RNA id: XM_015608359.2


Basic Information

Item Value
RNA id XM_015608359.2
length 2202
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC103042441
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3802912 ~ 3807018 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGAGGTTGGGCCTGCTCGGGCCACACTAATTATTTGTGTCGACGCCCTAAAGGCTTCTGAGTTCACGTTTCTGGCGAATCTAACTTCTCCGAGCTGCAGGTAGAAAGAAGTGCAGGGTAGCACGGAGACcccgggagagagagaggagcagaggGGGAATCCGTGCAGAAACGGGAGCCGCTGGCACTTTAATAAAGCGGTGCTGCGATCTGTTGTGGCGAGCCCGCGGAGCGTGGGATCACGTCCACGTCCTGTTGATCGCGGAGGATCTGCTGTGAGCTCTTTAAAGAGGAGATGGAGGCGAGCCTGTGCCACGTTACGCTACGGTGCATTCGCTCCTCCGGCGCGTGCCCCGTGATTTCTCCTCCGCGCAGCCGAGCGCTCCAACTAAAGTAGGAAAATCGAGAACAAGCATTTAACTATAGTTTTCTCCTCGGGAACCGAGCCTGTGCTGAGTGTGAAACACACGGCACGAGAAAACGAggctttttctgtgtttttttttacgattCGCCGAGGGAGCGTTGTTGTGCATCATGCAGAGGGGGCACAGTTTCTCTGAGCGCAAATAAAATAATGGGAGAGAAATGAGAAGGAAAACAAAAGCCAAGCGGATTCCCGACTACGAAAATGAAGCGGACGAGGAGGAAGAACAAAAAACGGACGAATTCCACCACGTTCTGCAGAAACGAAGAAAACAAATGTATCCTGCCAAAGAGCGAGCTGAGGGGAACCCATCACCAGCTGCAGCTCGCCAGAAGTTGGACATGAGGGCTTATGAGTTCGACTGCTCTCCTGCAGACTACAACTTCAGCAACACTCACTCCACTTCTGAGcAGGAAGCTGACTATTTGCAGTCATATTCGAAAATGGAGCTGATTGCCATGGTCCTATGCATgcagagagaaatggagagctTGAAAGAGCAACTTAGGTGCCTTACagCATGTGGAAAGCTGGCCAAAAACCTTGAGGCCCTGATCGAGAAGACCCAGATGTGGCCTAATGGGGATAGGAAGCCCTCTCTTGCCGTCTCCCCCAGCCCAGTAAGAGTGCCTGTGGATATGGATGCTTTGATGCCAACTATGCTGTGTGCCCCAACTGTTCTGAATGGGCAGTGGGTCAAGCAGGAGTCTGTGACACAGAAACCTAATGAGACCCCCCATGGGGACGAGCTCTTCTCAGAGtttatCACTCCTGAGCTTTTGGAGAGATGTAACACAGGAACCACTGCCCAGAAGTTGACCAATGATCTGCTCCGTGGACTTTATGAAAGAGACTGCCTGGCCTCTCACTCCATCTCTGGTGTGGTGTACAACAAGAGAGGAACTGTCCAATATTTCTTTCCTGGGAAGACTGACGCAGAGATTAAGGGCTACATCCGTCAGAAACTTCAAAATGAGGCAAAACGATTGAGGAAAAAGCCTTCACTCCCTGGCCCAGAATCTAGAGCTTTGAGTCTGCCTGGCCCAATATTGAATGCTCCTCACTTGGAATTGATTGGACAAAAGTCCATCGTTTGATTAGTAGTCAACAGTTTTGTGTCGTCTGATGAGATAACCTAATTCAGTGTTAAATATGGTCAGGAAATAAAATTCTTGACTCATACAAGATTGATGAGAGATGATGTATACATGATCCTTGCCAtcacacaaaaaacatgtatttccaAAATGAACAACTTTGCAGGAGAAGGTGGGGAAAACTGCTTAAATTTAAATGGACTTCCTGTTTGTCCGTTCGTAAAATCTTCACAGATTCATATTGTTAACAGGtcaaaaacttgaaaaatggagatacaaggtttttgtatGAGGGCGgctatttaaaattaaattaatctcATGTTATGTTTGGGTTGTCCTTGAGAATGTCACGATCACTTGCAATAGTTGTTTGGATACTGATCGTTGTGACAGTATTGATgtcaaaatgcaaataaaataatttaaattgaaGGTCTCCTAAGAGCACAGTCGATAGAATTAGAAATTATTAATGTGAGTCTGTAAACGTTTTCTTTTTGTAACGTTTTGTATTTAACAGATATGCAGTTGCTACACTGCATAACGTCAGCCGGTGTGgacatttattttcattgtattttaaatgtatttcttacTCTATTACGGTCCCTATGACAAACGTAGCTTTATGTATGTATTCTTTTGTTATTAAATCAAAATGGAAAGCAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45973 lncRNA downstream 21171 3777900 ~ 3781741 (-) True G34166
TU45962 lncRNA downstream 73952 3728642 ~ 3728960 (-) True G34159
TU45895 lncRNA downstream 403799 3391629 ~ 3399113 (-) True G34101
XR_002649845.1 lncRNA downstream 613476 3107202 ~ 3189436 (-) True LOC111192350
TU45809 lncRNA downstream 717506 3060369 ~ 3085406 (-) True G34036
TU46051 lncRNA upstream 32985 3840003 ~ 3842727 (-) True G34218
XR_455620.2 lncRNA upstream 73564 3880582 ~ 3883412 (-) True LOC103038927
TU46069 lncRNA upstream 96316 3903334 ~ 3903569 (-) True G34230
TU46071 lncRNA upstream 103271 3910289 ~ 3910512 (-) True G34232
TU46077 lncRNA upstream 117424 3924442 ~ 3924669 (-) True G34238
XM_007259163.3 mRNA downstream 13751 3783408 ~ 3789161 (-) False prr15l
XM_007259165.3 mRNA downstream 26727 3770639 ~ 3776185 (-) True mrpl10
XM_007259167.3 mRNA downstream 32420 3749171 ~ 3770492 (-) True LOC103044690
XM_007259172.3 mRNA downstream 247693 3545433 ~ 3555219 (-) True LOC103046317
XM_007259173.3 mRNA downstream 270523 3403947 ~ 3532389 (-) True myo1d
XM_022668923.1 mRNA upstream 16900 3823918 ~ 3829363 (-) False cbx1
XM_007259156.3 mRNA upstream 16900 3823918 ~ 3829329 (-) True cbx1
XM_015608398.2 mRNA upstream 29605 3836623 ~ 3839557 (-) True ccdc189
XM_007259151.3 mRNA upstream 54556 3861574 ~ 3870176 (-) True LOC103039858
XM_015608330.2 mRNA upstream 76996 3884014 ~ 3893352 (-) False LOC103038619
TU45985 other downstream 13720 3783125 ~ 3789192 (-) True prr15l
TU45989 other downstream 13720 3783408 ~ 3789192 (-) False prr15l
TU45987 other downstream 13806 3783125 ~ 3789106 (-) False prr15l
TU45986 other downstream 13806 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 13848 3783125 ~ 3789064 (-) False prr15l
TU46045 other upstream 29603 3836621 ~ 3883469 (-) True G34214
XR_002649848.1 other upstream 1450864 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 2100956 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 2128817 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2658350 6465368 ~ 6513701 (-) False LOC103026268

Expression Profile