RNA id: XM_007255166.2


Basic Information

Item Value
RNA id XM_007255166.2
length 1602
RNA type mRNA
GC content 0.45
exon number 1
gene id gjd3
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15134302 ~ 15135903 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCGGACTTGTACTAGAAAGCGGTTGGGCTCTGTGGATCCATGTCCATTCAGTTAGCCAGTCCTGGACTTAAAATTTGACTCTGAATGACTGAGAGGCCTATCATATCTGCTGTTGCCCTTGGACCAAAGCAATTATGAGGACCTAAAGTTCTGGTGCTTGGGAATCCACTTGGAATACATGCAAATGGACatggtcttttttttcccccaagatGGTAGGAGCTAACCATAAAATATTACCCCTGGTGGATATCATCATTTCAGTTTTTTGTCTAGTGGAATTAATTTGGGTTTGACTTGAGAATATTGGACAATGGATAAACTTCTAGTCTTGGCAAACGTCATCGTTTCCAGCCAGTAATCTCAAAATTCAAGGAAAAAGCTTATTTCTGGCTTGCTTGGACCAAAAGCTTTACATTTCCACCTTCCGCCATGACTGATTTTGGTTTCCTTAGTGGACTCTTCGAGTCACTCCAGGCGAACTCGCCCATGCTGGGCCGTTTTTGGCTGCTCCTCATGCTGGTCTTCAGGATGCTGATCCTGGGAACGGTGGCCAGTGATATGTTTGAAGACGAGCAAGAGGAGTTTTCGTGCAACACGTTGCAGCCCGGCTGTAAGCAGGTTTGTTATGACCAGGCTTTCCCTATCTCCCAGTATCGCTTTTGGGTCTTCCATATTGTGCTCATCTCTACACCTGCTCTGGTCTTTCTTATGTATGCCATGCACCACCACAAAAAACACCAGGACTTTCAACAAGGATCTGTATCCAGTTTGTTGGTGGCAAAGCAGCAGCGTCATCTTAAACTTCTTTACATGGTCAACGTCGGCTTCCGTCTTCTTTCTGAGATCGGCTTTTTAGTTGGCCAGTGGCTGCTGTACGGCTTTCGCGTGGAGGCGCAGTTTCCCTGCAGTCGCTTTCCTTGTCCATACACTGTAGACTGCTTCACCTCCAGACCTATGGAGAAGACAGTCTTCCTGGTCTTCTACTTCGCTGTGGGAGTTCTCTCAGCTGTTTCCAGCCTGGTCGAGATCATTCACGTCACCCGAAAGTGGTTAATGGAAAATGGGGATGAGTTGGTACCTTGGAAGGATGTGGAACAGAGGGCAGAGCCTGATGAAGGGAATCTGAAGCAAAATGTACAGAACCTTGCACTGGGAAGTGGTACAGGGTCAAACAAATCCAGGCGGCCACCGCTGTTCACAGGAAAGGGTGGTAGAAGCAGCTGGAGATCACAAGGAACAGTAGGAAATACAAGGTACTCCAGTATCAAGAGCCTCAAAAGCACCAACAGCCAGAAAAGTGCCTCACTGGTGGTTTAAGGACCAGACATTTTGAACAATATTGCACACTATTGGAGTAAAAAGGCTACAGATATgagtaaatttaaaatttatatgtgtgtattacATACACACGTTGTTCAGGTCATATTTTGAGCCATATAGAAGAttaaaaaggtgaaaaataaacagtttgttGCACaagtaaattgtattatttattttattgcacagCCGAAGACTGATACCTGCAGACTTATGATACAAAGTTCTTAAATCCAACGCACAAACCAAGCTAGAATTAGGTCTACTGGAACTCt

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07627 GJD3, GJC1; gap junction delta-3 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49132 lncRNA upstream 43926 15086356 ~ 15090376 (+) True G36512
TU49131 lncRNA upstream 50362 15081564 ~ 15083940 (+) True G36511
TU49130 lncRNA upstream 52957 15077784 ~ 15081345 (+) True G36510
TU49129 lncRNA upstream 52957 15079126 ~ 15081345 (+) False G36510
TU49121 lncRNA upstream 70189 15053042 ~ 15064113 (+) True G36503
XR_002649903.1 lncRNA downstream 14268 15150171 ~ 15152128 (+) True LOC111192405
TU49145 lncRNA downstream 41203 15177106 ~ 15181078 (+) True G36524
TU49153 lncRNA downstream 63919 15199822 ~ 15200073 (+) True G36532
TU49220 lncRNA downstream 240379 15376282 ~ 15379928 (+) True G36560
TU49243 lncRNA downstream 405211 15541114 ~ 15546201 (+) True G36582
XM_007255156.3 mRNA upstream 1049 15116824 ~ 15133253 (+) True top2a
XM_007255159.3 mRNA upstream 98348 15032389 ~ 15035954 (+) True LOC103032173
XM_007255160.3 mRNA upstream 143003 14967880 ~ 14991299 (+) False LOC103032486
XM_007255161.3 mRNA upstream 143003 14968126 ~ 14991299 (+) True LOC103032486
XM_007260032.3 mRNA upstream 299955 14823653 ~ 14834347 (+) False get4
XM_007255152.3 mRNA downstream 88549 15224452 ~ 15382711 (+) False LOC103030376
XM_015607336.2 mRNA downstream 183864 15319767 ~ 15383888 (+) True LOC103030376
XM_007255155.3 mRNA downstream 212729 15348632 ~ 15382711 (+) False LOC103030376
XM_022669172.1 mRNA downstream 257112 15393015 ~ 15406356 (+) True LOC103029630
XM_007255149.3 mRNA downstream 271582 15407485 ~ 15423095 (+) True LOC103029312
TU49039 other upstream 343469 14789380 ~ 14790833 (+) True G36439
TU48945 other upstream 670663 14463137 ~ 14463639 (+) True G36371
TU48468 other upstream 2431246 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 2568331 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 2763340 12366540 ~ 12370962 (+) True G35967
TU49230 other downstream 296928 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 1864479 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 1864479 17000382 ~ 17018884 (+) False sun1
TU49799 other downstream 1866537 17002440 ~ 17018884 (+) False sun1
TU49795 other downstream 2065594 17201497 ~ 17205033 (+) True phf5a

Expression Profile