RNA id: XM_022668896.1


Basic Information

Item Value
RNA id XM_022668896.1
length 3776
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC103022929
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2056100 ~ 2066246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cccaaaagagcccatggtGATGTTTGTGTCACAGGCCctctaaaagaaatATTTCGCTCAGAAATAATGGCTCTGTGGATCTTCAGAAAAGATGGTTGCCTGGGGCCTAAAGTCTATTCCGAGGTCCCAGATGGAGGCTGGGGTTGGATCGTAGCTGTGGCCTTTTTCCTTGTTGAGGTCTTCACCTACGGGGTCATAAAAAGCTTTGGCATTTTCCTCAAGGATCTGATGTGCGAGTTTAATGAGAGCAACAGCCGAGTTTCGTGGATCGTCTCAATATGCGTGTTTGTAATGGCTTTCACAGCCCCGCTCTCAACTGTGCTGAGTAATCGGTTTGGCTTCCAGCCTGTGGTGATACTTGGAGGACTCCTCATTTCCATTGGAACAATCTCCACTGCGTTCACCAGCCACATCACTCAGATTTACATCACTATCGGGATAGTTGCTGGTTTGGGCTACTGCTTAACATTTCTCCCCACTGTCACAATCCTGTCCCAGTACTTCAGTAAACGCCGCTCCCTGGTGACTGCCATGGCCTCCACCGGAGAATCCTTTGCCATATTTGCTTTTGCTCCTGCATTTACAGCCCTGAAGGCAAACATTGGCTGGAGACACACAATGGTGGTGCTTGGATTATTACAGGGAATAATCGTTGTTTGTGGACTTCTGCTCCGCCCTTTGGTCATAAAGCCAAAGACGAATACTGAGAGTTTCACCCAACCTCTGAAATCCAGAAAGCAGGAGGTCATCAACTCTCTCCCTGAATCTGAACTTCGTGGCTCTTTAAGCTCTGGAGACTCGGGTGTACAGTCACTGGAAATGCCGGAACAGAGTTCTCCAGTGGGAGCACAGCAAAAAGAAGAGGAACATCTTCAGATTCCTCAAACCCAACCAGACAAAGAGGCAGAGCCAGGCAGAGGCAAACTCCTGGACCTCACGGTACTAAAGGAAGGCAGCTTTGTGTGCTATGCTGCTTTTGGCTTGTTTGCAACACTTGGATTCTTCGCCCCACAGCTCTACATGGTGGAGCTGAGTGTCAGCTTGGGCACTGAAAGAGACAAGGCGGCCTACATGCTGTCGATAATGGCCGTGGCGGAGATCTTTGGCCGTCTCTCCATCGGCTGGGTCCTGAACTGGGGGCGCATTAGGAAGATATTTATATTGCTTGGGTGTGTGACACTGATGTGTGTGGTCCTTGTGTTCTTCACGGTGGTCGATGGTTTCTGGGGGCTGGCAGTCTGCTGTGTGCTCTATGGCTTCCTGCTGGGCAACATCGCGTCCACACACATCCCCATGCTGGCAGAGGATGATGTGGTGGGCATCAAGAGAATGCCCTTAGCGGTAGGAGTTTACGTCTGCATTCAAAGTTTTGCAGGGCTTGCTGGACCACCTTTAGGAGGTGTTTTGGTGGACATTACTCAGAATTACAGCTCAGCCTTCTACTCTTGTGCTGTGGGAATGGGGTTAGGTGCACTCTTCCTAGGGCTGGTACATCCAGCGAAGACAGGTTGTCTGTGCACAAAGAAGTGCCTCAGCCCTTGCCAGGACATCCCTGCAGTCGAGCATGTGAGTGAGGATAAAGTTATGCCTGAGGAATTTCTAGAAGTGGACATTTTACCAAATCCTCAAGGTCAATCCTGAAAAAGCAGTCCCCTTTAACCTAAGAAACGATGAAATCTGTGATTGATTGATCACAGAACAGCTTTAAACTAGATGCTATTGTGAGGCTGAGTCACTTTATTCCTAAAACAAATAGAGATTTACAGTGTAGAGCttgtttttttactcttttctcaCACGGGTCACTTTACCCATCACAAGTTGCCTTAAAGAAGGGAGGAGGTTTTGGACGATGTCAGCGGCAGATGTCAGGACCACTGGCTTTTCACATTGAGAATGTAGTAATTTTACATCAGTTCATTTTAGCACTGATTTAGTCAATTACAATAAAGTGCCCTGACTGATATTAGCTTTAAAAAACTTGCAAAACTGGCTGATTGTGgaccatattttaatggattatGTGTCTGCTATTTTAAGCCTGATccagttttgatgcttttatttactgttctaGGAAACTAGAAATCTAACACACTATACATGATTATTTTAAGAAGTTGGCTACCAAACAGAATATATCGCCAAACCACCGATCGAGGACAGGTCTAATTATAATCAGGGTGGCTGTGGTATCACAAATCTTGCTATGTTCAAGCTGCAGGCAAATCGGATTTGTTCCTTAAGTCAGATCTGTTGAAAACGACTGTCTGCACTGTTACTCGAGAGTGACCAGATTGGATTTGCGTGTCCAGACATTACAAAcctgtatctgtatgggttgctaaGGTATCTCAGTCTGCATCTAAAACTAATGGTTGGTGTTAGGTGTTGGACCTTGCACTTTCTTCAATCTggatttttagtgtttttgtcaCAAATTATGCAAACGACACAAAGAAATCCAATTAGTGTCCATAGACAGAGACACATCTgattgcaaataaataaattgcaaaTAAATCAGATTGCAATCATATTTCAAACCACCTGCAAATGTGGTTTGGATTTAATTTGTATACATTTGTTTCTGTTCGTATTTACTAAAATCAATATAGATACAAtctacatatgacaaaaatctgatttagtcTAGCAGTCTGTACATAGCCTTGAACAGCTACACCACCTGGGAGCCGCCGTGATTTTTTCAAAGGTTTTATAGTTagaaacacaacaaacaacattatagtaaatacataaaatgcaaATACTAATGGAACAGAACTATGAACTACTAGATCATACTACACTGGGTTCTCTTAACtcttttatttccttattttgggattttactgaataaatttaaaaaaaactacagtacaCTGGAAAAGAAGACACAgaaaactatattttaaatcactggatttttattttatacttcaGATAAATGTACATAAAGAATGTTTCGTAAACGGTTTAGTGATTAATTTACTGCTAAGAAAATTTAACAATGAAAACCAGCTTGATATACAATGCAGCATTCATTTTATGTAAACATTTTGGaccaattattttaattttattgttttcaagACACTGACTATTTATTTACTGCTTGTAAATCTTTAAATCATCATATTGGTAAACGCATGAAAGTGCTTTCATGTTGAGAAATTCTCAATGTAAGGcattatatgatatgatattaaaattatataatgttttaGTGTAAAGAGATTTTAAGAATGTGCTTTAGACAAACGTTATCATAAAATAATGTCTCAGGCTTTAGGAAACTTTAGGAAAGTGGAGAAGCTTTAAGAAGGCATTTTACCTTAAGGATCATGTGTTCCTATTACTGTACAGAAAATCACGAGTGTCAGTGAGTGAATTTGCATATTAAGTATTAAATTATGCAGAATATACTGTATGACAAATCAGTGGAACATACTGTGAAAATGTCAATATACTGTGAATATTTCTTTACATATTAAGTGTCAGAATGTGAATGAAAAACTTACCAGAATGTAATCAAAAGAATGAGATGGTCAGTCTAAGttaaagcatttacaataaCTGTGAAGTGAAGGTCAACATTTTCAGCAGGTTAATTCTCATTTTTATAATTCTCATATTATTCTGGGCATTATTATTTGACTTGAATTTTGTATGTAtagaaacaaactttttttgtgattttgtcTGTAAGagcaatcacttttttttacacacacaatcatttttatctaaaataaaataacttaagtcATTTT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45403 lncRNA downstream 79515 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 79992 1975829 ~ 1976108 (-) True G33731
TU45353 lncRNA downstream 192588 1862786 ~ 1863512 (-) True G33693
TU45350 lncRNA downstream 198385 1856968 ~ 1857715 (-) True G33690
XR_002649840.1 lncRNA downstream 328843 1720811 ~ 1727257 (-) True LOC111192345
TU45446 lncRNA upstream 10673 2074335 ~ 2074606 (-) True G33759
XR_002649842.1 lncRNA upstream 17313 2080975 ~ 2083243 (-) True LOC111192348
TU45517 lncRNA upstream 64605 2128267 ~ 2130172 (-) True G33804
TU45554 lncRNA upstream 128428 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 130625 2194287 ~ 2194607 (-) True G33835
XM_022668892.1 mRNA downstream 13797 2025560 ~ 2042303 (-) True LOC103022010
XM_022668891.1 mRNA downstream 21630 2022071 ~ 2034470 (-) False LOC103022010
XM_007259091.3 mRNA downstream 49982 1977614 ~ 2006118 (-) False LOC103047336
XM_022668900.1 mRNA upstream 10968 2074630 ~ 2085960 (-) False LOC103023976
XM_022668901.1 mRNA upstream 12025 2075687 ~ 2087567 (-) False LOC103023976
XM_007259099.3 mRNA upstream 12025 2075687 ~ 2087537 (-) True LOC103023976
XM_022668898.1 mRNA upstream 12025 2075687 ~ 2085960 (-) False LOC103023976
XM_022668899.1 mRNA upstream 12025 2075687 ~ 2085960 (-) False LOC103023976
TU45452 other downstream 13826 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 13826 2036125 ~ 2042274 (-) False LOC103022010
XR_002649841.1 other downstream 21630 2022741 ~ 2034470 (-) False LOC103022010
TU45334 other downstream 243478 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 929633 1126395 ~ 1126467 (-) True trnar-ccu
TU45542 other upstream 105361 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 131095 2194757 ~ 2196095 (-) True G33836
TU45650 other upstream 239600 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 1117506 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1719463 3783125 ~ 3789192 (-) True prr15l

Expression Profile