RNA id: XM_007255159.3


Basic Information

Item Value
RNA id XM_007255159.3
length 1770
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC103032173
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15032389 ~ 15035954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actgaacataaattaaCACAATTGATTATCAGACGGAAGAGGGGAAATAGTGAGTTTCATCATCGTGAATGACATCAGGGAGTTTCCGCTTCACAGCATGGTTACTTAAAAAGCACTACTCCTCAAAGTCGGCAGCCAGTATCTCCTCTGTTCACTGAAACTGTCACAAGGCAGCCAAGCTAATATGCACCTCTTTCTCGGACTCCCCCTGACTCTATGTGCCTTGAGCCTTGTGAGCCCTGCACCCACGCCGGCAATGTGGAGAGACATGCAGAATCCTGCCTTCGAGAACGCTCTGGAAAACGGGCACAGCCTTATCAGCAAGATCCTCAACGACACTCCTGCAGCGCACAAGGCTTGGATCCATACTGAGagtctgTCTCTGGACGGCAATGACTCAGGCAAACTCCAGTACCTGAAGGAGGTCCTCAATTTAACCACAGCACCAGCTCTCAAACCCATCTCGGACAGCTTAAACCTGGGCGATTGCTTGGGTCAGATAGCTGAAGGTCTCAGGTTACACCAAACTTTGCTGACAGTGGTCAGCAACCTGGCGCTCGTCAAGCCTGAGGAGGTGGATGGACTTCTGTACGACATCCGAGATCTTCTAATACAGGTCAAAAAGATGCAGAGCCAGACAGGAGTGACAAGCGCCCCAGAAACCCAGGAAGACCTGAAGAGTCAGTTGCAGAAGAACCTCGCTCCTCAACTAGAAGATGAATATACGTCACAGGTAGCAGCACACCTGGTCCTGCTCCACCTGCGGGATTTCAGCCAGGACGTCAGCCGAAGCTTCCGGAGCATGCACTCGATCTTATTTCCTGACTCGGACAGCCAGACGACGGTGGCACTGAACTGATTGGTCGAGCTTATTAGGGGCTGCAGGAAAAGGACAGTTGTAAAGGGATGTAAAGGGGACGCCGCCTTATTCACCGTTAGCAACATCGGTACAACACCGCATCTTGTGTCTTGTTTACTTTTATACgtaacatttttttcacataCAAACCGAGAACCACGTTagaagaaacacttttttttttcttttgatgttTACTCAAACTGAGAAAAAATGCATGACCCGTAACGCAACTGTGAGcagtagaaacaaacacaaatgcCTCACAGTCATTTGAACACCATTCTGATCTCTCCAAGTGAagaaacccactgtgtgttgtGTCTTATCATGTGATGAAAGTGTGATGAATgtaaggatgatgatgatgatgagtgtTTTCCAGGCCAgcctttctatttttttcttccctttttttcttctcatacCCACAAGTTCCTGCCCCTTCTTGATCATCTGAATCAGGCGCACTACGTATTTATTGATGCAATGAAATTTTGGTACATtggtatttattattaagttatttatttgtatttatttttttatttattgtattattattatgaagatgatgatgttaCAATTAATGTTAATGCCATGactatttatcatgttttatttttattatcaccGTTTGACTTCTGAGTCATTTCGTGAGTTGCTGCTGTGTCACTTCCTAAACGTTCTATTTATGAGAACACTCCTTGCGCAACATTATCTTATGTTAGGAAGTTTAGTTTCTGAGGAAATGCACACAGCGGTTTTAttgatcatatatatataacattttttttaatgttatatgtTTATTGAAAAACAATTGTAGCGCTGTATCGTAGTGCATcatattgtatgttttatttttataacaaaaacaaataaatgccaaacactttttaaaaacccAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49043 lncRNA upstream 238053 14793471 ~ 14794336 (+) True G36442
TU49037 lncRNA upstream 245088 14786050 ~ 14787301 (+) True G36437
TU48971 lncRNA upstream 413755 14616850 ~ 14618634 (+) True LOC111192375
TU49115 lncRNA downstream 1824 15037778 ~ 15037977 (+) True G36499
TU49121 lncRNA downstream 17088 15053042 ~ 15064113 (+) True G36503
TU49130 lncRNA downstream 41830 15077784 ~ 15081345 (+) True G36510
TU49129 lncRNA downstream 43172 15079126 ~ 15081345 (+) False G36510
TU49131 lncRNA downstream 45610 15081564 ~ 15083940 (+) True G36511
XM_007255160.3 mRNA upstream 41090 14967880 ~ 14991299 (+) False LOC103032486
XM_007255161.3 mRNA upstream 41090 14968126 ~ 14991299 (+) True LOC103032486
XM_007260032.3 mRNA upstream 198042 14823653 ~ 14834347 (+) False get4
XM_022669168.1 mRNA upstream 198042 14824044 ~ 14834347 (+) True get4
XM_007260031.3 mRNA upstream 210226 14798910 ~ 14822163 (+) True LOC103041718
XM_007255156.3 mRNA downstream 80870 15116824 ~ 15133253 (+) True top2a
XM_007255166.2 mRNA downstream 98348 15134302 ~ 15135903 (+) True gjd3
XM_007255152.3 mRNA downstream 188498 15224452 ~ 15382711 (+) False LOC103030376
XM_015607336.2 mRNA downstream 283813 15319767 ~ 15383888 (+) True LOC103030376
XM_007255155.3 mRNA downstream 312678 15348632 ~ 15382711 (+) False LOC103030376
TU49039 other upstream 241556 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 568750 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2329333 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2466418 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2661427 12366540 ~ 12370962 (+) True G35967
TU49230 other downstream 396877 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 1964428 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1964428 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1966486 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 2165543 17201497 ~ 17205033 (+) True phf5a

Expression Profile