RNA id: XM_007257212.3


Basic Information

Item Value
RNA id XM_007257212.3
length 4362
RNA type mRNA
GC content 0.40
exon number 13
gene id LOC103042940
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1729023 ~ 1741475 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGAAATCCCGTGCCCCAGCTCGCTGCCCCGCACTCTCCCAGCAGTCAGTCGGGACTCCGAGCAGGACTTCTAATGGAGCCGTGCTGTTAACCATCCTGCTCCTCCTTCCTTCGAGCAGGCGATGCGCTGATCCCGCGGCTGCAGCGACTGTGGACTCGCCCGTGTTCGCGTAGCGCAGGGCGGGCGCTGATTGGTTTTGTTGCCGCTCTGCGAGCTCTGCTTCTCCCGCACCGCCCAGACCGAGCCTCCGCCATGGCGACTCCGACTCCCAGCACCAATTCACCAACTTCTTGCAGCGGCATTAACGCGGGCGGTGCGCTGCTCCCGCACCACCAAATGCAGAGCCAGCACATCACGACGATGAGCGGCTTACAGGAGTCCAACTCATGCTGGAGGTGTCAAAATGAAACAGGGTTTCAGATAAATCTGTCTGGTGTGCCCCAAAgtAAACGCAAAGCACTGAAGCTAAACTTTGCTAATCCTCCGATTAAACCAAATACAAGACTTCCCATTGCTTCGAGCACTCCTTCCTTCCAGAACCCACACATAGAGAGACTGCGCACCCACAGTATCGAATCATCTGGGAAGCTGAAGATCTCTCCTGAGCAGCACTGGGACTTCACTGCAGAAGACCTGAAGGACCTGGGGGAGATTGGTCGAGGAGCCTATGGCTCTGTCAACAAAATGGTTCACAAGCCTAGTGGTCAGATCATGGCTGTCAAGAGGATTCGGTCCACTGTTGATGAGAAGGAGCAGAAGCAGTTGCTGATGGACCTGGATGTAGTTATGAGGAGTAGTGACTGTCCCTACATTGTCCAGTTCTATGGGGCTCTGTTCCGAGAGggtgACTGTTGGATATGTATGGAACTTATGTCTACCTCGTTTGACAAATTCTACAAATATGTATATTGCTCGTTAGATGATGTCATTCCAGAGGAAATATTAGGCAAAATTACATTAGCGacTGTGAAAGCACTGAATCACTTGaaagaaaacttgaaaataatccACAGAGACATCAAACCCTCCAACATTCTCCTGGATAGAAATGGCAACATAAAGCTGTGTGACTTTGGCATCAGTGGACAGCTGGTTGACTCCATAGCCAAGACTAGAGATGCTGGATGTAGACCCTACATGGCTCCTGAAAGGATAGATCCCAGTGCTTCTAGACAAGGCTATGATGTGCGTTCTGACGTGTGGAGTTTGGGAATCACGCTGTACGAGCTGGCCACGGGCCGTTTCCCGTACCCGAAGTGGAACAGTGTGTTTGATCAGCTCACACAGGTGGTGAAGGGAGACCCTCCTCAACTAATCAATTCAGAGGAGAGACAGTTCTCTCCCAAGTTCATCAACTTTGTCAATCTATGCCTTACAAAGGATGAGTCAAAAAGGCCAAAGTACAAGGAGCTTCTGAAGCACCCCTTCATTCAGATGTATGAAGAGCGAGTGGTGGATGTTGCCAGTTATGTGTGTAAAATTCTGGATGAAATCCCCGCTTCCCCAAGCTCTCCTATGTACATCGACTGAGCGCCTGTATGGTATCTGTATGCAATGCAGTGTAACATGGCAACCATTTGGTGCATTGTTTCTTGATCATggttacacactgcttttaagaCATGACACTCAAAAATCCCAAAACATTTTGTGCAATAAGGACGGGCTTTCATCTTCAAGCCGTTAGTGTGTATCGGTCGACTAAAAACAAGCCAACTCCGTTCAGACTAGAACATGGTGGTTATTTTATCTGAtgtatcatatttattttaatgccaTATGTAAACTTTAGCTGAGCTTGTTTTAGAATTAAGGACACAAAACTTGAACATTTTCATTCAAGAcacaattaattaatcaaagcAGAGCTTCTCTTCGTGTTCACGGGgtataaatgagtgtgtgtgggtaggTGTAATATAACATGCAAAACATACCAAAACAATAAGTTAGCGTTTTTTGAGCATCAATATAACGAACAGCTATcttatgcaaaagtttgggcactgtTCAGATTAATTTTGTTGATTTTCCACacaagaaacaaacagaaatggcATTCCTCTGCACGTTTTCGATATTTCCACAATGCCTCTTTCCTGTTATCTTTCTGAATTGAACATATAAAAAAGGAGATGTTTAATGTGACATTACATTTGCACAGTGCATTTTGATAGATAATTTGCTTAATGTATCAACCACACAAAAAAGTTACACTTAGAAAATCGACACAGGTAATTTGACTGGTGTTCCAAACTTTTGAGATATATAAACATGCATGCTGAAGTTTGGAAAACCCAAACTTGTGGTCAAAATGTGTTACTGTGAATAGAAGCTAAGCAAGTAggtaaaagtaactttttttcacTCATTCTTCCTGGTAAAAAGAAGAGTTTGGTGAGACTCGGCTCGTCTTCCATGCATTACTCTCCTGAAGTTTGTCTACAGAGTATTGATGATGATCAGGTTAGGACACTGTGAGGACTATGATGGTTATATTTGTGCAGGTGCGCCGTAGAATAGTGCCCCACCCCTCCAGAGTCCACTGAATCCTTAGGCTTCTTTTCCCACAACAAAGTTGTGCAAAATAATAAAGATTAATTGCTGATCTTaccaaacattgtttttacatttcttttataattatttcacatagcaaattatttacattaatctGTATTAGGTGCTGTTTAATGCAAATAGACCACTGCGTGATATATCATGTCGGAACACACTttcacatgctctgtgcaattacacattgtCACCAGAGAGGTCTTCAGATCTCTATATTGCAAAACGTGTTGCTTTTAACTTTACCGCTTAACTATTCACAGTAACAGACATTTTGACCTGCAATGCTAAAAGTAATCATTTCTGTAATGTGGTGGTCATTTACGTCAATACTTGTacagataaataaaacacattagtTGTGATCTCACATTGtgatgaaatgaatgaatatgcAGAAGTATTGTTTAGCATAAAAGAATTTGTTAAAAGGATGGTTGGAAACTTAACTCTAGACCTTTTGCTCCACATAATTGGATATCTGTTGATTGTTTAGGGTGTTTGGGAGTTTACCAGTTTTGTAGAATTCCAACATTTCAGCCATATGATTTCTGCCATATGCAGGTGCCATTGATGTGGGAATGGAAAGGAGAGGATGATTGATTGTCTGTTGGAATTGATCTGTTAGACTCCATCTCAATCACTAGATTTCCAGGAAAGTGAACCATGTTgtctagataaaaaaaatcaagctatccttttaaagtagctttattttataaatatgcaaTTTTAACTCACCAAATTGTATTCACTGCATTTAAGGAAAAAGTCCTTCTGGTGTAGTGAACACTTAAATAGAGCCTGCAGGACACTTCTACACAAttgtaaatgtgtataaaactTACTATATAACTTTAGAAAATTACAGATTCCTCTGCAAAAAtcctttgttttgttgttttcagAAGTAGCTTTGTATTTGCTGCTTCATAGAGTCTGCCTCTTTTGCTGAAATTGGCATGTTCTCAGCAGTCACAGCATGGCATGTTGACTGTATGGAATGTCAGTGATCAGTGTCCAGAAGTCACGGTTTGGGTTACTAGCTTTGAAAGAGAAACATGGAACTTTGCCAAAGCAGCCTTTCAGCAACTGATTTGACAAAATTATAACATGATGCTGCCAGATTTGAATGACaataccgttttttttttttattattgtatttttttggtacctaaatagaaaaatgtaaaaagatattATCTAGTATCTGTAAGACCTAGTTATGGTTAAACTCTAAATACTTTGTGTGTGGGTaccataataaatacatttccccAATATTAAAAGCAACTTTTCAAAAGGTAAATAGTGTACGTTACAAATGAgtagaatatttaatatttagaagGGAAAATATGATATGGGTGATATGTATCATTACATTGTATCACTATTAAGAGTgggaaaatatgtttaaaaaaaaagatgttcacactgtgaaaatattttaagtgtatGTTGTGAACTCAAAAGAAAATctgtacaaaaaatgtaaaaaaaaaaaaatgtaataagaaGATCTGCAGGGATATTGCCTTATGTCTGTTTTTGGAGAGATTAACCTCTGACGCGTCTGGGCTGTTTGTCTTATTCACTTCacgtatttaaataatattcatgAAATCTTAGTGTTCACATAGTAATGATAAGAGCTAAATATCTGCCTGCAGGTCAGTTGTGATAAGGCTAAGATGTGACTGTGACcttgtcctgtttttttctgtaagatCTGAAAACACAAATGGGCTCAATGCTAGAATAAATCCAATCAATTAGCTTA

