RNA id: XM_007259172.3


Basic Information

Item Value
RNA id XM_007259172.3
length 3691
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC103046317
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3545433 ~ 3555219 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAACATTCTGTCCTATAGATACTGCTGGAGTTGCTGAGAGGCAACCAAGCCTTTACCGAGCCTTTCATTCAGTATTTGATTTCAGTCTCACGATTCAGAGATTCAGAATGAAGTTCGTTCGCTTTATTATGAAGAGTTCTGCTTTGGCCAACGTGCCTAAACACATCGAGCACTTCTCCAAATTCTCACCTTCTCCTCTGTCTATGAAGCAGTTTCTGGATTTCGGGTCCACAAATGCATGTGAAAAAACGTCATTTGTTTTCCTGAGGCAAGAGCTCCCTGTCCGTCTGTCCAACATCATGAAGGAGATCAACTTGCTCCCCGACAGACTGAGGACAACCCCCTCTGTTCAGATGGTGCAGAGCTGGTATGTCCAGAGTCTAATGGAGCTCCTCGAGTTCTTGGAGAAAAGTCCCGAAGATCACAGTGTTCTAGCAGATTTTGTTGAAACACTGGTGAATATCAGAAACCGACACAACGATGTTGTTCCCACCATGGCCCAAGGTGTGATCGAGTACAAAGAAGTATTTGGTCAAGATCCTCTCACCAATCAGAACATACAGTATTTCTTGGACCGCTTTTACATGAGCAGGATATCCATCCGCATGCTGATCAACCAGcacaCTCTGGTCTTTGATGGTGCCACAAATCCTGTTCATCCAAACACCATTGGCAGTATTGACCCTCATTGCCAAGTCACAGAAGTTGTCAAAGATGCCTACGAGAGTGCCAAAATGCTGTGTGACCAGTACTACCTCAGCTCTCCTGACCTGCTGCTGCAAGAGCTcaacaTTAACAACAGAAACCAGCCGATTAGCATAGTCTATGTGCCTTCCCACCTCTACCATATGCTGTTTGAGTTATTCAAGAATGCAATGAGGGCAACTATTGAAAACCATGGTGAAGGCAGCAATCTTCCACCTATTGAAGTGATGGTGGCCATTGGAGGAGAGGACCTTTCTGTCAAGaTGAGTGACAGAGGCGGTGGCGTGCCTTTCAGAAAGATGGAGAATCTTTTCAGCTACATGTACTCCACAGCCCCGACTCCTCAGCTTGGCGACAATCACGGAGCACCTCTGGCTGGCTTTGGTTACGGGCTGCCTATCTCTCGCCTCTATGCAAAGTATTTCCAGGGAGACCTCCAGCTCTACTCTATGGAAGGCTATGGTACAGATGCTGTCATTCATTTAAAGgcGTTATCCACCGACTCAGTAGAGAGACTCCCAGTGTACAACAAGACTGCCCTGCGGAACTACACCGTGAGCCAGGGGGCTGACGACTGGTGCGTGCCCAGCAAAGAGCCGCTGGACCTGGCTGTGTTCCGACTGGCCAAGTGAAGAGCCATCAGCAGCCTGGAGCCTTCTGGATGAACTAAGAAGAATAGAAGTCCTGGAGCTGGCACTCTGGCACTGGGACCAGTGAGAGTTACGCAGTGCTCTTGTGAAGCCGGACGCTCACTGTGAAGCCTTGTAGCTCTAGTTATCGCATGCAATGGCTTTTTTTCCTCCACACCATAATCAACTCATGAAGTTtttcctttactttttttttttaggttttgttttggtttgagaATTGAGGAAACTACCTTCAGTATCACAGTGTTACCTGTAGACCAAGCATTCAGGAGTGTGAGAAAGCCAAATGTGACCACTTGAAGCTCTTTAAGCTCCGGTAGTGCGTTACGAAAGGGCCAGATGTGCAGAGGTTAGTGTGAGGAAGAGCCTGACTGAGCTGCTAACTTTGTTAGACAGCAGATGGAGAGCAGCGGGCCCTTAAGGGCAGGAACCAGAGTCAGTATTATTATAGGAGGTCCATGTGCAAAACAGCTTTGCGACAGTATGGAAAGAAAGGGACGCAAAGATAGAATCGGAGATTTATATGAAGAAAAGCCCACCAGAAGaatacaagagagagaaagggagagggcACGTGTAATAGCAGATTGTGGCAGCATCATAGCTGTGATTTGGTCATTTGTAAGGAGTTCACAGCTAAGTTTTGCAATAGACGATGCAAatgctagtttaaatgtgtgtttttcaattttactaaaTTCTTCCTCCATGAAAAGTAGTTCCAGCAGGTTAAGATAAAGCAAACAttgcttttgttgttgttgttagtaATTAATAATGTTGACTAAGCAATTAGTGTCAAATGATTCACCTTCGGTTGGGAAAAAGCTCAAAACGTGCTGTTTTTGGATGAAGCAACATAGCTAGATCACTTTTTTTAGTGATTGAAATTGGGTGGTCAGATTAAGCTATTCTTTAATAATCCAGAATTTGATTTACCTTGGATGTCGAATGTCAGAGTTAAACAGGGGCGTTAAGCATGAAAAAAATTAGCTAGCAAATTATCATTGTTAGCATTGGACACATTATTATGTAGACAGTGGACAGTTGGGGAGTGCTGTGTGTACCACTGATTTATTAATGCAATACTAGATAGAAGTGCTAATATTCTGTACAATACTactacatttacatatattagttGACGTGCTGtacagccatcttggattctaagCTCCTGGGTTGGTGAGGATCTCCCGACCTTCCAGAGTAGCATTTCTGTCTTGTAGGAGAGTTCCAGTTAAAGTTACTCCTACATGGAACAAGGAGGTTTCATCATTCACAGTAGAAGCTGTGAAAGACTGTGTATGTGTACGACTATATGAAGCAAAATCGATGTTGGTCCATGTGTGTTAAGACGCTATTAACCTTGGTTTTAGGTCACGTTCTAGTCATGTTCAAGGGAACTGTATCCGTTTCATCCTCTCCACACTCTGTCGGAGTCACAAATAGATCAGCTATCTATAACCAGTGCTTAGAAGAAAAGAGGACCATATTCAGAGGCCAGATCAGAGCACCCTCCTTGGGTTCATGTGAGGTGATGGTGTTATGTTGTCCTATACAAGGGCATTGGCGTTGACAGTGTTCTCATACTGAAAAATCAGATAAGTAAGAAGTATTGAGTGAAAATGATATTGTGTCTGGAACAACCCTCAGTGTAAAAATCAGGAGTGGTGTTCCACTACACGTTGTTGCCAAGTCAGCCAGGCCATCCCTGGCGTATTGCTCTGTTGAAGGGGATTTGAATGTGGTAATTCATTATCCGTAACCTCATTACTTTCATGACTGAAAACACTTCAGGCATTTACAGTTTGATCTTTTTCAAAACCGCTGTTTCTTGCTTGTGAGTTTATTCTTCCATATTCTGTATAATGTTCTTGCTCAGCAAGAATGTAAATATGCAGCACGCCCATCTTTAGCCTTTTTCTCAAGCGTTTGGATGGGTGTTAGAAGGCCTTAAGGTTTCGTAAGCTTTCAGCAGCCTTTTATTGTTCAGCTTGCAATGATTCAATTTATGtattaaatccattaaaataaCATGGATTTTGTTTCCATTGTTTAAATTCTGTGCCTCTTATTTCAGAAAAGAACCACATACACTGAATGTACTGTTCAACATATACCTTGCAAGCCTTTAAGGaccatattttgtgtgtgtatttggatttgatgtgtgttttagatttttttttttttttttactaaactttTAACTCCTTAATGACTGAAAGAGAGTTAATATTTTGGGAATAAAATCTTTCCATATTTTCCATTGTATATGTAATGGATGTGCATATAATGGAAATAAACATGACAtttcattaaatataa

