RNA id: XM_007259156.3


Basic Information

Item Value
RNA id XM_007259156.3
length 3428
RNA type mRNA
GC content 0.39
exon number 6
gene id cbx1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3823918 ~ 3829363 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcctctGTAGATGCTCTCTGGTAGATATtcgcttttttatttttgttttattttcttttgtttaaactgaactgagctgagagagagtgataataaataatttgtgaCTAATTTTCCACAGGTACTCAGTGGTAGCGGGGTTGTTCCTGTAGTTGGGGGCAGAGCTCCAGAACGCGTGCGCTGAGCCGCAGGGCTGCTGGAGCTGAACTAGCCGACCATGTTTTTCCTCTGTAACTGATCCACACTGTAGCCCCAAAACAGCGTTTTCCCTAGTCGAGCCCTTACAGCTGTGCTTGAAGCTGGACTTATGTCAGTGCGTTTCGCTGCAGCGCCTTTTGTACACGCGGGCTAGCTACAAGTGTTAAAATCCTTTGGAAATATGAGCCAAATTACAGAGACCCCGCCTGTTGAAGCTCCTAAAGTGACAGAAGTGCTCACAGATCCTCCCCCTCAGACTGAGGCCAAGCCAGTAACAGCAGGaggaaagaaacaaaataaaaagaaagtggAAGAGgtggtggaggaagaggaggaggagtatgTTGTGGAGAAAGTCCTGGACCGACGTATTGTGAAGGGAAGAGTAGAATATCTCCTCAAGTGGAAAGGCTTTACAGATGAAGACAATACCTGGGAGCCAGAAGAAAACTTGGACTGCCCAGATCTAATCGCAGAATACCTGCAGTCCCAGAGAAATGCCAGCGAGTCTGGCTTCAAGCGGCGCTCCGACGCTGATGGAGATGTAAAAGAAAGCCAATCTAAAAAACGCAAGGATgagCCTGAGAAACTCAGAGGCTTTGCTCGTGGGTTGGATCCTGAGAGGATTATTGGTGCTACAGACTCAAGCGGAGAACTCATGTTCCTGATGAAATGGAAAAACTCTGATGAGGCAGATCTTGTACCAGCTAAGGAGGCGAATGTGAAGTGCCCACAAGTGGTCATTTCATTCTATGAGGAGCGCCTCACATGGCATTCTTACCCCACTGATGAGGAAGAGAAGAAGGATGAGAAAAAGTAGATGAAAGTCAGGTGCTACTAGGAGTTCATGCTGTAAACGGCAGTCATCAAAATGCACtcctctgtttttaattttagaaagaaaaagaaagtttaTATGATTAAGTCCCAGCATCTGAAATCAGTAACTGAAAAGTTACTGTAATTTACGTAGGTTTGTCACACTTTGCCATGTAATCATGTAGCGTACATCTAACATATCACCTTATAGTTTACAGTTTTAGCTGTTGCAATCTGTTACCTCACCGTTTACCAACCCTCCTCTACTCTATCCATAATTGGACAGGGACCACCATAGGAAACCACAACTGACCAGATCTTTTTAGGTTTTAGGCAAAGAGTTTTAATCTCGGCTGTATACATACCAGTTCTTTAAATTAtgcaattactgttttattgtttttttttaaagtcaattaGCTGAAACTTTACCACTTCAGACAGAAGTTTCTAAGCAAAACAGTGCCACTTACCTATTGGAGACCACTGTACAAGTGAACAAGCACTACAGTGCTGCTGTTCTTCTTAATGTCATTTCTGAAAATAGGCATACTAACCTAAATCATCCAGCCAACAGTGGCCGTGTTGAGAAACTGACCAATGATGAAGGCCTTGACGATAATGAAGGAACTGTGCATGGAGGAAGACCAGAGacactttaaaatattaaaatacaccTAAAATATTGGCCAACACAGTAAGTTAACTCAGTGCTAAAaagtaaaagataaaaataccaGTGTAAATAACAAGTACACTGTTATAAATGTAACACAAAAAAGTTTGAAGATCGAAACATTTTAAGCTTAGTCAGTCCATAAAGTGGCAGCTTAGTGTACAGTGGCATGCAAGTTTAGGCATCTCTGTTACTATGAACagttaaacatataaataaagtaaaaaatatagatCCCAGTCAGATTTCTCACAATATCAAAAAAACAACCTGCCCCTGAAATTATGTTTTCTAAATTAAATCATCTTAAAGTCTCAGCAGTGTTACTAAATTTGAGTtaaaaatttacttaattttggGACAAGTACATGGCTTCGACGACTCCTTCTCCAGATCATCCAGCCCTTTATATACCCCTACCTTTCAGCCTATCCAAAATCAAACATACTTCGCCCCCATCTGCACTCCATTTCCCGACAGACCACCAAAAAGCCAACAAGGACTCCTAGCCCACCCAAAACATAATATTGATAGTGCAGCAAGAATTGATGCAATTAAATGCCAGCAATTTCTGGAAACAATCATCACACCATATGTAAAAAGAAATCAAGATAAAAGAGTATTCCAAAGCAGAATAATGATCCCAAACACACATTAACGTCCACAATActtaaaacctttaaatataTAAGGTTGTACTGTGGCTGTCAAATTTCTCTGACCTAATTATCATAAAAAATCTGGTGATAGACATCAGAACAGCAGTGCGGCAAGATGGCCCACGAATCAATAAAAGCCTTCTGCAAGGGAAAATAGGTGAAAGTCCCTCAAACATGGACTAAAAATGCTTAGCTggcaacacaaaaaaatgtttaaaagctgtaaaGCTTGCACTTTATCTTCAGGcccatttcatttttttgtttctctttattgtaaaaaatgGAAAGAATGAAAAAGCTTTGCAATgaccaggggtgcccaaacttttgcatgccactgtatatTTCAGTCATGTTGCTGGTTAATACATTCAAACATTCATTAGACTCCTGCttatctgtttctgtttctctgcactaATTACTGTGAAGTAAAGACCCTctgtaaattacagttttgaaaGCACTTATTTTAACATGTCCCCAGTTTTAATGTACATTTATCTGATTTGAATATACTGCCTTATCTGAGATGATGAACACATTTAAATTTTTCACCATTTGCCAATATAAAACAGGTTTGTAAATGcacaagtaattaaaaaaaaggcccTCGACTGTAAAGAGTATGTGGACGACGGCTTGTAGCTTGACCAAGAGACCCATGTAGTGGTAAATGGTTTGTACAAGATGCTCTTTACGAGAATGTTCACTCTTGCCAGCAAACAGCTTTGAATTTGAAAAGATTAATATTGTTGTTCTGGTCACAGTATAGGTGCTATCATTGGATGAGCCCATTTTTTGGACAGCATTGTAAATATACTATCTGGACATTGCATTATAAGTCACAGGTTTGGTGCATTACTTTTATATTCTTGGTTTGTTACAATATCATGTAGTAAAAATAGCAACAGTGTTTTTAGGTTTGAGGTAAGTGTTTAGTTACTTTATTCAGTCCTATTTGTGTATGTGCCAGTCCGAAGAGTTTAGTAATTACGGTgtaatcttttttgttttttaaagaaaaaccaCTACcactttgtgtttgtttaataaatgtagGATTGATGAa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11585 CBX1, HP1B, SWI6; chromobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45973 lncRNA downstream 42177 3777900 ~ 3781741 (-) True G34166
TU45962 lncRNA downstream 94958 3728642 ~ 3728960 (-) True G34159
TU45895 lncRNA downstream 424805 3391629 ~ 3399113 (-) True G34101
XR_002649845.1 lncRNA downstream 634482 3107202 ~ 3189436 (-) True LOC111192350
TU45809 lncRNA downstream 738512 3060369 ~ 3085406 (-) True G34036
TU46051 lncRNA upstream 10674 3840003 ~ 3842727 (-) True G34218
XR_455620.2 lncRNA upstream 51253 3880582 ~ 3883412 (-) True LOC103038927
TU46069 lncRNA upstream 74005 3903334 ~ 3903569 (-) True G34230
TU46071 lncRNA upstream 80960 3910289 ~ 3910512 (-) True G34232
TU46077 lncRNA upstream 95113 3924442 ~ 3924669 (-) True G34238
XM_015608359.2 mRNA downstream 16900 3802912 ~ 3807018 (-) False LOC103042441
XM_007259159.3 mRNA downstream 16940 3802912 ~ 3806978 (-) True LOC103042441
XM_007259160.3 mRNA downstream 16942 3802912 ~ 3806976 (-) False LOC103042441
XM_007259163.3 mRNA downstream 34757 3783408 ~ 3789161 (-) False prr15l
XM_007259165.3 mRNA downstream 47733 3770639 ~ 3776185 (-) True mrpl10
XM_015608398.2 mRNA upstream 7294 3836623 ~ 3839557 (-) True ccdc189
XM_007259151.3 mRNA upstream 32245 3861574 ~ 3870176 (-) True LOC103039858
XM_015608330.2 mRNA upstream 54685 3884014 ~ 3893352 (-) False LOC103038619
XM_022668928.1 mRNA upstream 54943 3884272 ~ 3893361 (-) True LOC103038619
XM_022668927.1 mRNA upstream 55995 3885324 ~ 3893365 (-) False LOC103038619
TU45989 other downstream 34726 3783408 ~ 3789192 (-) False prr15l
TU45987 other downstream 34812 3783125 ~ 3789106 (-) False prr15l
TU46045 other upstream 7292 3836621 ~ 3883469 (-) True G34214
XR_002649848.1 other upstream 1428553 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 2078645 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 2106506 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2636039 6465368 ~ 6513701 (-) False LOC103026268

Expression Profile