RNA id: XM_007259197.3


Basic Information

Item Value
RNA id XM_007259197.3
length 4408
RNA type mRNA
GC content 0.49
exon number 26
gene id llgl2
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4943870 ~ 4966430 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTGAGCTGCAGTCAAGAGATCCGTAGCTGCGCTGGCTGGAGGTAAAAGTCCTCCACTCTCAGCGGGCCTGGGGCCGCAGGAAACGGCGAGGCTGCAGTGGGGATCTGGAAGCTGAGAGAAACTGTATGTGTCTGCGTTAACTTTaggttttatatgtgtgttactTTGACCTAAACGTACGGAGTCGGCGGTTTTCCCcctcaaagaaaagaaaagtagtCCTAGGAGTGTGGCCCAACATCCGTAAACAGTGAGGAGAGCCGCTGGGACAACAGCGTCGCCCCGGATCAGAAAGGTGACAGAAGTGCAGAGGGCAGCGAGAGGCCCTTGATTGTCCCGGGAGAATGAAGAGATTCCGGCGACATGGGCATGACACTCAGAGGGACAAACTCAAGCAGGAGCTCTACCAGTTCAATAAGACTGTAGAGCATGGCTTCCCCCACCAACCGAGTGCTCTAGGCTTCAGCCCTAGTCTGGAGCTCCTGGCCATTGGTACCAGATCTGGAGCCATCAAACTCTATGGAGCTCCAGGGGTTGAGTTTATGGGACTGCATGATGAGAATGCTGCAGTCACACAGGTGCACTTTCTCCCACGACAGGTTGAGCTTGTGACTTTATTGGATGACAATAGTCTGCACATGTGGACACTTCGAGCTCATAAAGGTGTATCAGAGCTGTTGGAGATTGGACGCTTTACGCTCACCGGTCCTCCTGGTGCCATTCCTAGCGTGACGCGAGTGACTGCCGTCCTGGCCCATTCTTCAGGTGAGCTGCTTCTGCTGGGCACTGAAGGTGGCCATGTGTTCGTAGTGGAGGTGCCTGGCTTTAGGGAGCTAGAGGAGAACAACATCAGTGTGGAGGATGTTCAGAGCAGAGTTCCAGAGGAATATGTAGGCCGCAGGAACCTGGAGTGTGTGGAGGCTCTACAAGAGAATCCTCTCAACCCCCGGCAGGTCTTGATAGGCTATAGCCGAGGTCTTATGGTTCTTTGGGACCTCGATCGGCGGTGTGCCATTCAGCACTTCCTGGGCACACAGCAGCTGGAAAGTGTGTGGTGGATGGAGGATGGAGGAAACATTCTTAGTTCCCATAGTGATGGCAGCTATTGCCATTGGACTGTGACTGGAAAGGATCCACAGACTGAACCAGAGAAACAAGAGACCCCTTATGGGTCCTTTCCATGCAAAGCCATTTCCAAAATTCTACAAATATCTACAAGACAAGGTCCCCCGTTCCTAATCTTCAGCGGTGGTATGCCAAGGGCCAGCTATGGAGACAGGCATTGTATCTCTGTCATACACAGCAAGACACATGTAGCACTGGACTTCACTTCCCGCATTATAGACTTCTTTGTCATCAGAGACGGAGAGCGCCACAGAGGTGATCCCAGTGCtctggtggtgttggtggaggAGGAACTGGTGGTGGTGGACCTGCAGAGTGAGGGATGGCCGGTGATCCAAACCCCTTACCTAGTGCCACTGCACTGCTCAGCAATCACCTGTTCTCACCATGTCTCCTCCATCCCTCTCAAACTGTGGGAGAGAGTCCAGGCTGCCGGCAAAGTGCAGAACACACACTActcaaaaaagCCTTGGCCAATAAATGGAGGCCAGAATCTTGCCCCAGACCCTCCCCAGAGAGACTTGTTGCTGACTGGTCATGAAGATGGAACAGTGCGTTTCTGGGATGCCTCGGGGGTCTGCCTCTATCCCATGTACAAGTTGAGCACAGCTATGGTTTTCCACACGGACGCAGACCCTAATGACAACATGAACCAGGGGACTGAGGGCGAATGGCCACCCTTTCGCAAGGTGGGCTGCTTTGACCCATACAGTGATGACCCCCGACTTGGAATTCAGAAGATCCATCTGTGTAAATATAGTGGTTACCTGACTGTAGCAGGAACTGCAGGACAAATcctagtgctggagataaatgATGAGGAAGCTGAGCAGACAGTGGAGGCTACAGTAGTGGACCTGCTGCAGGGACAAGAAGGTTTCCGCTGGAAGGGCCAGGCACGTCTGGACCTCCGGGAGGAGCCTGTAACATTTCCCCCAGGATTCCAGCCCTTCGCTCTGGTGCAGTGCCAGCCCCCTGCAGTGGTCACAGCAATTGCCTTGCATTCAGAGTGGaagttggtggcctttgggacCAGCCATGGTTTTGGTGTTTATGACTACCAGCAGAAGAACAACGTCATGGTCAAGTGCACTCTCAACCCCAATGACCAGGTGGCTCTAGAGGGGCCACTGTCTAGAGTGAAGTCCATAAAGAAGTCTCTTCGGCAGTCTTTTCGCCGAATCCGCAGAAGCAGAGTCTCCATGCGCAAACACAATCCCACCAATGCAGCCAAGCTGCATGAGATCAATGCACGGTTAGAGGCAGAAGCTCTGCAAGAAATGGAGTTGGCACCAGTCCAGAGGAAGATTGAAGCTCGCTCTGCTGATGACTCCTTCACAGGCCTCGTCAGGACCCTCTATTTTGCTGACACATTCCTCAGTGACAGCTCTCAAAGCACACCCTCTCTGTGGGCGGGGACTAATGGCGGTGCTGTCTATGCCTACATGCTACGCCTCCCTCCTGTAGAACGAAGGATGGATGATCAACTGACAGCTTATGCAGCTAAAGAGATTCAGCTGATGCATCGTGCTCCAGTTGTAGGCTTGGTGGTTTTGGATGGGAGGGGAGCTCCACTGCCTGAACCACTGGAGGTGGCACATGATCTTGCCCGCAGTCCTGACATGCAGGGTTCTCACCAACTGCTCGTCATCTCAGAAGAGCAGCTAAAGTTATTCAATTTGCCTAAAGTGAGCAGCAAAGCAAAGCTTAAACTGACAGCAATTGACGGTTCTCGAGTGCGTCGAGCCGGAGTGGCCTGGTTTGGCAGCAGTCGAGTGGAGGACTATGGAGAGAGCAGCTTGGTGGTGTTGACCAATCAAGGCGAGCTACATGTGATCTCTCTGCCGTCAATCAAAATGCAAGTGCACTACCCTTGCATCCGAAGAGAGGATGTAAGTGGAATTGCGTCCTGTGTCTTCACCAAACATGGCCAGGGGCTCTACCTGATCTCTCCATCAGAGTTTGAgcgcttttctctctctgcacgCTGGGTGGTGGAGCCACGCAGCCTAGTGGAGCCTCCCACCCAAACCAGACCCACATCAACCTCAAGCCAAGCTCACCAAGACCAACCTGATGGAGTGACTAATGAACAcagAAACATTAGAAGGAACAGCGACAGCTATGAAAACTCTGCTAGACAAGTAATGGAGCATGCTTTGCTGAATGATGAGAATGTGCTTCAGGAGATTCAAAAATCACTAGAAGGAGATCAGATGTTTTTGGAAAACAGTCTGAAGACTAAGCCAACACCAAGCAAGATGCTGAGTAATGGAGATTAAGCCTTGTAACCTGTGCCTGAAACGTCCACTCCGGCCTTGCTGAAGACCTGAACACTACTGCTAGTACCACTACTGAACTATGTGAAGCCCTGGAGAGAGGAACGCCTGCTACACCGTGGGGTGTCAAGGGGACCACCACCTGTGCCTGCCAAGACCAACCACTGTATCTCCTATTCCATAACAACGACCGGCCCCAGCATCAGCCTCTATCTTTCAGCATGCCCCTTCCGCTCCTGTGGGGCTGCAGCTATGCCATCTCAGTGTTGAAGGGCATAAGACTGCTGGCAGGGGcattcctttttaattttttattgtttttatctgttaatttaaatttttacacGCATGATTTTTGTAAGTGATTTGAAGACCTCAAAATCTACATAAATATTGTGTCTCACAAGGGAAAAGATACCAACAGTTATTGGATGGGATTTAAAACATGAAGACGAAGCAGTCTTAGGACTTGTACTAAAGTGCTAAAAACAATGAAGAGTCCTGATGAACCACATGTATAACAAATACTCTTACTAAGTACTCTAAAAGAAGTAGTAATGCCTTTTCTTCCGTCcaggcaacaaaaaaaaaaaaaagagagaacagtGTGTGTAGTTGATGTTGTAGGTACTTTTTCACTACTGTGTAGCACATATGCTGTAATTTTTAGGGGGTACAACTTTCTAAGGGGCTtggtttttaatctttttttattgtcatcTTTTTATGCCAGTTATGCATACTGTAATTTAGGAATGTAATTTTAAGAGATTGTAGtcaaatgtttaatatatatgtatatgaaaaTCTGTACCTTGTTAATGGTGGACTGTATTTTCTGATTAAGGAAATATTTTGGTACTGTCTCTTGAAATGCTCTCAGCATTTCTTGAGTctagaatatatttttgtagttaATTGATCATGTTAAAGAACACTACCATTTGTAATTTGACACTACCATCAAGTCTGCTGAGTaaatttttaaacttttcacCACaa

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0031581 hemidesmosome assembly biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0010719 negative regulation of epithelial to mesenchymal transition biological_process
