RNA id: XM_007259075.3


Basic Information

Item Value
RNA id XM_007259075.3
length 2489
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC103043879
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1807011 ~ 1814314 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCATGTTGTGAGTCGGAGCGCTCAGGGAGTAGTGCTGAACGTTGAGTTACTCGGTTTGCCGTTTGAGTTGGGAAAAACGTGACCATCTCAACATACAATTAATATCTGATTGGCAGTTCTGTTAAAGGGAAATCGAATGGCTTCTGAAGATATTGCCCAGCTTACAGAGGCGCTGGCCAAAACTCATGTTGGAGAAGAGCTAAGCTACAAAGGTCAGGGGCTAAAGCTGGATGATGAGCAATCAGTGGAAAAGATAGTCAGAGAGATTGACCAGTTCAGGGGTCTAAGGGCATTGAGACTGGAAGGAAATACTATTGGGGTTGAAGCAGCACATGCCATAGCAAAAGCTCTTGAGACCCACAATGAACTTGAGtGCTGTCACTGGAGTGACATGTTTACGGGTCGCCTTCGTTCTGAAATCCCTCCTGCCTTGAAATCTCTGGGAAGTGCATTAATAACCTCAGGTGCCAGGCTTACTGAGCTGGACTTGAGTGACAATGCTTTTGGTCCAGATGGTGTAAAGGGCATTGAAACCCTCCTGAAGAGCCCTGTGTGCCATACACTAAAAGAACTCAGGCTCAACAACTGTGGCATGGGCATTGGAGGGGGAATTATCCTGGCTTCTGCATTGACTGAGTGCTATAAACAGTCAAGTGCTATGGGCTCACCACTGAAGCTGAAGGTTTTCATAGCTGGACGTAATCGCCTGGAAAACGATGGCGCCACTGCTCTAGCCCGTGCATTTCAGATGATTGGTAGTCTTGAGGAGGTCCACATGCCACAGAATGGGATCAATCATCCTGGCATCACAGCTTTGGCCACCGCAATGCAACACAATCCCAATCTTCGTGTTCTAAACCTCAATGACAATACTTTCACCAAGAGAGGAGCGGTTGCCATGGCTCAGGCCCTTAAGCACCTACGCAGCATTCAGGTTGTTAATTTTGGTGACTGTCTGGTACGTACTGAAGGCGCCATTGCTATAGCGGCAGCCCTAAGAGAAGGATTGACTGTTATTAAGGAGCTAAATCTGTCTTTTGGGGAAATTACTGAAGCTGCAGCGTTGGTACTTGCAAGGGCATTAAAGGACAAACCTGATTTGAAGAAGTTAGACCTCAATGGAAACTGCCTGGGGGAGTATGGCTGTGAAGCTCTCAAAGAGGCTATGGAAAGTGTGGACAAGTCAGATGTGCTTGGTTCACTCAGTGATGATGAAGGAGAACcagatgaagaagaggaggaggatgatgaagatAGTGGTGCagaggatgaggatgatgaggaggaggaggaggaggaagagcacAACTGTGTTAATGGGACTAAGGAAAATGGAAAAGATAAGGGAAGCCCAGCAAAGACAAACCTCTGCAGTCCCGACCTCATATCCTTCTTTCATTCACCAACATCAGAGAAATTGTTCAACCTTGGAGCCAAGAGAACTCAGCTTATTGAGCAGCAGCTTGATTTTTCAGATGCTGCCAAAATTGCAGATTTTTTCCTTCAGATCTGTTCAGTGTATGAAGAAGAGGTGGAGGTGAAGCAAGTCGTTTTAGAAACTGCTGATACTCTGTTGAGGAAAGGCTTTTCCAGTCCTCACTTTCAGACTTACCTTTTTATCTCCTCACTGATGGTGAACATGGGGCTTTTAAAGggTGAAAAGAAAACGAAGAAGATGGGTGTTTTGCCTGGTCACCTCATTGTTTTGAATCACTGTGTTGGACAGGACTACTTTCCTGTGGACCAGGCTGATGTTCTGCTGATCTTTTTGTCCCGAAATGGCAAAGTCCTGGAGTCTTGTTCCAAGGCAAGAGATTACCTTAAAACCACACTGGAGAAGAAGATTGCTGCTTAATACTCTGTGCTGTCACTGGAAACACCAAATATGGGTCAAAGACATCGGCCAGATCCTGAAATGCTTAATTGGAAAGGATATTTCAATCTATAATTGTCAGTGGTTAACTTACCATTCAGTTAACTCTTACTGGGATTTTTTTGGAGAGCTGTAATGAAAAGGACCTTAAGTTCTGACATGTATATTAGTGCCTCTTAAGTACCAGACAGattgaaggtaaaaaaaatagcctGGGAATAGTCTTTTGTACTTTACAACTCTTTCATACATACTTTCAGTATGGCATAAAAGCTATTTTCTTTACCTCTTCTTAAGTCTGATTCATATGGCTACAACCCTTGAAACTATAACATatcaaaattaagtaaattgaaAGAATTGTTCTGCTATATTATCAGTAATAGTTGAATGACACAACAAAACTGCCTTTAAAGCTTTATTTGGGAAAGCTTCAGTTTGCCCATGCACACAAGTAGataatttttttagtgtttttttcatagttgaACTGTTCAGGGAACAGCTGGTAAAAGGGAACATGATAAAATGTAGTATGTGCTCTCAACTGTACAGTTGTGTTCAGTGCATTCCattgtatttgaaataaagtgattatttttgtgaaaggagA

