCGGAGGTATTGGGTGGAGGAGAAAACACAAAGGCAGTGCTCAAGTTTACGCCGACGAATGACCTTGCAGGATATTTTCAGgacttctttcattttctcgAGTCATTTCTGCCTAAGATGGTGGAAACACTGCTATCAAAGCCAgagtagttttttttgttgttgctgtttcTGAATGTGTTTGCCCTCAATACGCATGTCCTCATTATTGTTTTTGCGGTTAATACAGGTTCGAAATAAATTTTGAACTACTTTTGTAGTGGTAATAAAATGCCTTGAAAGAGTTATAATCGAGATATTACAAAAAATTTGGTAATTAACAACAATCCTTTGGCATGGTTTTGTTgaactagttttctttttttgttaagttgtTAAGATTAATAATTGTTACTTTTTCTTGTACGACAAATGTTTTGTTATGAACATTTTAATAGTTTctgtttatgttgtgttttgggttgatttattttcatacaaaaaCTAATGTTTGTGCCCAAGTACAGATTTCAGCTTACTGAAAGTAGAGCAAGCTGAACACGAAGCTtattaaacaagaaaataagCGAAAA

Function

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0016180 snRNA processing biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function
GO:0050265 RNA uridylyltransferase activity molecular_function

KEGG:

id description
K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49220 lncRNA upstream 27557 15376282 ~ 15379928 (+) True G36560
TU49153 lncRNA upstream 207412 15199822 ~ 15200073 (+) True G36532
TU49145 lncRNA upstream 226407 15177106 ~ 15181078 (+) True G36524
XR_002649903.1 lncRNA upstream 255357 15150171 ~ 15152128 (+) True LOC111192405
TU49132 lncRNA upstream 317109 15086356 ~ 15090376 (+) True G36512
TU49243 lncRNA downstream 118019 15541114 ~ 15546201 (+) True G36582
TU49244 lncRNA downstream 118019 15541114 ~ 15547526 (+) False G36582
TU49245 lncRNA downstream 120960 15544055 ~ 15547113 (+) False G36582
TU49246 lncRNA downstream 120960 15544055 ~ 15547526 (+) False G36582
TU49251 lncRNA downstream 184997 15608092 ~ 15679320 (+) True G36584
XM_022669172.1 mRNA upstream 1129 15393015 ~ 15406356 (+) True LOC103029630
XM_015607336.2 mRNA upstream 23597 15319767 ~ 15383888 (+) True LOC103030376
XM_007255152.3 mRNA upstream 24774 15224452 ~ 15382711 (+) False LOC103030376
XM_007255155.3 mRNA upstream 24774 15348632 ~ 15382711 (+) False LOC103030376
XM_007255166.2 mRNA upstream 271582 15134302 ~ 15135903 (+) True gjd3
NM_001291253.1 mRNA downstream 9734 15432829 ~ 15440157 (+) True LOC103028998
XM_007255146.3 mRNA downstream 18472 15441567 ~ 15520594 (+) False LOC103028270
XM_022669173.1 mRNA downstream 18473 15441568 ~ 15520594 (+) True LOC103028270
XM_022669174.1 mRNA downstream 18473 15441568 ~ 15520594 (+) False LOC103028270
XM_022669175.1 mRNA downstream 18473 15441568 ~ 15520594 (+) False LOC103028270
TU49039 other upstream 616652 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 943846 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2704429 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2841514 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 3036523 12366540 ~ 12370962 (+) True G35967
TU49230 other downstream 9736 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 1577287 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1577287 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1579345 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 1778402 17201497 ~ 17205033 (+) True phf5a

Expression Profile