RNA id: XM_007259176.3


Basic Information

Item Value
RNA id XM_007259176.3
length 2229
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC103047433
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3382775 ~ 3390578 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGGGTGGTTGTGGGTCTGTAGGTTTGAATAGGGAAGATGGCAGCCGCGGCAGTGGTGGAGTTTCAGAGAGCTCAATCTCTCATCAGTACGGACCGGGACGCCTCTATCGATATTCTACACTCGATAGTGAGGCGGGATGTTCAGCAGGATGATGAAGAAGCGGTGCGCGTCAAAGAACAGAGCATCCTGGAACTTGGCACACTGTTGGCCAAGACGGGGCAAGCAGCAGAGCTTGGAGGGCTCCTGAAGTTTGTCAGGCCTTTCCTGATCTCCATAAGCAAGGCCAAGGCAGCCCGACTGGTGCGTTCTCTGCTGGATCTCTTTTTGGATATGGAAGCAGCCACGGGCCAGGAGGTAGAGCTGTGTCTGGAGTGCATTGAGTGGGCCAAAGCTGAGAAGAGGACGTTTCTCAGACAGGCATTGGAGgcTCGTTTGATCTCACTGTATTTTGACACCAAGAGGTTCCAGGAGGCCTTGCAGTTGGGTTCCCAGTTACTGCAAGAGTTGAAGAAGATGGATGACAAAGCTTTACTTGTGGAGGTCCAACTGCTTGAGAGTAAAACCTATCATGCACTCAGCAACTTGCCTAAGGCCAGGGCTGCCCTTACCTCTGCCAGGACCACAGCCAATGCCATCTACTGTCCTCCCAAGCTTCAGGCAGCATTGGACATGCAGTCAGGCATTATCCATGCAGCTGAAGAGAAGGACTGGAAGACAGCCTATTCTTACTTCTTTGAGGCATTTGAGGGCTATGACTCCATTGACAGCCCCAGGGCCATCACTGCCCTGAAATACATGCTCCTCTGCAAGATCATGCTCAACTTGCCTGAAGAAGTACAAGCCTTGATCAGTGGCAAACTGGCCTTACGATATGCTGGGAGACAGACGGATGCACTGAAGTGTGTAGCACAAGCAAGCAAGAACAGGTCATTAGCAGACTTCGAAAAGGCGCTGACTGAGTACACAAAAGAACTGAGGGATGACCCAATCATCAACACACACTTGGCAAAGCTCTATGACAACCTGCTGGAGCAGAACCTAATCCGTGTCATTGAGCCCTTCTCTAGAGTACAGATAACCCACATATCAGGGCTCATCAAACTGTCAAAGGGTGATGTTGAGAGAAAATTGTCACAAATGATCCTGGACAAGAAGTTCCATGGCATTCTTGACCAAGGTGAGGGAGTCCTGATCATCTTTGAGGAGCCTCCTGTAGACAAGACTTACGAGGCGGCTCTCGAAACCATACAGAACATGAGCAAAGTTGTGGATTCACTGTACAACAAAGCTAAGAAGTTGACATAGAACAAACGCAAAAGGATTTTGCTCTGCAGAGTggatgtgtgtgcgtgtgtgtgagtgtatgtctGCATGCGTGTGTGGCCAACATGTGGAGCCTTTTTTGTCAAGGCGAGAAGGGACAATAGAGTAAGACTCACAAAATTACAACGGATTCACTTCGCTCCCCAACCGAGAGTTTTTAACTCCTCATTCAATGGACAATTTCatccttctcttctcctctttatTTTTGATCTTTCATTTCTCCCCCCCTCAGTGTATCTGTCATCGGCCAGTATGGCCATCAGGGAATATTGTACAACTACAATAAAATCTTAAAGTCATCACATAGAAATCTATAACTCTTTTTACAGATCGAGTAACAACCTCCAGTGGTGCAATACTGCTTCAACTCCCTGTTCTTTTGGGGTCGCGAGGAAATGTGGATAACTGTGATTGTCTCCATTAGTTCTAGTCTCATGGAAGCACATTTATTCTGTCTGCAGTAAAAGTAGGATGTGCCAGATCCAGGCATGTTAAGGCTATTCAAATGGTTCTGTAGCGAGCACTGTTGCCAGCAATCAGACCAATCATGGTTATTTTTCCAATGTTTTTTAAGTTCAAATGATTTGAGTTTGATGTACAGTTACTCGGTATACTCTTGATTATACACATTGCAGTTCATTGTCTTTAACTCTAAATATGTTTGTTGTATTAAACTTCCCTTCTTCTTTCAAGGTATTCATTAATAACTTcttttttaactattaaaatgCTAATGTTTAACTGCAGTATGGataaatttaatttctttagTTGGACTATATATGCATTTTAGATTTCTAGCAAAGAACACAAGTTGTAAATTATAGCCGgtgtggatttaaaaaaaatttttgtcAATCATCTTTTTCATGTAATCAAAAATACAGATTCCTTTTTCTGA

