RNA id: XM_007259090.3


Basic Information

Item Value
RNA id XM_007259090.3
length 4869
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC103047336
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1977614 ~ 2017175 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCTCGCACTGCGGAGCTGGGCTGCTGGGTTAGCGGAGCGCGGTCTAACGCTAACCGTGTCGGCTCACGGTTTGTGAATAAATGTCGAGTTTTAAAACCCAACACGCTGCCACGTTTAGGTCCTCACAACTCGAAACATTACACATCATCAGCAAACTGAATATGGAAATAGGACGACCAGTCATACCCAAGATCTTATAAATAagGTCTGACTGTCATCACACACGCATCACGCTGGCAGCCCCCGAGGCCCAGGCTGGGGAGGAGCTGAGCCCAGGCAGCATGGTGTCTGCCCGGGCCTCGGGCTCGGCTCCCAGCCCTCAGAGCGAGGCCGTCGCCAGCGAGCTGGAAGAGCTCTCTCTGCAGTCCGTCCCCAGCCTGCTGCCCCTGAGCGAGAGGAAGAATGTCCTCCAGCTCAAACTACAACAGAGGAGGACACGAGAGGAGCTGGTCAGCCAAGGAATCATGCCACCGCTAAAGAGTCCTGCTGCTTTTCACGAGCAGAGAAGAAGTCTGGAGAGGGCACGGaCTGAAGACTATTTGAAGAGGAAGATCAGGAGTCGGCCAGAGAGGTCAGAGCTGGTGAGGATGCACATTCTGGAGGAGACATCAGCAGAGCCCTCTCTGCAGGCCAAGCAGCTGAAGCTGAAGAGGGCTCGTCTGGCTGATGACCTCAACGATAAGATCTCTCACCGGCCTGGCCCAATTGAGCTCATCCACAAGAACATCCTGCCTGTGCCCGCACTCATAGGTTCAGGATCTCCAAAAGGTGAGAATTCCTCTTTGGATGAAGACAGCAGTGATGCCCTGTCACCTGATCAACCAGGCAGTCAGGACTCCCCACTAGGCCACGCCCCTCAGCACTCCCCCTCTGATATGCTCAATCTGAACAGAAACCCCTCACCCACACAGTTCCTCACTCAGACTCCACCACCTCTGCTTGTCACACCTGACTCCTCCTCCCAAAACCTGACCAATGGAACTCTGATGGCTACAAGTGCCCGTCCTCCTCCAGGACCTGCCAAACCCCAGTCAAAGTCTAGTGCCGATCGGCCCTCTCAGAGGCCCAAGAAGCCCAAAGAGAGCAAGCCTAAAGTGAAGAAGCTCAAATATCACCAGTACATCCCCCCAGATCAGAAGAATGATCGCGAGCCCCCGCCCCAGCTGGACTCATCTTATGCCAAGATcctccatcagcagcagctctttctccagcttCAGATAAtcagccagcagcagcagcactacaaCTACCACACCATCCTACCTGCTCCACCCAAGCTTCCTACTGAGCAACAACAGCAGCCGCCACCAACCAATCCTGGCCCCTCTCCCTCACGCACAGTTTCTGCACCTTCCACTGCTCCATCCACTCAGAATGGGTCTAATCGTCAAAGTCAGCCACCGGCAGGAGGGGCCAAACCTGGGGTGCTGCCTGCAAACCTGGATGAATTCAAAGTTGCTGAGCTGAAGCAGGAGCTGAAGCTGAGGGGTTTGACAGTGTCTGGTACTAAGAACGACCTAATAGAGAGGCTGAAGAACTACCAGGAGCAAAATGGAGGTTCAGCAACTGCAGCAGCGAAAGCAGCAGCCCCAGCTACGCCTCAGCAGGCTTCAGCTCAGTCCTCTGTATCCGACTCTGCTGGACATCAATCCAAAGATGCCACTGGGAAAGTGTCAGCCTTTCCAGTAGCAGTGACTAATGGAGTCCATGCTGCAGCTCCGCCCCAAATCATGCGCTTCAGCAGCACAAGCTCCTCCCCTCCTGTGTCTCCTACGCCGTCCGACCGCTCGCTGGCTGGTATGAGCGCGGATGAGACCAGCTGTAATGGGGATGTGTTTGGAGAAATGGTGACCTCGCCTCTCACCCAGCTCACTCTGCACCCGTCCCCTGAACTTCCCTCCCCAGTTAAGGAGGAGCCTTTGGGGCTCCTGCAGTCTTCATGCTGTCTTTCCCGTCCCACCCCTCTCGCACCTCCGCTTCCTCAGCCTCAGGAGCTCCAGTTGTGCCCCCCGCCAGTACCTGTGGCACCTGCACTGGACAAAGACCAGATGCTGCAGGAGAAGGACAAGCAAATTGAAGAGCTGACTCGCATGCTGAGGCAGAAGCAAAGGCTGGTGGAGACTCTTCGCTTTCAGCTTGAGCAGGGCAAGCGTGGAGCACCCGCAGAGGGCCTGGACATCAGCGTCAAAATGGAACGGGCCCTCCTTGTCAAAGGGGAATTAGTAAGGGTGAAGGAGGAGGCAAAGGAGGACATGGAGACGTCAGAGGATCCGCAACCACAGATGCAGCCGCAGAAGAAGACACAGATGCAGTGTTCTCAACAGACGCTGCTCAAACTTCAGCAGATCCACCGGCTGCAGGTgcaacagcaacaacagcagcaacagcagcagcagcaacaactgcagcttcaacaacagcagcagcagttgcagcaacaactacaacaacaacagcagcagcagcaacagcaaatgCAAGTAGAGAAGCCAAAaccacaacagcagcagcagcggcaaaTGCAGGTAGACCAGCCAAAACcaccacaacaacaacagcagcagaaatCACAGCTACAGCAACAGAAGCTGCAACAGCTAATCATCCAGCAGAGCCACCAGAAGCAAAAGCTGCAAAAGCAGGCCAATCAGAGGAAGCAGCAAAGGCCACAAAAGCTGCAGCAACAAAAGGAGCAACCGTTACAGACACAACAGATCTCGCAAGTGTTTATTAACCAACAGACTGGTACCCAAGTAACCACGTCTTTCCCGCTGGACCTTCTGAAAGCTCACCCAGCACCCACCCTGGTCACAGATGGCAACGGCAACCACTACTTGATTGCACTAACTAATAACAGTGTGGACGGCCTGAACGGCGAATCCCCTCAAAACAAAACCAATGGACGCATCACTCTACAGAGACTGCAATCCACCCCGGTCAAGCTACCTAGCCAGTCTGTTCATGAAGTGGCTAATCCTGTGAACCAGTCCCAGCAGCCCCAGCAAACTGCTCCAGTCAAACAACCCAATACAAAAGTGCAGAAAGCAGCGCTGCATTTGGAGACTCCTGTTGATCAGCAGTCGAGTCATCCGGTGTCTGCTCCTCCCAATCTCCAGCCTTTCTTCCTCGGCGAAGAGCCCAACCCTCTTATTCAGCCCAGCTCACCTCCTTCAATCAAGGGAGAAATGTGTCCAACCTTTGACTGCCACACTCTGTTTACCCCTCCTTCTCCAAAACCGGCATGCCACCCCTCTCATCATCTCAAAGAGAACGGTTCCAGCAATCAGCATATAGATGACTTGTTTGACATTCTCATTAAGAGTGgagAAATTTCAGCCGGATTCAAGGCCAACCCGGATCCGTCCCTCTCTGACCTTCACTCAAATCCTCCCAGCCCTTCCCCTTCATCCTCACCACTGCACCTCTCACCTCCCACCCCTCCCTCTGACCCTACCCCTATCCCAAACGCGCACAAGCGGCCCTGCTCAGGAACAGTCCGTCTGGAAGACTTCCTGGAGAGCACCACTGGCACGCCTCTGCTCGGGGTCGAGCCCGACGGCCCTCTGACGCTGATCGACGACCTCCACAACCAAATGCTGagcacccccagcattctggaTCATCCTTCTTCCCCAATGGACACTGGCGACATGAGCTTCTCCTCCCATCCCCCCAGCTTGGACTTTGAAGACCCTGCCCTAGACGGCATGGATTGGCTGGACATATCTATGGGCGGAGGAGGCGGCAGCAGTGGCGGGGGGACGATTCTGGCCCCCCTGGGCTCACACACACCCCCAAGTGTGTTTTCAGCAGACTTTTTGGACAGTTCAGACCTGCAGATCCACTGGGACTGTTTGTAGCTTTGGTCTTAAACTGCTTAAACAGCAGATACAAAGCACCTTCATCCTTATACTGTGTACAtgcttttacacacaaacactccaaCCCACATGCTGTTTattatgctgaaaaaaaaaaaaaactgttttcttCATGCTCCACCAGAACAGTGTACGAGTGGAAAGGAGTTGTCTTGTTGAATAGGTCTATTAAAGCACTGAGTATTATCCCCTGCACCCTCAACCATCCATAAACATGTTACAGTACACTGCGCTGATGTGTTTGCCAACGAAGAGACCAATTTATACCCCCTGCTGTTTCCCTACTCCATTAGGAGCTATGTGTATCCAGAACAAGCCCCTTTACCCTTTTATCTGCAACCAAAATATTCTGGACCAGCCATTTGGCTGCTTACATATCAGACAAGAAATTCTAAGCTTGCACAAACAGTTAGATCATCATGGTTCTAAATGAAAAGTATTGAAGTCCtggccatttaaaaaaatatatatatttcacggCTTTATATTCAAAAATTTCAGATTTCCTCTGTCTTTTAGTGTTCAACCCTGTGGAATACTCCTCCCATGCCACATTGCTGTTACTCCACCTTCTGCTTTTACTGCTGGCACTGATGGAGTTTGGGCACATACTGATGGTAGAAAGGAttaagtagagagagagagaaagagaaagagaaggtcCTCTTCTTCTAATCTCAGAGTTTGGCTTTGGAGTAGCTTCCAGCATGCCAGTGCCTCCAACTTTGCACTTAAGATGACTGGGCCAAGTGTTCTGGTCTAAAGGAAACCTCCCGATCAATTGAACTCTGCTGGGAACCGGGTTTGGTGATGTTCACCAGATCTCTATGCATTGCTGTATTTGAGGTACATATTATTGACTAAAGCCTTCTTCTTCTCTGATTGTATAGATAAGCTGGTGGAGGTCAGGGCTGGGGTTCAGGTTTCAGAGTATttgcaaaatgttattttttagaaaagaaaataaaaccttcttaaaatGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45403 lncRNA downstream 1029 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 1506 1975829 ~ 1976108 (-) True G33731
TU45353 lncRNA downstream 114102 1862786 ~ 1863512 (-) True G33693
TU45350 lncRNA downstream 119899 1856968 ~ 1857715 (-) True G33690
XR_002649840.1 lncRNA downstream 250357 1720811 ~ 1727257 (-) True LOC111192345
TU45446 lncRNA upstream 57160 2074335 ~ 2074606 (-) True G33759
XR_002649842.1 lncRNA upstream 63800 2080975 ~ 2083243 (-) True LOC111192348
TU45517 lncRNA upstream 111092 2128267 ~ 2130172 (-) True G33804
TU45554 lncRNA upstream 174915 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 177112 2194287 ~ 2194607 (-) True G33835
XM_007259084.3 mRNA downstream 72985 1898185 ~ 1904629 (-) True xrcc6
XM_007259083.3 mRNA downstream 81621 1890271 ~ 1895993 (-) True LOC103046112
XM_022668889.1 mRNA downstream 88335 1879258 ~ 1889279 (-) True josd1
XM_007259081.3 mRNA downstream 99405 1870610 ~ 1878209 (-) False cbx7
XM_007259080.3 mRNA downstream 99406 1870610 ~ 1878208 (-) True cbx7
XM_022668891.1 mRNA upstream 4896 2022071 ~ 2034470 (-) False LOC103022010
XM_022668892.1 mRNA upstream 8385 2025560 ~ 2042303 (-) True LOC103022010
XM_007259095.2 mRNA upstream 38925 2056100 ~ 2066246 (-) True LOC103022929
XM_022668896.1 mRNA upstream 38925 2056100 ~ 2063662 (-) False LOC103022929
XM_022668900.1 mRNA upstream 57455 2074630 ~ 2085960 (-) False LOC103023976
TU45334 other downstream 164992 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 851147 1126395 ~ 1126467 (-) True trnar-ccu
trnaq-cug other downstream 852078 1125465 ~ 1125536 (-) True trnaq-cug
TU44782 other downstream 1576302 389469 ~ 401312 (-) False LOC111192416
XR_002649841.1 other upstream 5566 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 17919 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other upstream 18950 2036125 ~ 2042274 (-) False LOC103022010
TU45542 other upstream 151848 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 177582 2194757 ~ 2196095 (-) True G33836

Expression Profile