GO:0050680 negative regulation of epithelial cell proliferation biological_process
GO:0007049 cell cycle biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0045682 regulation of epidermis development biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06094 LLGL; lethal(2) giant larvae protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46296 lncRNA upstream 19104 4923281 ~ 4924766 (+) False LOC103025551
TU46289 lncRNA upstream 68316 4875138 ~ 4875554 (+) True G34409
TU46290 lncRNA upstream 72450 4870364 ~ 4871420 (+) True G34410
TU46275 lncRNA upstream 115964 4824343 ~ 4827906 (+) True G34396
TU46273 lncRNA upstream 168529 4775021 ~ 4775341 (+) True G34394
TU46382 lncRNA downstream 5355 4971785 ~ 4973087 (+) True G34485
TU46387 lncRNA downstream 12317 4978747 ~ 4979412 (+) True G34489
TU46399 lncRNA downstream 87933 5054363 ~ 5056352 (+) True G34500
TU46440 lncRNA downstream 141380 5107810 ~ 5125290 (+) True G34532
TU46448 lncRNA downstream 168969 5135399 ~ 5135654 (+) True G34534
XM_007259196.3 mRNA upstream 421 4938999 ~ 4943449 (+) True galk1
XM_007259195.3 mRNA upstream 6844 4931415 ~ 4937026 (+) True twnk
XM_007259192.2 mRNA upstream 19186 4882556 ~ 4924684 (+) True LOC103025551
XM_007259189.3 mRNA upstream 111322 4829038 ~ 4832548 (+) True LOC103024595
XM_007259188.3 mRNA upstream 124566 4799103 ~ 4819304 (+) True LOC103024286
XM_007259200.3 mRNA downstream 1144 4967574 ~ 4971335 (+) True chac2
XM_007259201.3 mRNA downstream 1144 4967574 ~ 4971335 (+) False chac2
XM_007259204.3 mRNA downstream 64377 5030807 ~ 5053505 (+) True thbs2
XM_007259205.3 mRNA downstream 103623 5070053 ~ 5077912 (+) True LOC103029028
XM_022668936.1 mRNA downstream 120579 5087009 ~ 5099703 (+) True LOC103044692
TU46176 other upstream 765787 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 2886996 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 3106294 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 3555851 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 3821998 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 1653240 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 1653241 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 1764524 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1935987 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 5506944 10473374 ~ 10474792 (+) False G35744

Expression Profile