Function

GO: NA

KEGG:

id description
K04430 MAP2K4, MKK4; mitogen-activated protein kinase kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649840.1 lncRNA downstream 1766 1720811 ~ 1727257 (-) True LOC111192345
XR_002649839.1 lncRNA downstream 8577 1718648 ~ 1720446 (-) True LOC111192344
TU45161 lncRNA downstream 554368 1174440 ~ 1174655 (-) True G33545
TU45154 lncRNA downstream 572846 1153432 ~ 1156177 (-) True G33539
TU45016 lncRNA downstream 807377 912388 ~ 921646 (-) True G33441
TU45350 lncRNA upstream 115510 1856968 ~ 1857715 (-) True G33690
TU45353 lncRNA upstream 121328 1862786 ~ 1863512 (-) True G33693
TU45402 lncRNA upstream 234371 1975829 ~ 1976108 (-) True G33731
TU45403 lncRNA upstream 234871 1976329 ~ 1976585 (-) True G33732
TU45446 lncRNA upstream 332877 2074335 ~ 2074606 (-) True G33759
XM_022668867.1 mRNA downstream 181271 1378988 ~ 1547752 (-) True dnah9
XM_007257197.3 mRNA downstream 556350 1167227 ~ 1172673 (-) True LOC103038911
XM_007257193.3 mRNA downstream 603759 1123216 ~ 1125264 (-) True mrpl58
XM_015607840.2 mRNA downstream 603764 1123216 ~ 1125259 (-) False mrpl58
XM_022669428.1 mRNA downstream 616340 1070117 ~ 1112683 (-) True LOC103032113
XM_022668878.1 mRNA upstream 3758 1745216 ~ 1753543 (-) False LOC103044468
XM_015607839.2 mRNA upstream 3758 1745216 ~ 1748043 (-) False LOC103044468
XM_007257217.2 mRNA upstream 3758 1745216 ~ 1748041 (-) True LOC103044468
XM_007257214.3 mRNA upstream 7746 1749204 ~ 1753514 (-) True LOC103043761
XM_022668883.1 mRNA upstream 84031 1825489 ~ 1837284 (-) True LOC103040308
trnar-ccu other downstream 602556 1126395 ~ 1126467 (-) True trnar-ccu
trnaq-cug other downstream 603487 1125465 ~ 1125536 (-) True trnaq-cug
TU44781 other downstream 1327711 389469 ~ 401312 (-) True LOC111192416
TU45334 other upstream 69128 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 281283 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 293636 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other upstream 294667 2036125 ~ 2042274 (-) False LOC103022010
TU45542 other upstream 427565 2169023 ~ 2177059 (-) True G33823

Expression Profile