RNA id: XM_007259180.3


Basic Information

Item Value
RNA id XM_007259180.3
length 7136
RNA type mRNA
GC content 0.47
exon number 29
gene id atrnl1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4592034 ~ 4703993 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAGTTAGCCATATAGCTTTAACTAGCTAGCATTAACTAACGGTAGGCTATTTATTCCCTTGTTTCAATAGATACATAGAAAGTAATATAGTTAGCTTCATAAACccacctagctagctagctaacaacaaGCACTGCAAGCCATCAGTTATCAAAAAACAGAGGGGATGATAACGTTGCCCTGCGCTTTATTTACAATATGATTTCTTGACacaaatgtcaatattttgcTACTACCTAAAATATTCAGCTCCAGTTTAAGGACGTAAAGGAGTTAAAGCAGGACTCCGGTTTCTGTtcaagctaaactaagctaagctggCTGGCTATGTCATTCTCGGAGTATCCATAATCTTCATGGAGTGGATATCCCCCTCCTGCTAATTGAAACAATCTGGGCAGTTTCACTAAGGATCCAAGCACCAGAGAAGCACACCACCGGAGAGCAAGGCCCTCGGAGTAAACACGCAGTAAAAATGGATGCTGCCAAAATGTTCAGGACTGAACTGTTTGCCTTTAGACGACGACAGGACGCTCTCACCTGCTTCAGACTGCAGGGTATGAACACATATTTACTGCTCTGTGCAATGTTCTCCCTGGTGCTCCTCACGGATGCCTCTCCCTCTAAAACCTGTGAGAAGAACTGTCTCTCTGGGAAATGTGTCAACGGATCGTGCGTCTGTGACCGAGGATGGGTTGGGGACCAGTGTCAACACTGTCAGGGAAGATTCAAgttGACCGAGCCTTCGGGGTACCTAACAGATGGCCCCATCAACTACAAGTACAAAACCAAGTGCACCTGGCTGATTGAGGGCTACCCAAATGCTGTCCTGAGGTTACGCTTTAACCATTTTGCAACAGAATGTAGCTGGGATCACATGTATGTCTACGACGGAGACTCCATTTATGCTCCTTTAGTAGCGGTGTTCAGTGGTCTTATTGTACCAGAGGTTCCAGGGAATGAGACAGTACCTGAAGTGGAGACCAACTCTGGCTATGCACTCCTACACTTTTTCAGTGATGCAGCCTACAATCTGACTGGATTTGACATTTTTTACTCGATAAACTCATGCCCAAATAACTGCTCAGGCCATGGAAAGTGCACGACTTCCAACTCCATAGCGAGCCGTGTGTACTGTGAGTGTGATAAATACTGGAAGGGCGAGGCCTGCGACATCCCTTACTGCAGAAACAACTGTGGCAGTCCGGACCACGGCTACTGCGACCTCACTGgagaaaagctgtgtgtgtgcaatgaCAGCTGGCAAGGTCCGGATTGCTCTCTAACAGTGCCCTCTACCGAGTCATACTGGGTCATGCCTACCGTCAAGCCGTTCGGGACATCACTAGGCAGGGCATCCCATAAGGCAGTGGTTCAGGAGAAGGTTATGTGGGTTGTGGGCGGCTACACGTTTAACTATAGCAACTTCCAGATGATTCTAAATTATAATCTGGATACTGGCACGTGGAACACTGTGGCCAGCAGTAGTGGGCCTCTGTCGAGATATGgtcactccctcacactctATCAGGATGATCTCTACATGTTTGGGGGAAAGCTTGAAATGGGCTCTGGTAATGTCACTGATGAGTTGTGGGTGTTCAACATACCAAGCAAGTCGTGGTCTCTGAGAACGCCCAGCACTCCCGCTCATGGGCAGGTCTATGCTGTGGAGGGCCATTCAGCACACATAGCTGAGCTGGACACTGGCGATGTGGTGATGGTTGTCATCTTCGGCTATTCGTCCATTTACAGCTATATCAGCAACGTGCAGGAGTACAACATCAGAACAAACACATGGCTCGTTCCAGAGACAAAAGGAGCCACAGTTCAGGGGGGCTATGGTCACAGCAGTGTGTATGACAGTGGCAGTAAGAGTGTGTATGTCCACGGTGGCTACAAGTCCCTGCCTGCTAACAAGTATAGCCTTGTGGATGACCTGTACCGTTACGAGGTACACACTCGCATATGgactaTTCTAAAGGAGAGTGGTTCTCCGCGGTACCTTCACTCAGCTGTGCTGCTGGGAGGCACTCTGCTGATCTTTGGAGGAAACACTCATAATGATACATCGCTTAGCAATGGAGCAAAGTGCTTCTCTGCTGACTTCCTGGCTTATGACATTGCATGTGACGAATGGAAGGTTCTCCCCAGACCAAACCTGCACAGAGATGTTAATCGCTTTGGACATACTGCTGTCACCAGTAATGGGTCCATGTACGTGTTTGGTGGTTTCTCCAGTGTGCTACTGAATGACGTACTGATCTATAGGCCGCCCAGCTGTGAGGCGTTTCTGGGGCAGGAGCGCTGTGAGGCTGCAGGTCCAGGGGTGCGCTGCGTGTGGAGGAAAACACGCTGCATCTCCTGGGAGCCTAGCTTTACCAGCAACACCATACCTGCTGCCTTCTGCCCTGCCAAACCTGCTCCAGTGGATGAGAGGTGCCACCGCTTTTCTGACTGCACTAGTTGTACTGCTAATACTAATGGCTGTCAGTGGTGCGATGACAAGAAATGCATCTCAGCCCTCAGCAACTGCACTGCTAGTGTAAAAAACTTCACTAAGTGCTCCATCAGAAATGAACAGATATGCAGCAAGCTGGCAAACTGCAAGAGTTGCTCCTTAAACCTCAACTGCCAATGGGATCACCAGCAGCATGAATGCCATGCCTTGCCTGCCAAGTTGTGTGGAGACGGCTGGAGTCATGTCGGGGAGGCCTGCCTGCGCATCAACTCCAGCAGAGACAGCTATGACAATGCCAGACATTACTGTAAGAACCTGGGTGGCATCATCGCCTCCCTGTCTACTGCCAAACAGGTGGACTTTATACTGGAGGAGCTACAGAAATACCAGCAGCAAGAGAAGAAGCTGTCCCCCTGGGTGGGCCTGAGGAAGATTAACGTGTCCTACTGGGGATGGGAGGACAACTCTCCATTCACAAACACCTCTCTGCAGTGGCTGCCAGGGGAGCCCAATGACTCAGGTTTCTGCGCCTACCTGGAGAAAGCGCAGGTCTCCGGCCTCAGGGCCAACCCTTGCAATGCCAATACTGATGGACTCATCTGTGAGAAAGGAGTCGAGAGTCGTAATGCTCGTCCATGCAAGATGCCCTGCTCTCTGCACGTCACCTGCGAGAACTGCACAAGCCAGGCCACAGAGTGTATGTGGTGTGGAAGCACAAAGCGCTGTGTGGACTCCAACGCCTACGTAATCTCCTTCCCATACGGCCAGTGTCTGGAATGGCAGACtggagactgtgtgtCTCAGAACTGTTCTGGTTTCCGAACATGTGGTCATTGTCTGGAGCAGCCGGACTGTGGCTGGTGTGGAGACCCCAGTAACACTGGCAGAGGGCAGTGTGTGGAGGGCTCCTATCGAGGACCCATGAAGAACCCCCCTAAACACAGCCAGGACATGGTGCTGGATACTGGGCTCTGTCCGAAAGAGAGAGGCTTTGAATGGGCTTTTATTCAGTGCCCTGCGTGTCAGTGTAATGGGCACAGCACATGTGTGAACGGCAGTGTGTGCGAGCAGTGTCGGAACCTCACCACCGGCCCACACTGCGAGACCTGCATGGCTGGTTATCATGGAGACCCCACCAATGGAGGAAAGTGCCAAGCCTGTAAGTGCAACGGGCATGCCAACGTGTGCCAAGTGCTGACGGGGAAGTGTTTCTGCACCACCAAGGGGATTAAAGGAGACCAGTGTAACCTatgtgATTCAGAAAATCGTTACCTTGGCAACCCTCTGAGAGGAACCTGTTACTACAACCTGCTAATTGACTACCAGTTCACCTTCAGTCTGCTTCAAGAGGATGACCATTATTACACTGCCATTAACTTCATGGCCACTCCTGAGCAGACCAACAAAAATTTGGACATGTCCATCAACGCCTCAAACAACTTCAATCTCAACATCACTTGGTCTGTTGGATCAACagCTGGTACTATTTCCGGAGAGGAAGTCCCCATTGTGTCCAAGACCAACATtaaagagcacagggacagctTCTCTTGTGAAAAGTTCAGCTTCCGCAGCAATCCCAACATCACCTTCTACGTCTATGTCAGCAACTTCTCCTGGCCAATCAAAATTCAGATTGCCTTCTCTCAGCACAACAGCATCATGGACCTGGTGCAATTCTTTGTGACATTTTTCAGttgttttctgtctttattgCTGGTAGCTGCGGTGGTGTGGAAGATCAAACAGACCTGCTGGGCATCGAGGCGGCGCGAGCAACtgatgagagaaagacagcaaaTGGCAAGTCGCCCCTTTGCATCAGTTGCTATGGCACTGGATGTTGGAGGTGGCCAGGTGGACCTGCTGCAGGGAGGAATTGAGGGTCCTCCCAAACCCGTTGCCATGGAGCCGTGTTCAGGAGGGAAAGCTGCGGTTCTGACGGTGCTCCTGTGCCTTCCACAAGGACCATCAGGGGTTCCACCACCTGGACAGTCAGGTATTGCCATTGCCAGCGCATTGATCGACACCTCTCAGCAGAAGCCCATGGACTTTAAAGAAAAGAATCAGGGCTTGAAAAACCGCAAAGCTCTGCCCACTGCTCACCAAGGCACGTGTGTTTGAGAGACCCGTGGCCTCGTCTTTCCGGGCTGCTCCTTTACCAGAGTGTCCTGCTCTGATCCACGGCTGCAGACCACCGGCAGCTTCTGTGTCTGAAGAGAGACCCCCAGTGATGGGATTTAATAGAGTAGCAGAGtgctttttcttctccttcccTACAgccaacacacactgtaacactatAGGCCACCGCAACACTATGCTTATCCGGCCCCATGTGCAGCTTCACCTGTGCAGCTTCACCTGTTCAGTACCGCCGCTCAGCACCACTTCAGTCTTTCAACACTTCAACTGTGTCTCAATTTCCAGCACTCAGTGCACTTCTTCTGCACATGCTCACTGCAGCTCTCCTCTGTCAAAGGCTGGACTTTCAACACCTTCAGATTCCGGTCTGGCTAATTCCGCGACTCCCGACTGCACTCTGCAGGCCCGAGCTGTGAGACCTCACGGCAACTACCAGCAGCACTTCAGCCTCTTTTGCTGAATTGCAGTCAATGAAAGGGTCTGCTCCACTGACTCCCACCCTCCATTCAGAGCCTCAGTAACTGGCCAGACACTGATGTGCCTCTGGCCTCGTTTGTACTTTCAGTGAATGAATATGTCCCCACACTGGGGGTGGGGTGGCAGAGCAGAGGAAGTGTATGATACATGTTGCGTACCTAGTGCTAGAGCTTTTTCCAGCTCGTTTATGGACTATTGATGGTGGTGCTGTATGTGGGTGAAAATCCCATTTGTTTGCTTGCTAGGTAAACAGCCTGTGTTTGTTAAGGAGCTGCTTAATCACAATTATTAAATGCATTTCCAGCCATTTGGCTGATTTCCGTCAAAGCCAGCAAAGAGAAGAGTCTGCCATTCACAGCACAGGAAGGCTGTTAGGTTTTATTTAAGCTAATGAAGTTGTTGGTTGAATAAGAACCACTTTGTTAggaactgatcatttttatttaaaaaaaatccattatttGCTAGCGAAATCTTTTTTCACCTCTCTGCTgttccagcacagttttgcatgAACTGCACATTAGCtgctttaaaacagtttttaagaaGTTGTAAGTCACTAAGCGCGTCTTTATTCAGCTGGGAATTACAGATCGGAGCCGAGTGTACAGCCATTCCCAGCCCACCAAGTAGCTGCACAGTGTATAGCATCCTGAGGAGAGGGGTTATGTAAGAGACCACAGGTGGGTTTTGAAATGGTCCAAGAACTGGAACAGCAGTTACAGAAACAGAAGTGTTACGAGATGAATCTGGAGACTTTTAGAATTGTACAAATGTAATAATACAGGGGCTCGGTGCCTTTGTTGTATAGTACTCTTGATATATACTGCTAAGAATTAGGCTACTAGAAAAGCTTTCATTGttattggtatattttggttttcgttaatttttttcttctttgttttggAATGGCCCACCTGGTACAGATTCAGACTATGTTAAGAATTGAATTTCATTATTGACTTATAATGTAATTTTGGACTCCTAAGTTTCACACATTGTgaatgaagaagaagaggagggcCTCTTGGACAAGGGCAAATTTCATCCACTGAAAACCTGTTTCCTCCAGCCCCTCCCCACTCTGCTCCTGTACAGCTGTCTGTCCTGATGACGTCCCACCACAGGAGGCTGTTCCCAGCCATTCCCAGCGTTCTCCCAGTGCTCTCCCAGCCCGTGCACTTTGTCCCGGAGGCTGTGAGAGAACTCCTACGATGCTGGGAGAAGCACAGGAGATTTACAGGGCCTGAGAAGGAGAACTGTTTAATAATGACCTTATATAATGTCCTCCAGGATCATGGCGGGAGAGTGAACAGGGCCCTTCCCTTCACGTGTTTGTGGTACATGGATCAGAACATGTGAATCAAATGTGAATCACTCTGTTGTTCTTCGTCTAGCTCTTTCAATGTTTCCTTCATGTTttcgtttgttttttattattattattattattattattattataattattcacTTCtttgatgtttctaataaagaatataaaaggTCATTTATTTAGGGACCATTCATTGTATAATActtatgatgatgataatgattatGATACTGATGAAGAAAAACCATGTCTTTTACAATGTTTGTGAAAAAGAACTGTTTTGTTTTGATAACGGATTCCTGTGTAATACCTCTGTTATATTATAACTCTAGTCATTGAAGTCATGTAGCTAGCTTCAGTGACCacttctgtttttgtttatatttttattcttatagtGTACACAGCTGCAGTTTGTTGTAGCTGCTCCTGTAGAATATTTTTGGGCATTTGTAGTTCCATTTGCGAGTAACGTATGAATATGAACCACATTTTGAATATGATCCATGTTTTATTTGGAAAGCACCTGTGAGTGAGAGTAGTAGAGTATGCAGTTGTACCACAGTGTACGGTCTTATTACACAGGAATCATCTTTCACTGTAATGTCATAGAGAAACGGATGAATGATGCATTCATTCTTCGGTGCATATCATTAATCCTCATTGTATTTTAAAgatggacaaaaaaataaaactgttgaATATTCATA

