RNA id: XM_007257214.3


Basic Information

Item Value
RNA id XM_007257214.3
length 2911
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC103043761
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1749204 ~ 1753514 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAGTTAGTACCGCTCCCGCGCTGATGGAGGACGGAGGTCCGCCGCCGCTCTTTTCGTTCGGAGTGATCGCGGACATTCAGTTCGCGGATAAAGACGACGGCTTCAACTTTCATCGCACGAGGAAACGCTTCTACCGGAACAGCCTGCAGATCCTGAAGAACGCGAGCAGGTGctgggaggaggaagaggagccgGAGCGGAGGCCCGCCTTCATCCTGCAGCTCGGAGACATCATCGACGGCTTTAACCGAGAACTCTCCGCGTCCGAGAGAGCGCTGCAGACCGTGCTGGACGAGTTCAGCAGCTGCTCCGCCAAAGTTCATCATGTGTGGGGAAACCACGAGTTCTACAACTTCAGCAGAGCAGCGCTGTTCCAGTCCGCCCTCAACAGCcgagacagaggagagagaggagcggaagatgaaggaggagaagaagaaggaggaggaggaagaggagaggaggaggagaaggagaacaGTCTGGAAGAAGTGTACGCTTATCACTTCAGCCCCCATCCCAAATTTCGCTTCATTGTGCTGGATGCCTACGACCTGAGTATTATAGGCAGAGACAAGTCCAGCAAGAAGTTCAAGCAGTCCATGAAGATCATCACAGAGCACAACCACAACGAGGAGCTCAACGAACCTCCAGccatttctccacTGGAATCGAGGTTCGTGAAGTACAATGGAGGATTTAGTCAAGACCAGCTAGACTGGTTGGAGAGAGTGTTGACGAGTGCAGATGAAAATGAGGAAAAGGTTACCATATTGAGTCACCTTCCTGTTCACCCCTATTCTACTGACCCTGTTTGCCTTGCATGGAATTATGACAAGATACTTTCTATGCTGCAGGCTCATAATAGTGTGGTGTGTTTCATGGCTGGACATGATCATGATGGGGGATACCACATGGACACGTACGGGGTTCATCACCTCACCCTGGAGGGGGTTATAGAGACACCTCCCATCAGTGATGCTTTTGGGATTGTCTATGTGTATGAAGACAGAATGGTTCTCCAAGGCAGAGGAAGAATATCTGACAGGGTGTTGATGTTTCGATAAAGCACATGTTGGCctttttatatacagttgtggttgATTTACATACGTTCATCATGGACATATATGTcatgcatttaaaaagaaaaaaaaatcgccATGAATGAGTGAACAACTTACATATATAATTGgaaaaaaaggtcaaaaatacacatacatCTGATCTAATACTTGATTAATGCCACCACAAAATTAAAGAGACATTCTGTATGAAAAGAGACTTTAAtgataccaccaccatgcttggcAGTTGGAAAAGTGGTTAACATTTGTCTTATATgaccatacattttttttttttttatttatgttttctttttttaagtaggGGATTCTTTAGTCGCCAGCTGCCTTTTAGTTAATGGTGACGTGAAGCTCACTCACTGCTTCAGCAGTTTTTAGTTTATGGCAGTTCTGTGCCTTTTTGGTTTGTGGGTTGTTTCAGATCATTTCCTCTGCTCTGAGGGTTACAGTTTGGGTCTACACCTGGCTACACCTCCCAGTCACTTGAATTTTTAGACAGCTGATTGAACtagtatttttaaaacaactCCAAAAGACATTTCTGTAAATGACCTGCATTCCTCCTTGAGAGCTGAGTAGGAAGGCAAAGCTCTCTGTTTACTGGTCAATCTACGTTACAACTCTCACCTATGGCCACGAGCTTTAGGTAGTGACGAAGGGAATCAGATATTAATACAAGCTGCGGAAATTAGTTTCCTCTGCAGGGTGTCCAGACTCTGCCTTAGAAATAGGGCTTGGAGAGGAGCCAGCCAAGGTGGTTTGGGCATCTGCTTAGGATGTCTCCTAAATGCCTTCCTGGTGAGGTGTTTCGGGCATGTCCAACAGGAAGGAGACCCAGGGAAAACCCAGGACTAGCTGGAGGTCTTATATCTCTCGGCTGGCCTGGGAACACTTTGGTGTCCCCCCAGAAGAACTGAAAAAGGTAGATGGGAAGAGGGAGGTCCGGGTCTCTTTGCTTAGATGGCTGCCCTTGTGACCCTGATCTCCAGATAAGCagcagatgatgatgatgatttgcATAAACTTGTCTATGACCATCCTTCTCAGAACTGAATTCAACTACTTGAACTTCCTCAATAAGTTCATACAGCAAGTGCTGTCATACAAACACTTGCACACAAGGAAACTAGCAGCTGTAGTCAGCCATGATCACTGACAAGAAGAAGGGGGAGATAACTCTTGAGAAGTTTTGGGCTCCTGTCCAGGTCTCTTTTGAAGaaagcaacccccccccccccccccccccccttctgaTGTCAATAAGGTGAGATAGGAGTTGATGTAGGGCACACAATCTAAGTAGATGGTATTTATAAGATGCTATTTCAGAGGATGGGCTTCATGTATGTCCCCCTCCCAAGCGTTAaaacatttgagaaaaaaacagtttgacaAAGTTGCTATGACATTCATGTCCATGATGGCTGCATATACACTTATACTACACTATTtgaccagagctgtatattagtaaCATTAAAGGTGTATAAGGTGTTTGACTGTTTAAAGTATACAGtcagtatatgtatgtatttaatatatttctatgctgtcctaaatatattttaatatatcaaACAACtagatatttaataaaaatgacacAAAGTGTTATAGTAAGTGCAAAATATGGTGGTCTGCTGCTGTCACATATATTCACCAggtttataatgtatattatataatgtgcagggaaatatgttttacaaattatatttgtatatttatatatgggTGAATGGGTAAATACATTTGAGCATGTGCAGTTACACTGTGGTATGTGTGAACTTGTTTAATCTTGTATACAATTCTAATGAAACA

