RNA id: XM_007259140.3


Basic Information

Item Value
RNA id XM_007259140.3
length 4430
RNA type mRNA
GC content 0.49
exon number 23
gene id dhx8
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2624938 ~ 2637751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACGAGAGCGACAGTCTCCACTCTTCACAACAACACAGCAGAGGCTGAAACATGGTGGATGTGGGAGAAGACGAGCTGAAACAGCTTGAGTATCTGTCTCTAGTGTCTAAAGTCTGTACTGAGCTCGATAACCACTTGGGGATCAGCGACAAGGACCTGGCTGAGTTTGTCATCAGTCTTGCAGAGAAAAACCCAACATTTGATGGCTTCAAATCAGTGCTGCTCAAAAATGGAGCTGAGTTTACGGACTCGCTCATCAGCAATCTGCTTCGTCTCATTCAAACCATGCGACCACCACCTGAACCATCCACAAGTAAAGGTGAGCCGGTTGTCAAGCcaaagagtgagaaagacaaGTTAAAGGAGCTGTTTCCAGCCCTCTGCAGACCAGACAATCCCACCACCAGGACCATGCTGGATGAAGATGATGTGAAGGTTGCAGCCGATGCAATGAAAGAGTTGGAGATGTTTATGCCCAGTGCTTGTGGACCAGACACAAAGAGCAGCAAACACAGATCTGAAGGTGCCAGCAGCAGCAAGAAAAGTCGCAGAAGCCGCAGTCGGAGCAGAGAtcgagacagagaaagagacagagatcgAGACAGGGACCGGGATAGAGACAGGGACAGGAGGAGACGTCACCGCTCACGTTCACGCTCCCGCTCTAGATCTCGTTCTCCAGTTAAGGAGAGAAGACGCAAGACCCGCTGGCATTCCCGCAGTCGGTCCAGGAGTCCTGGCCGAGGAGATCGTGGAGAAAGAGGAGAACGAGGGGATAGAGGAGATAGAGAACGAGGGGATAGAGGAGATAGAGAACGAGGGGATAGAGGAGATAGAGAAAAGGGTTCAGACCGCTGGAAGGACAAACATGTGGACCGCCCACCCCCAGAGGAGCCATCAGTGGGAGACATCTACAATGGCAAAGTCACCAGCATCATGCAGTTTGGCTGTTTTGTTCAGCTAGAGGGGTTGAGGAAACGTTGGGAAGGGTTGGTTCACATCTCTGAACTTAGGAGagagggcagagtggcaaatgTGGCAGACGTGGTCAGCAAAGGTCAAAGGGTCAAAGTCAAGGTGTTGTCCTTTACAGGCTCTAAGACCAGTCTCAGCATGAAGGATGTTGACCAAGACACGGGTGAGGACTTGAACCCCAACAGGAGAAGGAATGTTGGGGGAGAGGGTCAGGAAGAATCAGCCATGAGGAACCCAGACAGACCCACCAACCTTAATCTGGGTCATGCTCCTGAGGTGGAGGATGACACACTAGAACGCAAGAGACTCACCAAGATCTCTGATCCTGAGAAATGGGAGATCAAACAAATGATTGCTGCTAATGTCCTCTCAAAAGAAGAGTTCCCAGACTTTGATGAGGAAACTGGGATCCTGCCTAAAGTTGATGATGAAGAAGatgAGGACCTTGAAATTGAACTGGTGGAAGAAGAACCGCCTTTCCTGCGTGGGCACACCAAACAGAGCATGGATATGAGTCCTGTGAAAATTGTGAAGAACCCTGATGGCTCACTGTCTCAGGCAGCCATGATGCAGAGTGCTCTGGCTAAAGAGCGAAGGGAAGTGAAGCAGGCACAGCGGGAAGCTGAGATGGACTCCATCCCCATGGGCCTCAACAAACACTGGGTCGACCCTCTGCCTGACACGGATGGAAGGCAGATTGCCGCCAACATGAGGGGCATCGGCATGATGCCCAATGACATCCCTGAGTGGAAGAAACATGCTTTCGGCGGCAATAAGGCCTCATACGGAAAGAAGACACAGCTGTCCATCATTgagcagagagagagtctgCCCATCTACAAGCTTAAAGAGCAACTCATTCAGGCTGTTCATGATAACCAgattctgattgtgattggagaGACGGGCTCTGGGAAAACCACTCAAATCACTCAGTACCTAGCTGAGGCCGGATACACAACACGTGGGAAGATAGGGTGCACACAACCCAGAAGAGTGGCTGCCATGTCTGTGGCTAAGAGAGTGTCTGAAGAGTATGGGTGTTGTTTGGGACAGGAGGTTGGTTATACCATCCGTTTTGAGGATTGTACGAGTCCGGAGACTGTCATCAAGTACATGACGGACGGTATGCTGCTGAGAGAGTGCCTGATTGACCCTGATTTGGGCCAGTATGCCATCATTATGTTGGACGAGGCTCACGAGAGAACCATCCACACTGATGTACTCTTCGGCTTACTTAAAAAGacAGTACAGAAGCGCACAGACATGAAGCTCATTGTGACATCTGCTACACTGGATGCTGTGAAGTTCTCACAGTATTTCTATGAAGCCCCCATTTTCACCATCCCTGGTCGTACCTACCCTGTAGAAGTTCTATACACTAAAGAACCTGAGACAGACTACCTGGATGCCAGTTTAATAACGGTCATGCAGATCCACCTCACAGAGCCTCCAGGCGACATTCTGGTGTTCTTGACGGGTCAGGAAGAAATCGACACGGCGTGCGAGATCCTTTACGAGCGAATGAAATCACTCGGACCTGACGTTCCTGAGTTGATCATTCTGCCTGTGTACTCTGCCTTGCCCAGCGAGATGCAGACCAGGATCTTTGACCCAGCTCCACCTGGAAGCAGAAAGGTGGTCATTGCTACAAACATTGCTGAGACTTCACTGACCATTGATGGGATCTACTATGTGGTGGATCCAGGTTTTGTCAAGCAGAAAGTGTACAACTCCAAAACAGGCATTGACCAGCTAGTGGTGACTCCAATCTCTCAGGCCCAAGCTAAGCAACGAGCAGGCAGAGCTGGTAGGACTGGACCTGGGAAGTGCTACAGACTGTATACAGAACGTGCGTACAGAGACGAGATGCTCACCACCAACGTACCTGAGATCCAGAGAACTAACTTGGCCAGCACTGTGCTTTCTCTCAAGGCTATGGGCATCAATGATCTGCTATCATTTGACTTCATGGACGCCCCTCCTATGGAGACTTTAATCACAGCTATGGAACAGCTGTATACGCTAGGAGCTCTGGATGATGAGGGACTGCTCACTCGTCTTGGACGCAGGaTGGCTGAGTTCCCTCTGGAGCCCATGTTGTGTAAGATGCTCATCATGTCTGTCCACCTGGGCTGCAGTGAAGAGATGCTGACCATCGTGTCCATGCTCTCTGTGCAGAACGTTTTCTACAGGCCGAAGGACAAACAGGCCCTGGCTGACCAGAAGAAGGCCAAGTTCCACCAGCCTGAGGGAGACCACCTGACCCTCCTGGCTGTGTACAACTCTTGGAAGAACAACAAGTTCTCTAATCCTTGGTGCTATGAAAACTTTATTCAGGCACGGTCTTTGCGGCGTGCACAGGATATCCGTAAACAGATGCTGGGCATCATGGACCGaCACAAATTGGACGTATTCTCTTGTGGCAAGGCCACAGTTCGAGTACAGAAGGCAATCTGCAGTGGTTTCTTCCGTAACGCTGCCAAGAAAGACCCTCAAGAAGGTTACAGAACCCTCATTGACCAGCAGGTGGTTTACATCCACCCTTCCAGTGCTCTGTTTAACCGCCAGCCTGAGTGGGTGGTGTACCATGAATTAGTCTTGACCACCAAAGAGTATATGAGGGAGGTGACCACCATTGACCCCCGCTGGCTGGTGGAGTTTGCTCCAGCCTTCTTTAAAGTGTCTGATCCGACTCGCCTCAGCAAACAGAAGAAACAGCAGCGCCTGGAGCCTCTGTACAACCGTTACGAGGAGCCCAACGCATGGCGAATCTCCAGAGCTTTCCGCAGGCGGTAGAACACTCCTACAAGATCTCTATAGACTGCCTTTGTCCAGTACTGCTGTTAAGGGGTAGATCCACACCTACCTACACAGTGAAAACAGGCTGGATTGCTCCAACACGAATGTTAAAGATTTGGACCCTTTCAccatcatttttttcctttaactaTTTATCGATTTAAGGGAAACTTCTCAGTTTAAAGAAAACTTTAGATTTTGAATAAACCAACTTACGACATGTtgtaaattattgtaaaatgtttcagattaaactttttttaaaggtctttATGTGTAAAAGCATGTAGATTTAATCTGAATCTTTAGATCTGAATTTCAAATACCTCCTTACTCCCTATATAGTGAACGCAAGTCATAAAACGACAACATTTATAAGCAGATAGCACTAGATTTCAGATATCAACATGTAAATACTGTTCCATTACAAATATAGAATGCTCTGTTTAGATTGAGAATCCATAATTTTGTTCCTTGCATCGCACGCTACAGAGATTACAGTGTAATTTGGGATTGGACCCCTTTCCAGCTTCTTGGTGGTTTTAAGGTCTCACTGAGGTACTATTGAGGTACTATTGAGATACGTTAGAGGTACAGATGGCCCATACATTGCTAGCATGCTCATGAAAGTGTTTCCATCTAGGtgaggtttt

