RNA id: XM_007259167.3


Basic Information

Item Value
RNA id XM_007259167.3
length 7104
RNA type mRNA
GC content 0.41
exon number 23
gene id LOC103044690
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3749171 ~ 3770492 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTCTTCAACAGGTTAAGGTATTcaacagagcaggtattatttggatCGTGGATCATTATCAGCATTGCAGCGACACTGGCATGGTGCAGGTGTGCATGGGCGTGGTTGTGtaggaaaagtggacctgactacccagggcctgagtagggagaggggcttatgaaaatcctgatttttctgatgctacccacaggacacCGTTGACTGGATATCTCTGGTTGTTGAACTTTTGTCAGTCCATCAGTGAcacttaagtgtttaaaaactccagcagcactgctgtgatcCACTCACACTAGCACAACATACACTAacataccaccaccatgtcacgCAGTGTCACTTCAGTGATCAGAATGATTCACCAGCCAAATAAtccctgctctgtggtggttcctACAATTCCTACAATAGAAATACTGGCTCATTAACAAAATTCTAGGGCACAAGTTCTTTTAATGACCAGTAATGAAATGTTTAGTTAAAAAAGTACCTGAAATCAATAAAATCCAAATCACAGTTGCCAGTATTTAGGTTTGTCTGTGCTGCAGTGTCCATCAGCCTTTTCAAAGTCTTCCCGCCTGCACCGCTAATTCCTATAGCTCCTTAGTCACTAATGCGGATAATGGTTTGGCTGAACTGTGGTGAGAACTTCAGGTCCTGAAGATGTTAATTCCTCTCGCTGGTAGAAGACGCTCGAGGAGGTGTTAACAagaactgtgtttgtttttggatACTTTTTCGCAAATGGGCAAACGTAATGATCACTTACGTGAAAATCTTATTTCTGAAATATCACAGAGGTCAGTTGGACAGAGGAATCTCAGATATGTGATCGTGTGGCCCTGAACATCTAGGACAACATCCAGTTTGTCAATGTTCAGTCAAAGCGTGTAGAAGAAGAGTATATTTTCAGCATGGAGCCCTATGGATCCATGGTAGACCACAACCAGTTGCAAGCGAGTGGCCTTGACCGGACACCTTCTGGATGGCATAAGCCCACACACTCCAGGAGCAGCAGTACTGCATCTTCTCGCCACTCACGACAGCATGTAAAGGACTGGGAGATAATGGACGATCTGCAGGCAGAAATAGGCCCCAGTGTAGAGAACGTGCAGGATATGAGCCCTCCAGGCATTTGTGAAGGCTATCTGATGAAGAGGAGAATATGGCCTCTTAAAGGATGGCACAAGagatatTTTGTGTTGGACAAAGGGATTCTTAAATATTCAAGAAATCAACATGATAACTCTAAGGGGAAGCTAAGCGGGTCGATGGACGTCAGTCttgcagtgatgtcagtaaacAGAAAGGCAAGACGTATAGACCTAGATACAGGAGACAGTCTCTATCACATCAAGGCAAAGAGCCATGACCTCTTCTACATATGGGTGACCAAACTGAGCGCCCATCGGGTATTTAAAAAGAATGAGACGGCACATGCTCACAATGGCTTCCTGCAAGCTATGACTCATGGTGGCAACGCTGCTCAGAGAAATGGTGCCATGCAAGATGCGTCTCAGAGTCTGTCTGGTTCCTATGTGACTGATATGGCAGCTCAGAGCACAGACCTGCCCTCTGCTAACCCTGCTGTCAATCGGAAAGTGTCTGCCTGGCTCCAGCAGGCCCAGGACCCCGACAGCTGCACTCAAGAACTGAACCGCTGTCAGTTAGATTTGAGTGATCTGAACCGTCTGGTCCAGAAGCTGCACTGCTTGGAATCGGGTCAGGCTTTCAGCAATGGAGAGCTTCAGAGGATCATCAGCATGCAGAATCTTTCACTTGAgaaacccaagaagaaatgTGGCAAGATGTGGGGCCACTCTCGCACACTGTCTCGGGTTGAGGCTCTTGGAATGCCACTGCGTAGGATTACTAAATCGTTTTCATCCAGCCACTTGAGCGTTTCATCCCACCTGGGCACCTCTGTTCCCTCCATCCCTGATTATGTCTACTCCCAGCTTGCTCCCCCAGTCAACAACTCTCCTGAAACAAGAAAGCTGCACCAGGACATCTGTACAGTTTCTCAAAGAGTGCATGCCTCCCTGAGAGCAGTGCATGATGCTCTGTCTCAGGATCGCCATCGGCTGCAGGAGGCGTGGGCCAGTGGAGAACTCCGTCAGAACACTCCAGCTCAGATCAGCAGCCTGTGTTGCACACTGACTGAGTCGGAGTCTGGACGGCGTGCCCCTGGCCGTGCACCCTCAGTAGCAGACTCGGCGGCAGAGTATTTTGATGCATGTGATGACATTGGAGGAAGCTCCTCTGAAGCATCGGATGAGTCAGGTCTGAGTGATGCCTCCAGTAACTCAGAGCCTGATGAGGGTCATGCAACAGCAACACGGAAGTATCGCGCCAGTCTTTCCAAGGCGCATTCCAAGTCCAGGCGAGTCCCGCAGAACACCGGCCGCCGGACCACCTTGCCCGCAGTCTGCCCTGATAATAGCCATGTGGGCCTCATGGCTATCCTTTATAACAATATTGGCAAGGACTTGTCCCGTGTGTCCATGCCAGCAGCACTGAATGAGCCTATCAACCTGCTCCAGAGGCTATGTGAGGAGCTGGAGTACTCAGAGCTACTGGACATAGCCAACCGTACTGATGACCCCTACCAGAGGATGGTGTACATTGCTGCCTTTGCAATCTCTGGATATGCTACAGCTCAGTACCGTAACCGGTATAAACCCTTTAATCCAGTTTTGGGAGAGACGTATGAATGTGTAAGGGAGGACAGGGGCTTTCGCTTCATCAGCGAACAGGTTTGCCATCATCCACCCATCTCTGCTTGTCATGCAACATCTGATAACTTCTCCTTCTGGCAGGACCAGAGGTGGAAGAACAAATTCTGGGGAAAGTCTTTGGAGATAATGCCAGCTGGAATGGTGAATGTGACTCTATCCAAGTATGGAGACCACTATGAATGGAATAAAGTGGTGACATGCATCCATAACGTTCTCAGTCAGCAGAGATATCTAGAGCACTATGGGGAGGTCGTCATTCGCAACCTCAACAGCTCAGTGTGCACCTGTAAGATTACCTTTGTCAAGTCTCGCTACTGGGGCTCAGATACGAATAAAAATGAGGTTCAAGGTCAAGTACTTGACCAGAGTGGGAATGTTGTGCACCGATTTGGAGGATTCTGGCACGAAGGGATCTTCTGTGATACGCTGCCCAACCAATGTATCTGGAAGCCAAACCCTCAGCCTAAGGACTACATCCTGTACTATGGCTTTTCCAGCTTTGCAATTGAACTGAACGAGCTGACTCCTGATCTCAAACCTCTGCTGCCTCCCACAGACTCACGCTTGCGTCCAGACCAGAGGATGTTGGAGAACGGCCAGGTGGAGGAGTCAGACAAGAAGAAAGACGAAGTGGAGGAAATACAAAGAGAGCGGAGGAAAATTTTGGCCAAGAGAGGAGAAGAGCATATTCCTCGCTTCTTCAGGAAATCTATTGATGCAGCTGGCAGAGACGTATGGGTGACGAATGGAACTTACTGGAAAATCAGGGACAATCCTGGATTCGCCAACATTAAAAACTTGGAATTGTGGTGAAGCAGAAAgaggcacattttttttttgtgatttatatctaattttatcacattttctctctaATCTGGAAGGCCAAGTACCCACCCACTCATAAGGATCCCCTCTATCATTAGAAATGCCCAttagaagggtgaagactagcccATGTCTCCTCCAACTCATgtgaagttttatttttttaaacaagccaGCTCTCCGGTTCTTATGCATGAGCTAAAATacgcctgtgctgaccagcatCTTATTAGGAGTGATTGAGGGAGTGGACACCAATTACCCACCCCAAAGAGAACAAGGACgattctgctctctctctgactctggctgctgatgccaagcaaCATGACCTGGGATTCAAAGTGGAAATTCTTGGATTATAGTGACTGCAGCCCAGATTGTTCTTTATTATTGATAAAGCTGACGTGAATGTAAAGACAAAGCAACCTGTGGAGCACAGATGAACTGCCCGTAAGCCACCGAGCAAGAATAGTGCTGATATTTAGGAACCACGCTTTGCCCATTCTTCCTTTCTGTTCTAGCTGATCCTCTGGTGTTGTGAAATGTTATGTGTTTCTTCAAACACATGTGTCCCTGTACCACACATGGACTTTGTGAATCCATGGAACTGTGGTTGGAATAGTGTcctgtttgtgttttccatcgAGACAGTCCTGAAGAAATTGGAGAGCTGATGTTTTGCACATTATGAAATAACTGATCTTTGGGGGAAAAGCCCATACCTTCAACTCCCTCCCTCCTAACtaaactgtaaataatataaGTTTCTTGAGGAACTTTTAGGGGTTCTTAAATGGAAAACTGTGAACGTTTCTCTTTATGGTGTTTTGAAGAACATCCAGGAAACTTTTTTCTTCTAAAACCTTAAAGGGATTTCTTCTTTAAGGTTCAAATGAAAGAACTCCTAAACGTTTCTTAAAGAACtggtacttaaaaaaatatgatcttATGCAGAGCTTGATAGAAAGGAAGGAGCTTCCTGACACTCCATGAAATCGTCCTCCTTCAGTCTTCTCTCTGTTCTTTAGGAGGAGATTGACCTAGTGGCAAAAAACTGTCCCAGACCATGATCTCAGTTCTCTGCCCTCTTATAGTCATATATTTTActcttatttctctttctccatatttttttttccataatcaCATGTGGAAGGTGTGATTTGAACTCGCACAATGTATATTATATCTAGCTTCAGCCTTAAGTCTTATTCCTGATACAGATCAGTAGCCATTTATGTAGCAAAAAAAATTGGGTGGACTGAaacttttctacattttaaaaccTAATGAGATAAAGGATCTCCTCAAAAAAGGGATTTAAAAAGGGAATTCAACAGAtttgacaaaatatatgcatgattaaatataaacaaaataattttagagTGGTGTAGTGTGAAAATtgttcacagtggtggtgatggGGACTAGGCATTTCTTCTAAAAGCTTCTTGACAGAAAGGTTTAACATGAAATGGTTTGAAATATGCCTAAGACTTTCTTTAACAagacataatatataatttatatatattatagggtATTAAACAATTCCGATATATAAGTATACTGAAAGAAATGTCCAATTTGCAGCAATTGTTgtcaaataaagtaaattttcctCATGAGACATGACtaaaagtacataaaaaaaatattttgttgttaaGTTACAATAAGCTACCGGCAATTTTTATTTGTCAGTAACTTATTgtcatacattatacattatacattaacaGAGTGGCATTGTcaattaattttgtaataaatatataaaatatacagcacactaaacattttattttgtggtaaaataaatgtaaataaaagcgtGATCCAGTAtatctaaaataattttgacaatatgtttatagctaaagtgtacagtaaatatttaatttcagtaatatctttcttaaataaatgttaaatgacTGTGCTGCTGTCTACAGTGAAActattgtaaatgtattgaCTGACTAAAACTGCATACACAAATTGCaataaatgtatacaaataaaatacagtacatacaatTACATGACTAATacatatacagtttattatataCAGACATCACAGCTTCTGGCTCCTATCATCATCACTGTAAAGTTAGAATTCAAATGAGATTCTGGGAGTGCAAAGCACTGTTAAACACTAAACCTCTTTTAATGGCATTGTCTAGGAATGATGAATAAATTCCCATCCTTCCATCCTACAGTGCTACTGACCAGTCATGCCCACACCAGCCCGTCTGTGATAAGAAACCCTTTTTGTTCTGTTCTGAAAACACGTGGGGACGGGTCAGTTGAGGACTGAGTGTTCAAGGTGAAATGCATgcattcttatatatatatttcaatatttttatttggatataCTGTATGAAGCCCAAAGGAATTACTTACTAAAGATAATTGAGATGTGGTAATAACCTTTAGTATTGTCGCAATGTTGCATTTTTACACAATGAATTCATGCTAGACTCTCTGGCATGTGTAAGGACATTAGTTCTTTTTCAAAGTCACAGCTCACCCAGAGAGGCTTCCTCTAATAGGATTAGTTCTAATTCGGTCCTTCACACAGGAAGCACACAGACGGCACAGGGAGGAACAGCATTATACTGAATGCTGAACATGTGAACTGTTCTTCTTAGGATTAGCACACTTTTTAtatgtgttattaaataatactttaaatatattaacttAAATGTTCATGAAGtatggtattatattcaaatggAAAGTAAATATGAATAAACTGTCATAACTGTTCGACTGTATGTAAAGTTTTTCAAGGTTTAAAAATCTGAATAGTTGGATTAGAACTAACACATACCTATTCATTAAAACGGAAACACACagaacatataaaatacaatgacAGTAAAGCAATATTGcatatttaagcatttattacatttagaacaaattaaatacagtctgtacatttatttgcattaatatTGGAGGGGTCTTCTATGTTTGAGCCTCAGTGGGCTTGGCCTTGACCAGATAATGAAGGATATAAATCCTCTAAAATAATGTTCTATTCTCTCAGTTTAACTGAGCTGAAGTCCAAGTTCAGCTCCAAAGTTCAAATGGTTCCAAAGGAagaacatacagtataaatatcAACTAGAAACAACCTGATACCTGATACCTCTGAGAATCGATCCATTCTCCTTTAAAAGGAATTGTGGGGAAGGCTTGAGGGAAGATGTCCTCACACATGATTCCTAAATAAGGAATTAAATGTCCACTAGGGGTCACCTAAACATAGATTGTCACATCCTAACAATATAATACAGCACCTctatgtgtgcagtgtgtaccAAATATTGTAACAAAGATTCAAAAgcaagaataataataataataaaaaagttcaaTAAATTGATAAATCTCTTAAATTAATATTGACTTGTTTTAATTGCACTTGAAATTAGAAATGGTTCACCAACATTAATTGTCAGTTCAGGTCATAGCCGTACACTGTTTGTACAGTATTAagtagaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45962 