RNA id: XM_015607862.2


Basic Information

Item Value
RNA id XM_015607862.2
length 2713
RNA type mRNA
GC content 0.41
exon number 10
gene id wdr45b
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1129955 ~ 1138168 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTTGATTATTATTCCTGGTGCGCTGTGGGAAAGGAGGGACCGCAGGAACGCCAGCGCAGATTTCCTGACTGAACACCAGCAGTAGCGGTACGGAGCCCTGCCGAGCCCTGTAGCGAGTCTCTGGAAACCAGCGAGAGGAATGGTGTCTTTCGGTTAAAAGCAACCGGGTGTTTCTGACCTTCGGCTGGTTAAATAACTTAGACACACACCATGAATTTACTGCCGTCCAACCCGCACGGAAACGGGCTACTTTACGCTGGATTTAACCAGGATCACGgaTGCTTTGCGTGTGGAATGGAAAACGGATTCAGAGTGTACAACACAGATCCtcttaaagaaaaagaaaagcaagAGTTTCTGGAAGGTGGGGTTGGGCATGTGGAGATGCTCTTTCGATGCAACTACCTTGCACTTGTTGGCGGAGGCAAGAAGCCCAAATACCCACCTAATAAAGTTGGAACATCATGCATCTTCCATGTTTTGCAAGTCATGATTTGGGATGACCTCAAGAAAAAGACTGTGATTGAGATTGAATTTTCTACAGAAGTCAAAGCTGTAAAGCTACGACGAGACAGaATTGTGGTGGTCCTGGACTCCATGATCAAAGTATTTACTTTCACGCATAATCCTCACCAGCTGCATGTATTTGAAACATGCTACAACCCCAAAGGTCTTTGTGTGCTGTGTCCGAATAGCAACAACTCCCTTCTTGCATTTCCTGGCACGCACTCTGGGCACGTGCAGATAGTAGACCTGGCCAACACAGAGAGACCTCCGGTTGACATTCCAGCCCATGAGGGAGCTCTTTGCTGCATTGCTCTAAATCTCCAGGGGACAAGAATAGCCACAGCTTCAGAAAAAGGAACTCTGATCAGAATATTCGACACCTCAGCAGGTCATCTGATACAGGAGTTAAGACGAGGGTCACAAACTGCAAACATATATTGCATCAATTTCAACCAGGATGCATCTCTCATCTGTGTGTCAAGTGACCATGGTACTGTCCACATATTTGCTGCAGAAGATCCAAAAAGGAACAAGCAGTCAAGcttGGCATCAGCCAGTTTTCTCCCCAAATATTTCAGCTCCAAATGGAGCTTCTCTAAGTTCCAGGTCCCGTCTGGCTCGCCCTGCGTCTGTGCCTTTGGAACTGAGCCCAATGCAGTCATAGCCATTTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAACCAAAAAGGGGAGTGTTCAAGGGATGTATACGCCCAGTTTTTGGAAATGACTGATGAGAAGATATAAGCACAGATTCTACTTGGATTTACGTCCTTTACACTGCTGACATCTTCACGTTTGCAGAATGTCAGTGGTCCCACTCTACGTGGCATTTGTGACTCCATGTCACTTAAGGGAGATGAACCATATCAGAGACTCCCTGGTGAGAAATGAAAAGGAAAGACTGAGATCTGTttctgttctttgttttttttgtactctAAATAACACAAAAAGACTCTGGCCAAGCAGAGAGTTGGACAGACAAACTGACTGCAGGCGACTCATCTAGTGAAGTGAGAAGAGGGaaactttattttttgaatGGACAACagttgctttttaaaaggtcttCCATAGGTcttttgttcgttttttttttttttttttttcctttttttttatgtagagtTGGCTAGTTGGATCTTTGTCTACTAACACCACCTAACCTAACGTAGGGAGTGCCTCTGTCATTAATGAAGAGGAGTGATGAGTGTCCATGTATTCATCATTCACAACTAATATGTATGTACAAAAAATGAGTAGCGTTAGATTTTACTactataaacacaaaatgccaGACAGAACGTATGTAACTACATAGACTCAACATGTATAGACTAGTGCAAGGGAAAAAAGACAACTAAGATGTAGAtgtgtttttccattttaagTTACTTACATGtatgtgcaatatttttttttcattcagttgTTGGGAGTTAATCTGTTTAATTGAAGCAAATTAGTATTTGATAAATGCATTGTAATATGTGCATAGCTATTGTGTGCTCAGTACAGTCACGATATTCTTATGTTATTGGGGGAGTGGAGCACTTCATTAAAACAGAATTTGATGTAAAATGCTGTTAGGAGGGTCCCCAGTTGTAACATGACTACACAGAGTTCCATGTTAATTTGGTTATACAGACTCATGCATGCAACATTCCctttatttaagatttaatgTCAGGACTTTTGAAAGGCCAATACCACTTGCACAGTGGATCtatttttacagaaatgtaAGGAATATTACCTTATTTCCATAAAAGAATGAATATGTTGTGTGATATTAGTGGTAGCAAATTCATTACATGAAGGCAATCTtacaaatgtttgtaaaagaaAGTTCTTCAGCAGAAACAATACCAAAGTGCCCAATTATAACCCAATTCTATTTATGCTTGAACTGTATTCATCGTTCTTAATCGTTTCTCTGTATtatgtcatttattttcttttttttttcaagctgtTATGTTGATTATGTTGAAGTTGTTTCATGCTTTTGTCGTGATTGTAAAACGTAGACGTGATTACATATAATGCAATGTTTCCGTATAATGATGTAATATTGATGTACGCTAGGACTGTGAGCTCTGCAGGGATACAGCACACAATTTACCATGTGACAAATTAAACCCAATTGTGAAATCACAATCACAATGTGTTAatgaa

