RNA id: XM_022668881.1


Basic Information

Item Value
RNA id XM_022668881.1
length 2123
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC103043879
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1807011 ~ 1814314 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCATGTCTGCCTCCATGCGTCTCATGTTGCAGTTCTGTTAAAGGGAAATCGAATGGCTTCTGAAGATATTGCCCAGCTTACAGAGGCGCTGGCCAAAACTCATGTTGGAGAAGAGCTAAGCTACAAAGGTCAGGGGCTAAAGCTGGATGATGAGCAATCAGTGGAAAAGATAGTCAGAGAGATTGACCAGTTCAGGGGTCTAAGGGCATTGAGACTGGAAGGAAATACTATTGGGGTTGAAGCAGCACATGCCATAGCAAAAGCTCTTGAGACCCACAATGAACTTGAGtGCTGTCACTGGAGTGACATGTTTACGGGTCGCCTTCGTTCTGAAATCCCTCCTGCCTTGAAATCTCTGGGAAGTGCATTAATAACCTCAGGTGCCAGGCTTACTGAGCTGGACTTGAGTGACAATGCTTTTGGTCCAGATGGTGTAAAGGGCATTGAAACCCTCCTGAAGAGCCCTGTGTGCCATACACTAAAAGAACTCAGGCTCAACAACTGTGGCATGGGCATTGGAGGGGGAATTATCCTGGCTTCTGCATTGACTGAGTGCTATAAACAGTCAAGTGCTATGGGCTCACCACTGAAGCTGAAGGTTTTCATAGCTGGACGTAATCGCCTGGAAAACGATGGCGCCACTGCTCTAGCCCGTGCATTTCAGATGATTGGTAGTCTTGAGGAGGTCCACATGCCACAGAATGGGATCAATCATCCTGGCATCACAGCTTTGGCCACCGCAATGCAACACAATCCCAATCTTCGTGTTCTAAACCTCAATGACAATACTTTCACCAAGAGAGGAGCGGTTGCCATGGCTCAGGCCCTTAAGCACCTACGCAGCATTCAGGTTGTTAATTTTGGTGACTGTCTGGTACGTACTGAAGGCGCCATTGCTATAGCGGCAGCCCTAAGAGAAGGATTGACTGTTATTAAGGAGCTAAATCTGTCTTTTGGGGAAATTACTGAAGCTGCAGCGTTGGTACTTGCAAGGGCATTAAAGGACAAACCTGATTTGAAGAAGTTAGACCTCAATGGAAACTGCCTGGGGGAGTATGGCTGTGAAGCTCTCAAAGAGGCTATGGAAAGTGTGGACAAGTCAGATGTGCTTGGTTCACTCAGTGATGATGAAGGAGAACcagatgaagaagaggaggaggatgatgaagatAGTGGTGCagaggatgaggatgatgaggaggaggaggaggaggaagagcacAACTGTGTTAATGGGACTAAGGAAAATGGAAAAGATAAGGGAAGCCCAGCAAAGACAAACCTCTGCAGTCCCGACCTCATATCCTTCTTTCATTCACCAACATCAGAGAAATTGTTCAACCTTGGAGCCAAGAGAACTCAGCTTATTGAGCAGCAGCTTGATTTTTCAGATGCTGCCAAAATTGCAGATTTTTTCCTTCAGATCTGTTCAGTGTATGAAGAAGAGGTGGAGGTGAAGCAAGTCGTTTTAGAAACTGCTGATACTCTGTTGAGGAAAGGCTTTTCCAGTCCTCACTTTCAGACTTACCTTTTTATCTCCTCACTGATGGTGAACATGGGGCTTTTAAAGggTGAAAAGAAAACGAAGAAGATGGGTGTTTTGCCTGGTCACCTCATTGTTTTGAATCACTGTGTTGGACAGGACTACTTTCCTGTGGACCAGGCTGATGTTCTGCTGATCTTTTTGTCCCGAAATGGCAAAGTCCTGGAGTCTTGTTCCAAGGCAAGAGATTACCTTAAAACCACACTGGAGAAGAAGATTGCTGCTTAATACTCTGTGCTGTCACTGGAAACACCAAATATGGGTCAAAGACATCGGCCAGATCCTGAAATGCTTAATTGGAAAGGATATTTCAATCTATAATTGTCAGTGGTTAACTTACCATTCAGTTAACTCTTACTGGGATTTTTTTGGAGAGCTGTAATGAAAAGGACCTTAAGTTCTGACATGTATATTAGTGCCTCTTAAGTACCAGACAGattgaaggtaaaaaaaatagcctGGGAATAGTCTTTTGTACTTTACAACTCTTTCATACATACTTTCAGTATGGCATAAAAGCTATTTTCTTTACCTCTTCTTAAGTCTGATTCATATGGCTACAACCCTTGAAACTATAAC

Function

GO:      GO:0005098,GO:0032853

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45246 lncRNA upstream 71034 1732926 ~ 1735977 (+) True G33611
TU45245 lncRNA upstream 71034 1735040 ~ 1735977 (+) False G33611
TU45243 lncRNA upstream 75053 1728121 ~ 1731958 (+) True G33609
XR_002649837.1 lncRNA upstream 249721 1547675 ~ 1557290 (+) False LOC111192343
TU45265 lncRNA downstream 54896 1868930 ~ 1871903 (+) True G33623
TU45408 lncRNA downstream 214299 2028333 ~ 2030101 (+) True G33737
TU45430 lncRNA downstream 271609 2085643 ~ 2087531 (+) True G33747
TU45432 lncRNA downstream 273925 2087959 ~ 2088160 (+) True G33748
TU45440 lncRNA downstream 303533 2117567 ~ 2119530 (+) True G33754
XM_022668880.1 mRNA upstream 7338 1784438 ~ 1799673 (+) True LOC111192346
XM_022668879.1 mRNA upstream 24259 1759608 ~ 1782752 (+) True LOC103043447
XM_015607842.2 mRNA upstream 24259 1759609 ~ 1782752 (+) False LOC103043447
XM_007257205.3 mRNA upstream 85109 1688261 ~ 1721902 (+) False myocd
XM_022668885.1 mRNA downstream 2204 1816238 ~ 1825383 (+) False LOC103042228
XM_022668886.1 mRNA downstream 2207 1816241 ~ 1827981 (+) True LOC103042228
XM_022668884.1 mRNA downstream 2207 1816241 ~ 1825383 (+) False LOC103042228
XM_007259349.3 mRNA downstream 2207 1816241 ~ 1825383 (+) False LOC103042228
XM_015608365.2 mRNA downstream 32169 1846203 ~ 1868651 (+) False LOC103044365
TU45181 other upstream 418992 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 685139 1121801 ~ 1121872 (+) True trnam-cau_18
trnar-ucg other upstream 685543 1121396 ~ 1121468 (+) True trnar-ucg
trnal-aag other upstream 814618 992312 ~ 992393 (+) False trnal-aag
TU45029 other upstream 821639 983191 ~ 985372 (+) False LOC103023950
trnaq-cug_1 other downstream 23471 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45414 other downstream 236764 2050798 ~ 2056874 (+) True amz2
TU46176 other downstream 2357017 4171051 ~ 4178083 (+) False G34309
XR_002649861.1 other downstream 4805636 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 4805637 6619671 ~ 6661251 (+) False LOC103029551

Expression Profile