RNA id: XM_022668916.1


Basic Information

Item Value
RNA id XM_022668916.1
length 1497
RNA type mRNA
GC content 0.39
exon number 11
gene id psme3
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2276757 ~ 2282984 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCGTTTTAATCTAAAGGCAATTAGAGAATTAAGGGAATTAGCTAACAGGAGGAAATGACAGCACAAAGGGTTGATGTTTTCAGAGAACGAATCACAGGAGAGGCCGAAGATCTGGTTGCAAACTTTTTCCCTAAGAAATTGTTAGAACTGGACCAGTTTCTCAAGGATCCTCTCATAAACATCCGTGAACTGAAAGAAATCCATTCTGAGATCAATCTGACTGTGCCAGATCCAATTCTACTTACAGACATCCATGACGGTCTTGAAGGGcaaaatgccaaaaaaagaaaacttgagGATGGTCCAGGAGATGACAAAGTTGGCGGGACCAAGGTCTATGTAATGCCTGGTGGAATGATGAAAAGCAACGGCAAACTAGTAGACCTTATTGAGAAGGTTAAGCCTGAAATCAGAACCCTCATAGAGAAATGCAACACGgTAAAAATGTGGGTACAATTGTTAATTCCAAGAATAGAAGATGGCAACAACTTTGGGGTTTCAATCCagGAGGAGACTGTGGCTGAACTCAGAACAGTGGAGGGAGAGGCAGCATCTTACCTAGACCAGATATCAAGatacTACATCACACGAGCAAAGCTGGTTTCCAAAGTAGCAAAATATCCCCATGTGGAAGACTATCGACGCACAGTTACAGAGATTGATGAGAAAGAGTACATCAGTCTGAAGATCATAGTGTCGGAACTGAGAAATCAATATGTAACTTTACATGACATGATTCTGAAGAACATTGAGAAGATAAAGCGGCCCAGGAGCAGCAATACAGATGCGCTTTATTAAGACCATCTATCTTCTCAACTAAAGCCCTTCCCTTCTCTCCACTGGGACTAGCTGGAACCTTGGACTGGTTCTAATGGaattacaaaaacattaaaaccaggcCAAGACCCACATGCTCCACCTGGCCTGGTGCAACATGCCGCTGATGATAGAACTGTAATATATGGTCACTGTTTTAAACCCTTTAAAGAACCCATTTTGATTTCCTAGTGGACAGTGTTAATGTATGGAGACATTTTGGCATTTTGACAtccagttttctttcttttttatttctcgttatttaattaaaagacTCTTTAAcaacaggttttcttttatCTGTCACAAAACCAAATGCAGTGTAGCACTTCTCTGGACGGTTCTAAggcattttacatgttttagatTTGTGGTGATGTCAGAGATGctcagtttctccagtttaaaaACTTTGAAGGTCTTATCGATGCTGTATTTTAATCAGTTGACTCTCTCCATCTAATATCAGTGTAGTTTAGAATGAAAGCTGTACTTGTGCATCATTTTACATACACTGAATTAGATGTTCATTTCTTGTCAATGAAATACAAGTATTttactttcttattttcttGTTCATTCATAGAATCACAAAGTTCCCAAATGCTTCTTATGGCTATTTTGTCCTGTTTCTTTTAAGAGTGATGCATTTTGCtgaataaaaacgtttttttttt

Function

GO:

id name namespace
GO:0008537 proteasome activator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45556 lncRNA downstream 82150 2194287 ~ 2194607 (-) True G33835
TU45554 lncRNA downstream 83789 2192090 ~ 2192968 (-) True G33833
TU45517 lncRNA downstream 146585 2128267 ~ 2130172 (-) True G33804
XR_002649842.1 lncRNA downstream 193514 2080975 ~ 2083243 (-) True LOC111192348
TU45446 lncRNA downstream 202151 2074335 ~ 2074606 (-) True G33759
TU45586 lncRNA upstream 3286 2286270 ~ 2287428 (-) True G33853
TU45658 lncRNA upstream 35624 2318608 ~ 2318897 (-) True G33909
TU45660 lncRNA upstream 50290 2333274 ~ 2334121 (-) True G33911
TU45659 lncRNA upstream 79366 2362350 ~ 2367740 (-) True G33910
TU45689 lncRNA upstream 232303 2515287 ~ 2544111 (-) True G33939
XM_007259113.3 mRNA downstream 142714 2131018 ~ 2134043 (-) True chmp2a
XM_007259107.3 mRNA downstream 156374 2117540 ~ 2120383 (-) True snf8
XM_022668898.1 mRNA downstream 190797 2075687 ~ 2085960 (-) False LOC103023976
XM_007259140.3 mRNA upstream 341954 2624938 ~ 2637751 (-) True dhx8
XM_022669429.1 mRNA upstream 938363 3221347 ~ 3222998 (-) True LOC111192418
XM_007259177.3 mRNA upstream 1057628 3340612 ~ 3380599 (-) True ogfod3
XM_007259176.3 mRNA upstream 1099791 3382775 ~ 3390578 (-) True LOC103047433
XM_007259173.3 mRNA upstream 1120963 3403947 ~ 3532389 (-) True myo1d
TU45557 other downstream 80662 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 99698 2169023 ~ 2177059 (-) True G33823
TU45452 other downstream 234483 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 234483 2036125 ~ 2042274 (-) False LOC103022010
XR_002649841.1 other downstream 242287 2022741 ~ 2034470 (-) False LOC103022010
TU45650 other upstream 20278 2303262 ~ 2309329 (-) True G33904
TU45820 other upstream 898184 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1500141 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 1500141 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 1500141 3783125 ~ 3789064 (-) False prr15l

Expression Profile