Function

GO:

id name namespace
GO:0070054 mRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45696 lncRNA downstream 21749 2574387 ~ 2603189 (-) True G33944
TU45697 lncRNA downstream 21749 2575033 ~ 2603189 (-) False G33944
TU45689 lncRNA downstream 80827 2515287 ~ 2544111 (-) True G33939
TU45659 lncRNA downstream 257198 2362350 ~ 2367740 (-) True G33910
TU45660 lncRNA downstream 290817 2333274 ~ 2334121 (-) True G33911
TU45809 lncRNA upstream 422618 3060369 ~ 3085406 (-) True G34036
XR_002649845.1 lncRNA upstream 469451 3107202 ~ 3189436 (-) True LOC111192350
TU45895 lncRNA upstream 753878 3391629 ~ 3399113 (-) True G34101
TU45962 lncRNA upstream 1090891 3728642 ~ 3728960 (-) True G34159
TU45973 lncRNA upstream 1140149 3777900 ~ 3781741 (-) True G34166
XM_022668916.1 mRNA downstream 341954 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA downstream 343680 2276757 ~ 2281258 (-) True psme3
XM_007259113.3 mRNA downstream 490895 2131018 ~ 2134043 (-) True chmp2a
XM_007259107.3 mRNA downstream 504555 2117540 ~ 2120383 (-) True snf8
XM_022668899.1 mRNA downstream 538978 2075687 ~ 2085960 (-) False LOC103023976
XM_022669429.1 mRNA upstream 583596 3221347 ~ 3222998 (-) True LOC111192418
XM_007259177.3 mRNA upstream 702861 3340612 ~ 3380599 (-) True ogfod3
XM_007259176.3 mRNA upstream 745024 3382775 ~ 3390578 (-) True LOC103047433
XM_007259173.3 mRNA upstream 766196 3403947 ~ 3532389 (-) True myo1d
XM_007259172.3 mRNA upstream 907682 3545433 ~ 3555219 (-) True LOC103046317
TU45650 other downstream 315609 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 428843 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 447879 2169023 ~ 2177059 (-) True G33823
TU45452 other downstream 582664 2035094 ~ 2042274 (-) False LOC103022010
TU45451 other downstream 582664 2036125 ~ 2042274 (-) False LOC103022010
TU45820 other upstream 543417 3181168 ~ 3194377 (-) True G34046
TU45985 other upstream 1145374 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 1145374 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 1145374 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 1145657 3783408 ~ 3789064 (-) False prr15l

Expression Profile