Function

GO:

id name namespace
GO:0048863 stem cell differentiation biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649845.1 lncRNA downstream 193339 3107202 ~ 3189436 (-) True LOC111192350
TU45809 lncRNA downstream 297369 3060369 ~ 3085406 (-) True G34036
TU45696 lncRNA downstream 779586 2574387 ~ 2603189 (-) True G33944
TU45697 lncRNA downstream 779586 2575033 ~ 2603189 (-) False G33944
TU45689 lncRNA downstream 838664 2515287 ~ 2544111 (-) True G33939
TU45895 lncRNA upstream 1051 3391629 ~ 3399113 (-) True G34101
TU45962 lncRNA upstream 338064 3728642 ~ 3728960 (-) True G34159
TU45973 lncRNA upstream 387322 3777900 ~ 3781741 (-) True G34166
TU46051 lncRNA upstream 449425 3840003 ~ 3842727 (-) True G34218
XR_455620.2 lncRNA upstream 490004 3880582 ~ 3883412 (-) True LOC103038927
XM_007259177.3 mRNA downstream 2176 3340612 ~ 3380599 (-) True ogfod3
XM_022669429.1 mRNA downstream 159777 3221347 ~ 3222998 (-) True LOC111192418
XM_007259140.3 mRNA downstream 745024 2624938 ~ 2637751 (-) True dhx8
XM_022668916.1 mRNA downstream 1099791 2276757 ~ 2282984 (-) False psme3
XM_007259128.3 mRNA downstream 1101517 2276757 ~ 2281258 (-) True psme3
XM_007259173.3 mRNA upstream 13369 3403947 ~ 3532389 (-) True myo1d
XM_007259172.3 mRNA upstream 154855 3545433 ~ 3555219 (-) True LOC103046317
XM_007259167.3 mRNA upstream 358593 3749171 ~ 3770492 (-) True LOC103044690
XM_007259165.3 mRNA upstream 380061 3770639 ~ 3776185 (-) True mrpl10
XM_007259163.3 mRNA upstream 392830 3783408 ~ 3789161 (-) False prr15l
TU45820 other downstream 188398 3181168 ~ 3194377 (-) True G34046
TU45650 other downstream 1073446 2303262 ~ 2309329 (-) True G33904
TU45557 other downstream 1186680 2194757 ~ 2196095 (-) True G33836
TU45542 other downstream 1205716 2169023 ~ 2177059 (-) True G33823
TU45451 other downstream 1340501 2036125 ~ 2042274 (-) False LOC103022010
TU45985 other upstream 392547 3783125 ~ 3789192 (-) True prr15l
TU45987 other upstream 392547 3783125 ~ 3789106 (-) False prr15l
TU45988 other upstream 392547 3783125 ~ 3789064 (-) False prr15l
TU45984 other upstream 392830 3783408 ~ 3789064 (-) False prr15l
TU45986 other upstream 392830 3783408 ~ 3789106 (-) False prr15l

Expression Profile