Function

GO: NA

KEGG:

id description
K22991 WDR45, WIPI4, WIPI3; WD repeat-containing protein 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649835.1 lncRNA upstream 83452 1042576 ~ 1046503 (+) True LOC111192341
TU45056 lncRNA upstream 83953 1039042 ~ 1046002 (+) False LOC111192341
TU45046 lncRNA upstream 137437 992317 ~ 992518 (+) True trnal-aag
TU45037 lncRNA upstream 138861 988920 ~ 991094 (+) False G33454
TU45036 lncRNA upstream 140279 988920 ~ 989676 (+) True G33454
TU45100 lncRNA downstream 46897 1185065 ~ 1221130 (+) True LOC111192399
XR_002649899.1 lncRNA downstream 46914 1185082 ~ 1220976 (+) False LOC111192399
TU45114 lncRNA downstream 205242 1343410 ~ 1344921 (+) True G33511
XR_002649836.1 lncRNA downstream 231005 1369173 ~ 1384218 (+) False LOC111192342
TU45182 lncRNA downstream 231034 1369202 ~ 1383801 (+) False LOC111192342
XM_007257192.3 mRNA upstream 9325 1114588 ~ 1120630 (+) True LOC103037439
XM_007234085.3 mRNA upstream 144574 983167 ~ 985381 (+) True LOC103023950
XM_007234094.3 mRNA upstream 156473 970636 ~ 973482 (+) True LOC103026642
XM_007234080.3 mRNA upstream 279693 838305 ~ 850262 (+) True LOC103022594
XM_007234073.2 mRNA upstream 374959 752588 ~ 754996 (+) True LOC103047415
XM_007257196.3 mRNA downstream 271 1138439 ~ 1156171 (+) True foxk2
XM_007257195.3 mRNA downstream 324 1138492 ~ 1156171 (+) False foxk2
XM_015607858.2 mRNA downstream 122482 1260650 ~ 1366518 (+) False LOC103039538
XM_015607861.2 mRNA downstream 122483 1260651 ~ 1366518 (+) True LOC103039538
XM_015607855.2 mRNA downstream 122483 1260651 ~ 1366518 (+) False LOC103039538
trnam-cau_18 other upstream 8083 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 8487 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 137562 992312 ~ 992393 (+) False trnal-aag
TU45029 other upstream 144583 983191 ~ 985372 (+) False LOC103023950
trnac-gca_9 other upstream 248517 881367 ~ 881438 (+) True trnac-gca_9
TU45181 other downstream 231034 1369202 ~ 1388019 (+) True LOC111192342
trnaq-cug_1 other downstream 699337 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45414 other downstream 912630 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 3032883 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 5481502 6619670 ~ 6663587 (+) False LOC103029551

Expression Profile