Function

GO: NA

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45895 lncRNA downstream 146320 3391629 ~ 3399113 (-) True G34101
XR_002649845.1 lncRNA downstream 355997 3107202 ~ 3189436 (-) True LOC111192350
TU45809 lncRNA downstream 460027 3060369 ~ 3085406 (-) True G34036
TU45696 lncRNA downstream 942244 2574387 ~ 2603189 (-) True G33944
TU45962 lncRNA upstream 173423 3728642 ~ 3728960 (-) True G34159
TU45973 lncRNA upstream 222681 3777900 ~ 3781741 (-) True G34166
TU46051 lncRNA upstream 284784 3840003 ~ 3842727 (-) True G34218
XR_455620.2 lncRNA upstream 325363 3880582 ~ 3883412 (-) True LOC103038927
TU46069 lncRNA upstream 348115 3903334 ~ 3903569 (-) True G34230
XM_007259173.3 mRNA downstream 13044 3403947 ~ 3532389 (-) True myo1d
XM_007259176.3 mRNA downstream 154855 3382775 ~ 3390578 (-) True LOC103047433
XM_007259177.3 mRNA downstream 164834 3340612 ~ 3380599 (-) True ogfod3
XM_022669429.1 mRNA downstream 322435 3221347 ~ 3222998 (-) True LOC111192418
XM_007259140.3 mRNA downstream 907682 2624938 ~ 2637751 (-) True dhx8
XM_007259167.3 mRNA upstream 193952 3749171 ~ 3770492 (-) True LOC103044690
XM_007259165.3 mRNA upstream 215420 3770639 ~ 3776185 (-) True mrpl10
XM_007259163.3 mRNA upstream 228189 3783408 ~ 3789161 (-) False prr15l
XM_015608359.2 mRNA upstream 247693 3802912 ~ 3807018 (-) False LOC103042441
XM_007259159.3 mRNA upstream 247693 3802912 ~ 3806978 (-) True LOC103042441
TU45820 other downstream 351056 3181168 ~ 3194377 (-) True G34046
TU45650 other downstream 1236104 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 1349338 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 1368374 2169023 ~ 2177059 (-) True G33823
TU45451 other downstream 1503159 2036125 ~ 2042274 (-) False LOC103022010
TU45985 other upstream 227906 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 227906 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 227906 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 228189 3783408 ~ 3789064 (-) False prr15l
TU45986 other upstream 228189 3783408 ~ 3789106 (-) False prr15l

Expression Profile