Function

GO:      GO:0005098,GO:0032853

KEGG:

id description
K14319 RANGAP1; Ran GTPase-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45246 lncRNA upstream 71053 1732926 ~ 1735977 (+) True G33611
TU45245 lncRNA upstream 71053 1735040 ~ 1735977 (+) False G33611
TU45243 lncRNA upstream 75072 1728121 ~ 1731958 (+) True G33609
XR_002649837.1 lncRNA upstream 249740 1547675 ~ 1557290 (+) False LOC111192343
TU45265 lncRNA downstream 54616 1868930 ~ 1871903 (+) True G33623
TU45408 lncRNA downstream 214019 2028333 ~ 2030101 (+) True G33737
TU45430 lncRNA downstream 271329 2085643 ~ 2087531 (+) True G33747
TU45432 lncRNA downstream 273645 2087959 ~ 2088160 (+) True G33748
TU45440 lncRNA downstream 303253 2117567 ~ 2119530 (+) True G33754
XM_022668880.1 mRNA upstream 7357 1784438 ~ 1799673 (+) True LOC111192346
XM_022668879.1 mRNA upstream 24278 1759608 ~ 1782752 (+) True LOC103043447
XM_015607842.2 mRNA upstream 24278 1759609 ~ 1782752 (+) False LOC103043447
XM_007257207.3 mRNA upstream 85128 1688261 ~ 1721902 (+) False myocd
XM_022668885.1 mRNA downstream 1924 1816238 ~ 1825383 (+) False LOC103042228
XM_022668886.1 mRNA downstream 1927 1816241 ~ 1827981 (+) True LOC103042228
XM_022668884.1 mRNA downstream 1927 1816241 ~ 1825383 (+) False LOC103042228
XM_007259349.3 mRNA downstream 1927 1816241 ~ 1825383 (+) False LOC103042228
XM_015608365.2 mRNA downstream 31889 1846203 ~ 1868651 (+) False LOC103044365
TU45181 other upstream 419011 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 685158 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 685562 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 814637 992312 ~ 992393 (+) False trnal-aag
TU45029 other upstream 821658 983191 ~ 985372 (+) False LOC103023950
trnaq-cug_1 other downstream 23191 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45414 other downstream 236484 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2356737 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 4805356 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 4805357 6619671 ~ 6661251 (+) False LOC103029551

Expression Profile