RNA id: XM_007259151.3


Basic Information

Item Value
RNA id XM_007259151.3
length 6742
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC103039858
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3861574 ~ 3870176 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAGAATGGAAAAAAGACAATTGGGGAGAGGAGAGCGCCCGCGGTCCTGATGGATATAACACGATCTCGGACAGTGTCTGCAGCACCAGCAATCCATGCAGGGTTTGCACCCATGTGAGCCCAGTTGTCTTATTTTCAATGGCATGGAAGAGAATATATTCACTggttcttttttaaatgttgcctTTGCAAATGGACTTTGCTCACTACACCACTTTGATGAAAGTGAAGACGAGCAACTCACCTTTGAAAAAAGGTGCCCCCTACTACCATACTCGAACTGGTTCATATTAATATTTGGCATCATTCTGTTTTACCATTATGGATATCCAAGGGCCAGACAGGACCAAAGGCTTTTCATGCAGGGGTTGTGGTATTGTATGTTTAAACATGCCCAGCCTTTTGGAGCACACGGAAGTTTGTCAGCAGTCGGATGGCGATCGAAGGTTTAAATGTGATGAATGTGGTCGTGGATATCGACATGCTGGCAGTTTGGCGAACCACAAGAAAACACATGAGGTTGGAACCTTCCAGTGTCACATATGTGCCCGGAAACTATCTAATGCTCTAGCGCTTAAGAGTCACTTGCGTATTCACACATCACGAAAGAAATATTCTTGCATGGATTGCGGGAAAGCCTTTCGCTTAGCAACTCAGCTGTCTACTCACCAAAAGGTCCATCGCAATAGGGAGTTAAGGGGAAGGACCAAAAGCAGTGTCTTGACACAAGAACAGGCTGAAAGTGTTTGTGAAGATGACCAACTGCATGATGTCGATGAGCAGGATTTCAGTGTGATGCCAGGTTTGCCACCAGATATAGAGTTAAATGTTGCCCATGAGAATAGTTTTAGCAATGGTCTTATGTCAGAGCTCATTTCAAATGTTATCCCTGAAAGCGACACCATAGCTAATGGCGATAATGGGGACCGACCATTTAAGTGTGACATGTGCGAGAAGACTTACAGACATCATGGAAGCTTGATAAATCACAAGAAATGTCATCAAATGGGAATATTTGAGTGTACAGTCTGTTTCAAACAGTTTAACAATCTTGCTGCCCTCAACAGCCACCAACGAATTCACTATAAAATCAAAGGTCGCCCCAGCACAGTTACCCCAGCGCCCTATCAAAACTCTAAGTCAGAGCAGGTATCTGCAGGTGTTTTGCAGAATGGGGCCACAAATGTACATTTCTGTCACCTTTGTCAAGTAGCATTTGCTACTGATGATGAGTTTCAGAATCACATAATGTTGCATAACTCTTCTTCAGTGTCCTTTGAGCTCCCTACCAGCCTACCTGAGGACCATGATTTTTCGTATAACCATAGTATCGCCCAGTCTCCCGAACCTGTTCCTTATCCTTCCTCCAGTGACACCCCACCGTTGCCTCCATTACTCGATAAAGCTGTTGATTATGTCCAAACCCAGGGGCCAATGGAAAATGGTCATATTTACGTACCTCATCCTATAGGTGATGACTCAGCTGTTATAGACACTCAGGGAGGGCCTTTGGCTCTGCCATCTGAAAACCTCAACCCTGAACTATTGGAGCAAACTACTGATGATGGTAAACATGATGAAGCTGTTAGCTCTGACCGCCGTTTTAAATGCAACATTTGTGGCAAAAGCTACAGACATGCAGGTAGCCTCATTAACCACAAACGCTCCCATCAGACAGGAGTTTTCCAGTGTTCAATTTGCCGCAAGAACTACCCACATCTGGCTGCCTTGAGAAGCCACCTTCGTATACATAAGGGCAGGCCTTCCTCTTTAACTGCCTCTGCTGAAGGTGACTGGCTTTCCTCTGAGCCCCTGACACATGAAAATCAGCATGGTGGCTTTGCGTCTCACGAAAGTGATGTTAGTGGTATTTTAGGCGTCCCTCAGGATCTCGGAGACTCTGTGGGCATGAATTCTGATGAGGAGCTGGATGAATTCCAAGAGCAGTTTCACAGTTCCTTCGCTGAGGACAGACAAATGCACCTACCTCAGGGTGAAGCCCTCATGGAGAGGCACATGTGTGCAGACTGCGGAAAGACATTTTCTGATATTGCAGGGATCAAGTCGCACATGTGTCCCCTCCTGAATCAGCAGTATCAGGTCATGCCAAATGGCTTAGATGGTCACATGGACTATAAGACTGAAAATCGTCCGCAGCCCTTGGGAGATTCAGGAGAGCCTATTGGTTTTGAGGGGCAGAATGGTGGCACGGTGGATACCTATTTTGCAGGGCAAAACTTTCATGACACTATGCATGGCCAGATGATGCATGACCATGAAGATAACGGTCACTGTGAAGAGGGTAATGCAGATGATGATGAGTATGAGGatggtgaggaggaggaggaggaggaagaagatgGAGAGATGTATCAGTGCTCTGTGTGTGGAAATCACTACACCAGCATGCGGGAACTGAGGAGTCACCTCCATACTCACACTCAAAGCCATGACACACCTTCAACATCTGGCCCCTCCTCTATGTCCTCACTCGAAGCAGAGAAAGACGATGAACCAAATGAGATCCAGCATAGTGACTGCAGTCTGATTATTTGTAGCACTTGTGGAGAAAGTTTCCTAACAAAACAGGACCTACTAGCCCATCAACTTCTGCACAGCAATTCTGTGGTTTGCCAGACTGAACAGTATGTTACAGAAAACCAGAATCAAATCGaaccaaaagaagaaaaagagagcatCATATGTGGGAAGTGTGGAGTGGTCTGTGCCAGCAGTCATCAACTTCAGAACCACGACTGCACTGGACAAAGAACTGAAGAACCTGAACAGTGTGAAGAAAAGCCAGATATTGGGAATGTTCATGGACAAGAAGCTGGATTGTTCAAGGAGTGTCTAGGCAGCGGAGATAGGCAGTATAAATGCGAGCAATGTGGACGCTCATACAGACACGCTGGTTCACTCCTAAATCACAAGAAGTCGCACAAAACTGGGGTGTTCCGTTGCTTTGTTTGCCAGAAGCGTTTTTATAACTTGCTGGCTCTAAAGAACCACCAGAGGACACATTTTGATGTAAAGAAGCACAGTTGCACAGAATGTGGGAAAGCTTTCAAAATCCACAAACAATTGGTAAACCACCAGAGAGTTCATCAGGAAAACAAGGCCAAGATTGAAGAACTCAATAAACAAATTCAGACGCTTATGCAGATGAGTGGGAATGTCTCTGTAAGTGGAATGCACTCGCAGGGTACCAGCAGAAAAAGGAGTAGTCGGCGGCGCAAGCAGAAAGCCCCTCCTAGTAGTGACCAGTCCAGCCCAGAAAAGAACAGCCAGTCAGAGGATCCTAATGACCCGCGGCCTTTTGTTTGTGACCAGTGTGGGCGAAGTTATCGGCATGCTGGAAGTCTGGTCAACCACAAAAACTCACACAAGACAGGAGAATATTACTGTGCTGTATGCAACAATACCTATTCCAACCAGTTGGCGATGAAGAACCATTTACGTATTCACTTTTCAGTCAAAAAACACTGTTGCCAGGACTGCGGGAAGGCATTCCGTGGCAAGAAACAGTTACTGAACCACACTTGTTCACAAAACCGCAAGAAGAATGCAGCAGCAGGGTCGAGAGGAAAGGCTAGGGGTCGCAGAAGAGCAAAGGCTTTAACATGCAAGCAGTGCAGCCTGGCATTTTCCACTGCTGACCAGCTTGCAAACCATATCTGTAGCAAACAGCCTGACACTCATGCTGCTCATGAGCAAAATGGCAAAAGCAATGCACCTGCAGTCAAAGAAGAACGACCGTTCAAATGCAACATTTGTGGCCGAAGCTATCGCCATGCAGGAAGCCTGTTGaaccacaaaaacacacacaaaactggTCATTTCACCTGCTCTTTCTGTGCCAAGCCTTTTTCCAATCCCATGGCACTACGTAATCACActcgcatacacacacagaagaaaaaGTATGTTTGCCCAATCTGCGGTAAAGCTTTCAGACTCTCTAGCATCCTCTACAACCACCAAAAAATCCATGCCAGAGGAGTCACTCGTTATAGTTGCCAGACATGTGGTAAGAGCTTCCAGGGAAAGTCTGGACTTAAGAGACACCGCTGTTACAGAAATGGCACATCGTCTCCTGCTGTTAATCAGGATAGCGCAGACAAGTGTTACACATGTGATCAGTGTGGTCGTTCCTACAGACATGCTGGCTCTCTTCTCAACCATAAGAAGAGTCATTCTGCTGACCTCCTCAATTGTACTCTCTGCCTCAAAACATTCACTGATCCTCTGGACCTTCAGAGTCACTCCCAGATGGCCCGCCACTGCTGCCCAGATTGTGGAAAGACCTTTTGTGAATTTGcacacctgcagaaccacaTGGAAGTGCACAGCAAGGGGCTCCCTTACTATTGTGCTCCATGTCAGCAGAACTTTCCCAACATGGCCAGCTTTCAACAGCACCAAGTAGTCCACCGTGGCATGCAGGGCCAGCCACATCACCAGGGCATGCATATGTCGCAGGATTTGGAATGGGACTCTGAGCTGGACCAGCAGATGGGGCTACAAGATCTCCCCAAGATGAATCCGGCTTTTAACCAAATGCACGGAGCGTTGTCTGAACAGCAAGGTCCACACGAAAGCATGGAGGCAGTAGCAAAAGAGGAGAAGAGCCACGTGTGTGAGCACTGTGGACGTACTTACAGACATGCCGGATCCCTGCTTAACCACAAGAACAGCCACAAAACGGGCTCGTTCGTCTGCTCAGTGTGCCAGAAAAAGTTCAACAACCTGATGGCGCTGAAGAACCACCGACGTATTCACACAGAGCCTAAGCGCTACCAGTGCCTGGAATGTGGTAAGGCCTTCCGAGTGTCCACTCAGCTCATCTGTCACAGACGTATTCACACCAAAGAGAAGCCCTTCTCCTGCCTGCTCTGTGAGAAGCGTTTCTCAAGCAAGTCCAACCTGCGACATCACCAGAAAATGCATCAGAACTCCCAGCAGTCGTTCGAGTCCTCTTTCAACATGGACCCTAATGCCTTCATGGGACTGGGTGTGGACCCTTTCCTCTGAGGCAGGATTTGCGGGGCCCGTACTCAAATCCCTGTGTTCCAAGGGAAGATATCAGAATGAACCTCTTCCCCCACCCAAGGCCCAATGCCAATAATCGTAAAACATCAGGTTTTTCTGCTGTATTTGTCAAGACGGTGTCCAAACCAGATGCTGATCTTGGCAAGAGTTGCCTCCTGTactgttgtatttttaaatatatttctttaaaaggACATTTAAGACTGGCATTGATGCGATACTACCTCTGGTAGGGACAGTGATACTGTAGAAACTAGAATAAGTGATGGTGCCTGTCAGAAACCATTTTAGATTTGAATGTTTCCTTTTTTAACTTTCTTGTCTTCTCACAGAGTGCACAAAACTAAAGAATTGTATGGTACTATGGTAGATCTAAAACTGAAGACTAGGGTCGGAGTATATTTGCCCAGAGCTTTTACCCCAGCACCGCCTCAAAGAGTAGAGTCCGACCGATTATTTGGTGTATAATAAAAGAAGGGCGAAACCAGTGCAACAGAATGCACCTTGCCCTCAGACTTAATGAACTTGTTAATGTTGTAGTTGTGGATGAGAAGGATGTCCATGTCCTTAATGTCCATGTGCTTTCATGTTTCCAGGTTATTGTACTTCTCATTATAGAAATGAATTCTGTAATCACTCACTTCATCAGTGTCTTATTTAGTACAACTTTCAGAATTGTTCAAGTCCTTCCTTCACTTTGACACTGTTAAGGCTGTTAAACAGCAACAGTAGAATTAGTATAATTGTCCTGATACCTGtcaaagatatttatttatttatttaaaaatctatttatacCCTACACTGCTAATTGAGAAAAAATATCATCACTGTTTAATGTGGTAACCCTTATGCATGGTATTAGATGTGCTTTAACAGTAATTAATTACTTGGGTATTGTAGATAATGGTTCTTATACATTTTATAGGATATCTCCTCCAGAAGCATTTCAGGATGATGTATTTGTATTAACCAAGGGATCAGGTTATGTACTGTTATTTTctcaatgtgtattttaaatgtattctcTTGTATGTCACTTTTATTTAATCCAGTTTATGTATGTTCTTCTCGAAATGACTGCTGAGTAAAAGACCATGGTTAGACAGTGAAAGAGAATGTGTAATCTTACAGATTGTGTTGCTAATGGACCCTAAAATCCTTGATCGGTCGGGCTCTATGATGGGCAGGAACACCTTGATGGCGGacaaaggtgtttttttttttttcagtagttaaaaaaaatgctcaggTTTCACACCTCAATCAGTAGGtagaatttaaataattacaccACATTTTGTTTCATGAACAAAGCATTGGAAGGCATCTGTATTTTTTCAGGATATGATGCCAGGTTGGATTTATGTGCCATTTCATATCATAGACCTACTTAGGATAAACTTAATAGTAGATTCCATGTATGCCTATATTTCAGTGCTTACTGATTATTTATGAGTAGGAGTTGCAGACCTTCACAGCTTAAGTGCATTTTACATGAAACTCCACTGACTTCTGAATCTTTGAGGTTCTCTGTAATCAGTTGCATATATCTTAAATacagaatatttatttttgttcttataATCGATGTTTCTGTTTCTCAAGTAGGGGACTAAGCAGATACTGTTTATTTGTAGATGTTCTTGCCCTCACTTCCTGGAACtgaataaacacagtgtaaatgTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46051 lncRNA downstream 18847 3840003 ~ 3842727 (-) True G34218
TU45973 lncRNA downstream 79833 3777900 ~ 3781741 (-) True G34166
TU45962 lncRNA downstream 132614 3728642 ~ 3728960 (-) True G34159
TU45895 lncRNA downstream 462461 3391629 ~ 3399113 (-) True G34101
XR_002649845.1 lncRNA downstream 672138 3107202 ~ 3189436 (-) True LOC111192350
XR_455620.2 lncRNA upstream 10406 3880582 ~ 3883412 (-) True LOC103038927
TU46069 lncRNA upstream 33158 3903334 ~ 3903569 (-) True G34230
TU46071 lncRNA upstream 40113 3910289 ~ 3910512 (-) True G34232
TU46077 lncRNA upstream 54266 3924442 ~ 3924669 (-) True G34238
TU46079 lncRNA upstream 55305 3925481 ~ 3925690 (-) True G34240
XM_015608398.2 mRNA downstream 22017 3836623 ~ 3839557 (-) True ccdc189
XM_022668923.1 mRNA downstream 32211 3823918 ~ 3829363 (-) False cbx1
XM_007259156.3 mRNA downstream 32245 3823918 ~ 3829329 (-) True cbx1
XM_015608359.2 mRNA downstream 54556 3802912 ~ 3807018 (-) False LOC103042441
XM_007259159.3 mRNA downstream 54596 3802912 ~ 3806978 (-) True LOC103042441
XM_015608330.2 mRNA upstream 13838 3884014 ~ 3893352 (-) False LOC103038619
XM_022668928.1 mRNA upstream 14096 3884272 ~ 3893361 (-) True LOC103038619
XM_022668927.1 mRNA upstream 15148 3885324 ~ 3893365 (-) False LOC103038619
XM_022668926.1 mRNA upstream 15148 3885324 ~ 3893362 (-) False LOC103038619
XM_022668925.1 mRNA upstream 15148 3885324 ~ 3893361 (-) False LOC103038619
TU45989 other downstream 72382 3783408 ~ 3789192 (-) False prr15l
TU45987 other downstream 72468 3783125 ~ 3789106 (-) False prr15l
XR_002649848.1 other upstream 1387706 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 2037798 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 2065659 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2595192 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 2666845 6537021 ~ 6541364 (-) True G34953

Expression Profile