RNA id: XM_022668935.1


Basic Information

Item Value
RNA id XM_022668935.1
length 2973
RNA type mRNA
GC content 0.42
exon number 10
gene id entpd1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5099968 ~ 5125198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGTGTTTGTCCAGTCCGGGTTTCTGAGGAGCTGCTGAGCTGACCCCTCAGGGTGGAAGTGAACGAAACGCTCTTCCTTCCTCTGATGGATTCGCCTGCTTCACACGCTTCTTCCGCCGGGAATGACCAGCCTCTGGAAATGAAAGCCAAGAATCCCTGGCACCGGCCCAGAATAATCTTCATCACTGTCCTTTTTGTCATTGGAATCGTCTCAATGGTGGCCATTGGAGTAGTACAAAACAAACCTCTTCACCAGAAGTACAAGTATGGGATAGTTCTGGACGCAGGCTCCTCCCATACATCTGTCTATATCTACCAGTGGCCAGCAGAAAAGGAGAACAACACTGGCATGGTTCAGCAGATGGATGCCTGCAATGTTCCAGGCGTAGGGATCTCAGGTTACTCCACTGAGCCAAACAGGGCTGGTGATTCCCTAAAGTCTTGCATGGATAAGGCGAGGTCAATAATACCCAATCACAGGCACCCAGAGACACCTGTTTACCTTGGCGCAACAGCAGGAATGAGACTACTTGAgatgaaAAATGCAGCTGCCTCAGAAAAGGTGCTAGAGTCTGTGGAGAGGGTCCTGCAGACCTACCCGTTTTCCTATCAGGGTGCTCGAATTATCAGTGGTCAGGAAGAGGGAGCGTTTGGCTGGATCACTGTCAACTACCTAAATGAAAGCTTAAGACAGgCCTCAGGCACTCTCGGAGCTCTTGACCTGGGTGGAGCATCCACTCAGATCACCTTTGTGTCTGGGCAGAAACAGGAGTCTCCAGACAATTCTATTGACTTCAGGCTTTATGGCCATGATTACCATGTATACACTCACAGCTTCCTCTGCTATGGGAAGGACCAGGTCCTGAAGCTTTCTTTGGCAAATGAAATACGACCAGTCCATACAAAGACAGAGACTATTGTGGTGGAGGACCCTTGTTTCCATCCAGGCTACAGAATGAACAAAAACTTTCAGAGTGTCTTTAACAGTCCCTGTGTAACAGGCTTGAGTTATCCCGAGAAAAATTTCGTTCATATGGGCTCGGGGAATGGAACGAAGTGCCATGCAGCAGTCAGAAAAGTCTTCAACGATAGTGGCTGTTCTTACTCCATATGCTCCTTCAACGGCATCTTCCAGCCCCGAGTGGAAGGACAATTTGGGGCATTTTCTGCTTTCTTCTTTGTGATGGATTTCTTGAACTTGACGACTTTAAGCTTAGATGAGGCTAAGGAAGAGCTGGGAAAATACTGTGCCACCCCATGGGAAATTATCAAGCAAAACCACCCTAATGTAAAGGAAAAGTATCTTGCAGAATACTGCTTCTCAGGAACTTACATTTTGACCCTGCTGGAAGATGGATATAATTTCACTTCTCACAACTGGCAAGACATCAAGTTCATCAAGAAGATTGGAAACAGTGATGCTGGCTGGACGCTGGGCTACATGCTCAACCTGACGAACATGATCCCTGCAGAATCTCCAGACACACCACCCCTGCCGTATGGCGGTTACGTCACACTCATGGTCCTCTTCGCCGTGATGATCCTTCTCCTTGGTTTACTAGCCTGCAAAGTCTTCCGCCGACCAACTGGCTCAGCCCAGAAAGAAATCATTTAAGATCCACTGTTCTGTGTGCAGAACGTTTGTTCCTCAAGAAAAAAGCCTACTGAACCAACAACCACttttgtattttaaactgtgttttaagaAGAACAGTTCAGAGAAAGTTTTGCATCGACTTTATACCTCATCTGAAGGAAACACAGGCtcaatatgttttttgtaaaatatttgagAACCTGCTTAATTGGAGGGACACTGGAGCACACACAATATCCTTACATAACTGGATTGTAATGTATATTCATTTACTCTGGTTTTTGTTAGGATAGAATGAATTGAAGAATGCCTCCAGAAATCTCAGGAGTAGAGACTGTAACAGAGAAAATTGAGAGAGGATTGTAGATTGTAGATTGTAGATAGGTGTATATAAGAGTGGACTGGATGATAGCAGTTGAAAAATGAAGCCAATACTGTACTACATCTTCTGGCATATGGCTGCAGTACAACTGTAGAACTGGTTACCCCAATGCCCATTCCCATGTAAGTAAATGGAGCACGGAGGAAAACTGCACATCCATTTTCTGTCACTTTTTTTGCCagttctgtgtttgtttgtttttttaaagttaacaCGTTTTATATTGATTATCTAGTGACTTTTCTAGGATTGTGGCGATGAGGTGATTGCAAGCTGTGGCCAAGTGCTAATACTAAATGTCTGATACCATGAACGCATACATTTATCAGAAACGTATTTCAAGAAAATAAATGCCACATTGGTGTACATATAAATCTGATGTGCAGTAAATTGAGCCATAATTTCATGGTAATCATGTAAAATTAAGATGGCAGTTTTGGCCATCTTTACGcttcaaaactttaaaatggaaGTCAACTGAAACATACTGCCCACTCATATATACCGTCTATGATTTCTCCTAAATAGTAAAGTacactaatatactgtatattgtgtgcCTTTGATCATTTTGAAGAACTTGCATTCATTCTTATTCATAGCAAAACTTTTCTCAGCAATAGGACTGTCTGACAGGACAAAGCCAGTTAATGTAGACCTACAACTGtgttataactgtatataaaataccCAGTTTAAAGTACTTATCTGTGTTAAATCGCTATGGAAATTTCAGCAGGACACACCcactttatttcactgaattttGAAGAGACTCAGTGTGACATTTCTAATAGCGTTGTTCTTTCCAACTGGTGTTTTGTAATGTCACACCACAGTATGTTTAAACAGGATGATTGTTGCAAATGTCTTGTGTGGCACATCCATTTAAAATCCTGGTGTAACTGTCGGTGTTACTGAAGTAACATGTACATGGGACaccttttatataaaatatatttaaacaataaaataaacagtgagtTTATTTTA

Function

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0071405 cellular response to methanol biological_process
GO:0046688 response to copper ion biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46433 lncRNA downstream 21120 5078535 ~ 5078848 (-) True G34526
TU46409 lncRNA downstream 126877 4971699 ~ 4973091 (-) False psme4
TU46405 lncRNA downstream 128874 4967601 ~ 4971094 (-) True G34505
TU46374 lncRNA downstream 139045 4959388 ~ 4960923 (-) True G34477
TU46370 lncRNA downstream 145967 4943900 ~ 4954001 (-) True G34475
TU46456 lncRNA upstream 30104 5143072 ~ 5143335 (-) True G34541
TU46457 lncRNA upstream 30756 5143724 ~ 5144056 (-) True G34542
TU46460 lncRNA upstream 37342 5150310 ~ 5150963 (-) True G34544
TU46458 lncRNA upstream 38404 5151372 ~ 5152413 (-) True G34543
TU46475 lncRNA upstream 78065 5191033 ~ 5193859 (-) True G34556
XM_022669430.1 mRNA downstream 104055 4971698 ~ 4995913 (-) True psme4
XM_007259194.3 mRNA downstream 169261 4927516 ~ 4930707 (-) True mrpl43
XM_007259191.3 mRNA downstream 221209 4870049 ~ 4878759 (-) True mfsd13a
XM_007259190.3 mRNA downstream 231839 4853007 ~ 4868129 (-) True LOC103024913
XM_015608355.2 mRNA downstream 252560 4819922 ~ 4847408 (-) True sfxn2
XM_007259207.2 mRNA upstream 47940 5160908 ~ 5163466 (-) True LOC103029658
XM_007259211.3 mRNA upstream 50982 5163950 ~ 5165625 (-) False LOC103030716
XM_022669411.1 mRNA upstream 50982 5163950 ~ 5165617 (-) True LOC103030716
XM_007259213.3 mRNA upstream 142651 5255619 ~ 5362472 (-) True tcf7l2
XM_007259215.3 mRNA upstream 142651 5255619 ~ 5362471 (-) False tcf7l2
TU46045 other downstream 1216499 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1310776 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1310862 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 1310904 3783125 ~ 3789064 (-) False prr15l
XR_002649848.1 other upstream 144914 5257882 ~ 5362485 (-) False tcf7l2
XR_455628.3 other upstream 795006 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 822867 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 1352400 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 1424053 6537021 ~ 6541364 (-) True G34953

Expression Profile