Function

GO: NA

KEGG:

id description
K01517 ADPRM; manganese-dependent ADP-ribose/CDP-alcohol diphosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649840.1 lncRNA downstream 21947 1720811 ~ 1727257 (-) True LOC111192345
XR_002649839.1 lncRNA downstream 28758 1718648 ~ 1720446 (-) True LOC111192344
TU45161 lncRNA downstream 574549 1174440 ~ 1174655 (-) True G33545
TU45154 lncRNA downstream 593027 1153432 ~ 1156177 (-) True G33539
TU45016 lncRNA downstream 827558 912388 ~ 921646 (-) True G33441
TU45350 lncRNA upstream 103454 1856968 ~ 1857715 (-) True G33690
TU45353 lncRNA upstream 109272 1862786 ~ 1863512 (-) True G33693
TU45402 lncRNA upstream 222315 1975829 ~ 1976108 (-) True G33731
TU45403 lncRNA upstream 222815 1976329 ~ 1976585 (-) True G33732
TU45446 lncRNA upstream 320821 2074335 ~ 2074606 (-) True G33759
XM_015607839.2 mRNA downstream 1161 1745216 ~ 1748043 (-) False LOC103044468
XM_007257217.2 mRNA downstream 1163 1745216 ~ 1748041 (-) True LOC103044468
XM_007257213.3 mRNA downstream 7729 1729023 ~ 1741475 (-) False LOC103042940
XM_007257212.3 mRNA downstream 7746 1729023 ~ 1741458 (-) True LOC103042940
XM_022668867.1 mRNA downstream 201452 1378988 ~ 1547752 (-) True dnah9
XM_022668883.1 mRNA upstream 71975 1825489 ~ 1837284 (-) True LOC103040308
XM_022668882.1 mRNA upstream 71975 1825489 ~ 1836476 (-) False LOC103040308
XM_007259081.3 mRNA upstream 117096 1870610 ~ 1878209 (-) False cbx7
XM_007259080.3 mRNA upstream 117096 1870610 ~ 1878208 (-) True cbx7
XM_022668889.1 mRNA upstream 125744 1879258 ~ 1889279 (-) True josd1
trnar-ccu other downstream 622737 1126395 ~ 1126467 (-) True trnar-ccu
trnaq-cug other downstream 623668 1125465 ~ 1125536 (-) True trnaq-cug
TU44781 other downstream 1347892 389469 ~ 401312 (-) True LOC111192416
TU45334 other upstream 57072 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 269227 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 281580 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other upstream 282611 2036125 ~ 2042274 (-) False LOC103022010
TU45542 other upstream 415509 2169023 ~ 2177059 (-) True G33823

Expression Profile