RNA id: XM_007259107.3


Basic Information

Item Value
RNA id XM_007259107.3
length 1371
RNA type mRNA
GC content 0.44
exon number 8
gene id snf8
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2117540 ~ 2120383 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCCTCAAAAATCACCAGAGAAGAAACAGCTACTGTTCCCTGATTGCGGAAAAAACATTAGAGCTTGTAGAAGATAAACAGTTAAACACTCCACAAACAGGGAGGAGAACAGCGCGTAATACAGTGTATTTTTACTCTGCAGTGCTCGTTTTTATTCAGATTAACTGTGGGTAACTTTGTGTTGTagaaactgtgtgtgtttacgcTGTGTGAGCTGATTCTGcgggttagttagttagagttaGCCGGTTAGCTCTAACTGAACTCAGCCTCATTTCTCCTGaaatctttaaatgttttaattctgGAGTGAATAACTCGGGAGTCGGCAGCAGCGGTCTCTTTCTTTATGTCtgttctgctctgctctgttgAAGTCTGTTCGGGTTCTGGGACTCTGAGGAGCAGCCATGCACAGGAGAGGAGTCGGGGCTGGAGCCATCGCCAAGAAGAAACTCGCAGAGGCAAAGTACAAAGAAAGAGGGACAGTCCTGGCTGAAGATCAGATTATACAGATGTCTAAACAGTTAGAAACCTTTAAAACCCATCTGGAGGAATTTGCCAGCAAACACAAGCAAGAGATTCGAAAGAGTTCACAGTTCAGAGTTCAGTTCCAAGAAATGTGTGCTACAATAGGAGTCGACCCACTAGCATCCGGTAAAGGATTTTGGTCAGAGATGCTTGGAGTTGGAGATTTCTACTACGAGCTTGGTGTGCAGATAATTGAAGTCTGTCTTGCTCTAAAGCACAGAAATGGGGGACTCATCACTCTAGATGAACTCCATCAGCGTGTGTTAAAGGGAAGAGGGAAGTTTGCTCAGGATGTGAGCCAAGATGACTTGGTACGGGCCATCAAAAAACTCAAAGCGATGGGGAATGGCTTTGGAATGATTCCTGTTGGAGGCTCTTATTTAGTCCAGTCAGTCCCCGCTGAGCTCAACATGGATCACACGGTCGTCCTTCAGCTGGCTGAGAAAAAGGGCTACGTAACAGTGAGTGAGATCAGAGACAGCCTGAAATGGGAGAAGGAACGGGCCTGTCACGTACTTGACCACCTGCTAAAAGAGGGTCTAGCATGGTTGGATTCCCAAGCTGCTGGGGAGCCACAATACTGGCTGCCCGCCCTGTTCTCTGAACTTTCTTCTCGTGATGTCACACCTGAGGAGGCTAACCAAATGACACCATGAACAGAAGAAATGATTTGGTATAAACTGAGAAATCAGTGACGATAATGTTTTCAACTAGGTTGAATACTATCCTTTATAGTGCTGAAATCACAATGTTGAGTGCTTCCttgatgtgtgtttgtgagagataACTGGTAGCTTGAATGTCTTGAAATGGATAATAAatcttttattttctataaa

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649842.1 lncRNA downstream 34297 2080975 ~ 2083243 (-) True LOC111192348
TU45446 lncRNA downstream 42934 2074335 ~ 2074606 (-) True G33759
TU45403 lncRNA downstream 140955 1976329 ~ 1976585 (-) True G33732
TU45402 lncRNA downstream 141432 1975829 ~ 1976108 (-) True G33731
TU45353 lncRNA downstream 254028 1862786 ~ 1863512 (-) True G33693
TU45517 lncRNA upstream 7884 2128267 ~ 2130172 (-) True G33804
TU45554 lncRNA upstream 71707 2192090 ~ 2192968 (-) True G33833
TU45556 lncRNA upstream 73904 2194287 ~ 2194607 (-) True G33835
TU45586 lncRNA upstream 165887 2286270 ~ 2287428 (-) True G33853
TU45658 lncRNA upstream 198225 2318608 ~ 2318897 (-) True G33909
XM_022668901.1 mRNA downstream 29973 2075687 ~ 2087567 (-) False LOC103023976
XM_007259099.3 mRNA downstream 30003 2075687 ~ 2087537 (-) True LOC103023976
XM_022668900.1 mRNA downstream 31580 2074630 ~ 2085960 (-) False LOC103023976
XM_022668898.1 mRNA downstream 31580 2075687 ~ 2085960 (-) False LOC103023976
XM_022668899.1 mRNA downstream 31580 2075687 ~ 2085960 (-) False LOC103023976
XM_007259113.3 mRNA upstream 10635 2131018 ~ 2134043 (-) True chmp2a
XM_022668916.1 mRNA upstream 156374 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA upstream 156374 2276757 ~ 2281258 (-) True psme3
XM_007259140.3 mRNA upstream 504555 2624938 ~ 2637751 (-) True dhx8
XM_022669429.1 mRNA upstream 1100964 3221347 ~ 3222998 (-) True LOC111192418
TU45452 other downstream 75266 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 75266 2036125 ~ 2042274 (-) False LOC103022010
XR_002649841.1 other downstream 83070 2022741 ~ 2034470 (-) False LOC103022010
TU45334 other downstream 304918 1810586 ~ 1812622 (-) True G33675
trnar-ccu other downstream 991073 1126395 ~ 1126467 (-) True trnar-ccu
TU45542 other upstream 48640 2169023 ~ 2177059 (-) True G33823
TU45557 other upstream 74374 2194757 ~ 2196095 (-) True G33836
TU45650 other upstream 182879 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 1060785 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1662742 3783125 ~ 3789192 (-) True prr15l

Expression Profile