RNA id: XM_022668900.1


Basic Information

Item Value
RNA id XM_022668900.1
length 1837
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC103023976
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2074630 ~ 2087567 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCTCTGGACTGAGAGATCAGCGCACTGTAGGGATGTTTCCTTTGGTAGCTCAAGAGAGGGATTTTCCCCTTAATATATTTATCACTCGAATCCTTGGGCTTCTCCAGTTCTGGCAAAATCAagaaccaaaagaaaaaaagctATGTCCTGTGTGCTGGTTCAGCTTCGGTAGGATGATCAAAAGTCAGGAAGATGAATTCATTGCCGTGAGGGTTCAGGATCCTCGGGTAGTGAATGAAGGATCATGGAACTCGTACGTGGACTTCAAGATTTTTCTTCATACTAACAGCAAGGCGTTCACAGCTAAAACCTCCTGTGTGCGCCGTCGATACAGTGAGTTTGTGTGGCTGAAGAGGAAACTGCAAAAGAATGCTGGCCTTGTACCTGTTCCTGACCTACCTGGAAAATCAGTGTTTGCCTTTAACAACACAGACTTCAtcgaaaaaaggagaaaaggtTTACAGAACTTCCTTGACAAGGTGGTTCACATGACCGTGTGTCTGTCAGACAGCCAGCTTCATCTGTTCCTGCAGACTCAGCTTCCTGTAGGCCACATTGAGGACTGTGTACAGGGACACACTCCATTCAGTGTTACTGACGCCATTCTGACCTACGCCTCCTCCAATCGCGGCTGGGCTCAAGAGGAAGAGGATGGGTCGGTGGAGCCATGCCCAGCTCCAATTTCTTATGAGTCAATGGAAAGtagccCTTCTCCCCATGTTCCCACTTTACAATGTGAAGGGGCTTCTGGCGAGCCGACGGTGGACACTACTGACCTCAACACTGTGGAGCTAAGAGTGTGTGAAATTGTTGCTACTGAACATAATACAGCTAACGGAGATGGACCAGAACAAAGAATAAAGGAGGAGAGCTGTAATAACCTGGTGGTGGAGGTCCACCACTATCATGGTTCTCTTTTGGGAGACACTAAAGAAGAAGTTGATCTCGTTGTGCCAGAGGAgacaacacaaacacatgacAACACAGGAGATTCCAGTAAAGAGATATCTTTGCAGtgttgCCCAGTTTGACCACTTGATGGAGATAAAACATGAAGATAGAAGTATACTTCTACAGTAATGTCAACAATGGAGCAGCTGTATTAGGACCCTCCCAATGCTATACTGTACCCCATGCTGAAGATAAGCCGTCCACACACCTCATTGAGATACTCGTGCACTTCCGAAGTCTAGTGAGGTGAGTAGTCCTGAATGGGGTTTCGGCTTAAGTCTGCAAGATGATAGTACTGTAGGACCAGTTTGATTTCAAGTAACATTTCCTAGTTCTCAGTGTTTGCGCCGCTTTTCTAACCCTTTGATTGTTAAaaggtaaatgtttttttttttcttattttaatgacaaatattaaaataatttaaaaacataaaaaaatattttattaaaaacgttTAAAACGGTGAACATATAAAAGGCCATTGAAATACAAAATGAGATCTAACACGCCAGGATAGGTATGGGTGGAATGGATAGCAGTATATAAATTGAGTGGAATTgcttgtgaggtgttatcttgtaaggctaaacactggccagcaatAGTGTGCAGTATCATATTGCAcacaaaaatattgaaaaactttttaaacaattatataGTTAAGTGTAACGAGTAGTAATGGTTGTGACTGGTGGCATCTGCCTAGAAATGTCCATACAAATATACAGATATCACATCcacattatactattataccCTTCATTTCTGTCTCTTGACATgtagcatgtcagtgtataactTTGCACTAATATCTTTAAACTGCTACCTATTAAACATTATCTGGAAATTGAAGGtgatacagctctaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45446 lncRNA downstream 24 2074335 ~ 2074606 (-) True G33759
TU45403 lncRNA downstream 98045 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 98522 1975829 ~ 1976108 (-) True G33731
TU45353 lncRNA downstream 211118 1862786 ~ 1863512 (-) True G33693
TU45350 lncRNA downstream 216915 1856968 ~ 1857715 (-) True G33690
TU45517 lncRNA upstream 42307 2128267 ~ 2130172 (-) True G33804
TU45554 lncRNA upstream 106130 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 108327 2194287 ~ 2194607 (-) True G33835
TU45586 lncRNA upstream 200310 2286270 ~ 2287428 (-) True G33853
TU45658 lncRNA upstream 232648 2318608 ~ 2318897 (-) True G33909
XM_007259095.2 mRNA downstream 8384 2056100 ~ 2066246 (-) True LOC103022929
XM_022668896.1 mRNA downstream 10968 2056100 ~ 2063662 (-) False LOC103022929
XM_022668892.1 mRNA downstream 32327 2025560 ~ 2042303 (-) True LOC103022010
XM_022668891.1 mRNA downstream 40160 2022071 ~ 2034470 (-) False LOC103022010
XM_007259091.3 mRNA downstream 68512 1977614 ~ 2006118 (-) False LOC103047336
XM_007259107.3 mRNA upstream 31580 2117540 ~ 2120383 (-) True snf8
XM_007259113.3 mRNA upstream 45058 2131018 ~ 2134043 (-) True chmp2a
XM_022668916.1 mRNA upstream 190797 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA upstream 190797 2276757 ~ 2281258 (-) True psme3
XM_007259140.3 mRNA upstream 538978 2624938 ~ 2637751 (-) True dhx8
TU45452 other downstream 32356 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 32356 2036125 ~ 2042274 (-) False LOC103022010
XR_002649841.1 other downstream 40160 2022741 ~ 2034470 (-) False LOC103022010
TU45334 other downstream 262008 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 948163 1126395 ~ 1126467 (-) True trnar-ccu
TU45542 other upstream 83063 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 108797 2194757 ~ 2196095 (-) True G33836
TU45650 other upstream 217302 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 1095208 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1697165 3783125 ~ 3789192 (-) True prr15l

Expression Profile