lncRNA downstream 20211 3728642 ~ 3728960 (-) True G34159
TU45895 lncRNA downstream 350058 3391629 ~ 3399113 (-) True G34101
XR_002649845.1 lncRNA downstream 559735 3107202 ~ 3189436 (-) True LOC111192350
TU45809 lncRNA downstream 663765 3060369 ~ 3085406 (-) True G34036
TU45696 lncRNA downstream 1145982 2574387 ~ 2603189 (-) True G33944
TU45973 lncRNA upstream 7408 3777900 ~ 3781741 (-) True G34166
TU46051 lncRNA upstream 69511 3840003 ~ 3842727 (-) True G34218
XR_455620.2 lncRNA upstream 110090 3880582 ~ 3883412 (-) True LOC103038927
TU46069 lncRNA upstream 132842 3903334 ~ 3903569 (-) True G34230
TU46071 lncRNA upstream 139797 3910289 ~ 3910512 (-) True G34232
XM_007259172.3 mRNA downstream 193952 3545433 ~ 3555219 (-) True LOC103046317
XM_007259173.3 mRNA downstream 216782 3403947 ~ 3532389 (-) True myo1d
XM_007259176.3 mRNA downstream 358593 3382775 ~ 3390578 (-) True LOC103047433
XM_007259177.3 mRNA downstream 368572 3340612 ~ 3380599 (-) True ogfod3
XM_022669429.1 mRNA downstream 526173 3221347 ~ 3222998 (-) True LOC111192418
XM_007259165.3 mRNA upstream 147 3770639 ~ 3776185 (-) True mrpl10
XM_007259163.3 mRNA upstream 12916 3783408 ~ 3789161 (-) False prr15l
XM_015608359.2 mRNA upstream 32420 3802912 ~ 3807018 (-) False LOC103042441
XM_007259159.3 mRNA upstream 32420 3802912 ~ 3806978 (-) True LOC103042441
XM_007259160.3 mRNA upstream 32420 3802912 ~ 3806976 (-) False LOC103042441
TU45820 other downstream 554794 3181168 ~ 3194377 (-) True G34046
TU45650 other downstream 1439842 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 1553076 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 1572112 2169023 ~ 2177059 (-) True G33823
TU45451 other downstream 1706897 2036125 ~ 2042274 (-) False LOC103022010
TU45985 other upstream 12633 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 12633 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 12633 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 12916 3783408 ~ 3789064 (-) False prr15l
TU45986 other upstream 12916 3783408 ~ 3789106 (-) False prr15l

Expression Profile