Function

GO: NA

KEGG:

id description
K24332 ATRN; attractin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46259 lncRNA downstream 5176 4586445 ~ 4586858 (-) True G34381
TU46218 lncRNA downstream 82782 4461877 ~ 4509252 (-) True G34342
TU46182 lncRNA downstream 414381 4171053 ~ 4177653 (-) True G34311
TU46162 lncRNA downstream 456747 4133286 ~ 4135287 (-) True G34300
TU46159 lncRNA downstream 467213 4112381 ~ 4124821 (-) True G34298
TU46315 lncRNA upstream 69820 4773813 ~ 4774992 (-) True G34429
TU46305 lncRNA upstream 95118 4799111 ~ 4883208 (-) True G34422
TU46306 lncRNA upstream 110831 4814824 ~ 4883208 (-) False G34422
TU46302 lncRNA upstream 112158 4816151 ~ 4819305 (-) False G34422
TU46327 lncRNA upstream 125160 4829153 ~ 4832503 (-) True G34439
XM_022668932.1 mRNA downstream 151242 4219467 ~ 4440792 (-) True LOC103044368
XM_022668933.1 mRNA downstream 151243 4219467 ~ 4440791 (-) False LOC103044368
XM_007259178.3 mRNA downstream 430178 4148188 ~ 4161856 (-) True LOC103021465
XM_007259143.3 mRNA downstream 494079 4088103 ~ 4097955 (-) True LOC103036928
XM_022668927.1 mRNA downstream 698669 3885324 ~ 3893365 (-) False LOC103038619
XM_007259183.3 mRNA upstream 7107 4711100 ~ 4791734 (-) False LOC103022618
XM_007259181.3 mRNA upstream 7107 4711100 ~ 4772798 (-) False LOC103022618
XM_007259182.3 mRNA upstream 7107 4711100 ~ 4743453 (-) False LOC103022618
XM_007259184.3 mRNA upstream 7107 4711100 ~ 4739178 (-) True LOC103022618
XM_022668934.1 mRNA upstream 57593 4761586 ~ 4763069 (-) True LOC111192353
TU46045 other downstream 708565 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 802842 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 802928 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 802970 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 553889 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 1203981 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 1231842 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 1761375 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 1833028 6537021 ~ 6541364 (-) True G34953

Expression Profile