RNA id: XM_007259178.3


Basic Information

Item Value
RNA id XM_007259178.3
length 1763
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC103021465
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4148188 ~ 4161856 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagaacaagaggAGCAAAGAGAATtcaggaaaacagagagaagaagaagaaagacaaAGCATCCACACAAGGGCACACTTGTGAAGAAcaaaacagagcaaaaaaaagagagagaaagggagagagagagagactgacaaACATCCAGAAGTAAGGAGGGGCAAGACCGGCAGTAAGTATGCAGCATTTAAGATACACATATTTACTCTGCATTAAACAGAGCACACGCTGGGCTTCCCTCACTTTCTGAAGACCACCAACAGGAGAAAGATCCACtgaggaggaaaaaagaaagtcGCCTGCAGGAGAACGAAACAGCCACCTGAGCTGAGAAGCACTTAGAGAAGCCTACCTGCTGCTCCGACCGATAACCAGCCATCAAGATGCTGCAGCAGATTCTCCAAGATATGTACATCGAGCCTGATCTGCTGGGAGAGCTGAACGAGGAGCAGAAGCAGATTCTGTTCTACAAGATCCGTGAGGAACAGGTGCGCCGCTGGAACGAGAGGGAGAGCAGAGATCCCATCCCAAACATTCGCAGGAGAAGCGGTCAGCGAGGGATCCGTTGGCTCCTGGGCTCAGATGCTgaggtgtgggtgtgggtgatGGGGGAGGCCCCCGGAGACAAGCCATATGAGGAGATTGTGGAGGAGCTGATGGAGGAGAGAGCCAGGAAGCAGGCCCAGAGAGAAGCTCAGGAGCTCCGGCGTGTGAAGGAAGCAGAGATTGAAAAGAAGTTCCGAGATGCCATGGCGAAGGAGAAGGCTCGCTTTGTGGCAGAGAAATGGAGGGAGGAGACAGATGACAGAAAGGCAGCCAAgcaagaggaggaagaggaggatcgCATACGAGAGGAGCTGAAGAAATGTGAGGAAGAAGAGcggcagagaggagaggaggaaatCCGGCAAACGGAAGAGAGGCGAGCGAAGGAGCTGTACATCTCTCTGAAGCAGGAGGAGAAGAGGGGCGACCGGGATGACAAAGAGTGGCAGGAACAATTGCAGCGCTCCAAAGCGGCCGACGAGGAGATGAAGTGCAAAGCTCGGCGTGCCAGAGATGAGTACAAACGCCAGTCCCTGAGAGCGATTGAGAAGGGCCTGGTGGCCGGCCTCAGCGGACTCTTCCAGAAGACCCATCTGAATGGCTCGAGTCAGAACCGGCGCCACAGCGGCGTCATCGAGCAGTCTGCCGCTCTGACTGAGGCCAGCCAATCGCCGGCCTCTACAGGAAGTGCAGCCGCTCCAGCCCATAACCGCCGCAGACAGAACCGCAGATACAGCAGCCCTGTTACACAGTCCATAACGGAGGGTCCAGTGTGGATTCGTCCAGCCAGGCCAACCAGTCGTGAATCCATCCTCCGCTGGTTTAAGGAGGAGCAGAGGCCCAGAAGGGCTGGATACGAGCGGATTAGCAACACTATCGCTCCCTGGTTCCATGGTATAATTTCACGGCAGGAATCAGAGGCTCTGCTGATGAACGCGTCAGAAGGCTCTTTCCTTGtaagagtgagcgagagaatTTGGGGGTACACCCTGTCCTACCGCACAGCCTCCGGCTTCAAACATTTCCTCATCGACGCCTCAGGCGATTACTACAGCTTCCTGGGGGTGGACCAGAACCGCCATGCCACGCTAGCTGACCTCATCGACTTCCACAAGGAGGAAGTGATAACCACATCTGGAGGAGAGCTGCTGCAGGAATCGTGCAGGCTGAAGGGCTCCAGTCCAGATTATGGGGGGCTTTTTCAGTGAGGCCTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46162 lncRNA downstream 12901 4133286 ~ 4135287 (-) True G34300
TU46159 lncRNA downstream 23367 4112381 ~ 4124821 (-) True G34298
TU46160 lncRNA downstream 23367 4114892 ~ 4124821 (-) False G34298
TU46158 lncRNA downstream 23367 4117354 ~ 4124821 (-) False G34298
TU46115 lncRNA downstream 144386 4002924 ~ 4003802 (-) True G34265
TU46182 lncRNA upstream 9197 4171053 ~ 4177653 (-) True G34311
TU46218 lncRNA upstream 300021 4461877 ~ 4509252 (-) True G34342
TU46259 lncRNA upstream 424589 4586445 ~ 4586858 (-) True G34381
TU46263 lncRNA upstream 465826 4627682 ~ 4628175 (-) True G34385
TU46315 lncRNA upstream 611957 4773813 ~ 4774992 (-) True G34429
XM_007259143.3 mRNA downstream 50233 4088103 ~ 4097955 (-) True LOC103036928
XM_022668927.1 mRNA downstream 254823 3885324 ~ 3893365 (-) False LOC103038619
XM_022668926.1 mRNA downstream 254826 3885324 ~ 3893362 (-) False LOC103038619
XM_022668928.1 mRNA downstream 254827 3884272 ~ 3893361 (-) True LOC103038619
XM_022668925.1 mRNA downstream 254827 3885324 ~ 3893361 (-) False LOC103038619
XM_022668932.1 mRNA upstream 57611 4219467 ~ 4440792 (-) True LOC103044368
XM_022668933.1 mRNA upstream 57611 4219467 ~ 4440791 (-) False LOC103044368
XM_007259180.3 mRNA upstream 430178 4592034 ~ 4703993 (-) True atrnl1
XM_015608360.2 mRNA upstream 468386 4630242 ~ 4703993 (-) False atrnl1
XM_007259183.3 mRNA upstream 549244 4711100 ~ 4791734 (-) False LOC103022618
TU46045 other downstream 264719 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 358996 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 359082 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 359124 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 1096026 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 1746118 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 1773979 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 2303512 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 2375165 6537021 ~ 6541364 (-) True G34953

Expression Profile