RNA id: XM_007259208.3


Basic Information

Item Value
RNA id XM_007259208.3
length 3724
RNA type mRNA
GC content 0.47
exon number 18
gene id aldh18a1
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5147340 ~ 5158697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGTGTGCGTCTCCACGTCGCTGCATGTCAACATGGTCGAGGGGAGAACTGGAGCCACGAGTTGATGTGGCAGTCAGGACCGCCGCTCACGCTCCCTGAACTTGAACTCTGAATTCCGGGTAATTCGTTTCCAGAGCGGGTTTTCAGTTGAGTGAGGTCACCATGTTACTCCAGAGACTGTCTCTGTGTCCTCGGCTCATGTTGGGCCCAAAAACCCTACAGACGAGATCTGTTTCACAGGGAAAGAATCCCTCTACCTCTCCATATTTCAGACTCCATCCTGTGCGTCAATGGAGTAACGTGCCTTTTCTTACAGTGCCTCTGGCTCGTGCCCATGGTAAGTCGTTCGCCCACCGCAGCGAGCTGCGCCAAGCCAAAAGGATTGTGGTGAAGCTGGGCAGTGCTGTGGTAACTCGAGGTGATGAGTGTGGCCTTGCTCTTGGCAGGCTTGCCTCCATTGTTGAACAGGTGGCAATGCTACAGAATCAGGGAAGAGAAATGATGATTGTCACAAGTGGAGCTGTGGCATTTGGGAAGCAGAGGCTGCGGCATGAAATTCTCCTCTCTCAGAGTGTCAGACAAGCTCTTCACTCCGGACAGAATCAGCTTAAAGATATGTCTCTGCCTGTTTTGGAGGCGAGAGCATGTGCTGCTGCAGGCCAGAGCGGCCTGATGGCTTTGTATGAGGCCATGTTCACTCAGTACAGCACCTGCACAGCACAGatcttgGTGACAAACTTGGACTTCCATGACGACCAGAAGAGACGAAATCTTAACAGCACCTTGCACGAGCTGCTGCGTATGAACATCGTACCCATCATCAACACCAATGATGCCGTGGTGCCTCCTCCAGAGCCCAACAGTGATCTCCAGGGGGTAAACGTCATAAGCATCAAGGACAATGACAGTTTGGCGGCTCGGCTAGCAGTGGAGATGAGAGTGGACCTCCTCATTGCTCTTTCTGATGTAGAAGgccTTTATGACAGCCCTCCTGGAACAGATGATGCCAAACTGCTGGATACTTTCTACCCTGGTGACCAGCAGTCAATAACCTATGGCACGAAATCCAGGGTTGGCATTGGGGGAATGGAAGCTAAGGTGAAAGCTGCTCTTTGGGCTCTGCAGGGTGGCACTTCTGTGGTCATTGCTAATGGCACCCACCCCAAAGTCACAGGCCATGTCATCACTGATATTGTAGAGGGCAAGAAGGTGGGCACCTTCTTTTCGGAAGTCAAACCTGCTGGTCCCACTGTGGAGCAGCAGACTGAAATGGCTCGCACTGCAGGGAGGACACTGGCTTCTTTACTTCCAGAGCAGAGGAGTGAAATCATTTATGCTATGGCTGACCTTCTGActgagaagagagaagaaattCTGTCTGCTAACAAGAAAGACATGGAGCTTGCTTTGAATTCTGGACGTATGCCTGCTGTCATGCTAAAGCGTCTGAGCTTGTCTTCGTCTAAGCTGAACAGTCTAGCAATCGGCCTTCGGCAGATCGCTGTGTCTTCTCAGGACAGTGTAGGAAGAGTCCTGCGCAGGACCCGTGTGGCCAACAACCTGGAGCTAGAGCAGATCACTGTTCCCATTGGAGTTCTGCTTGTCATTTTCGAATCCCGCCCAGACTGCCTGCCTcagGTGTCTGCATTAGCTATTGCTAGTGGGAATGCTCTACTGCTAAAGGGTGGCAAAGAAGCAGCAAACACGAACCGCATCTTACATGAAGTGGCCCAGGAAGCTCTGTCCATGCATGGTGTCAAAGATGCAATACAGCTGGTGAGCACACGAGAGGAGGTGGAAGATCTGTGTCGCCTGGAAAAAATGATTGATCTGATCATCCCTCGTGGCTCATCTCAACTGGTCAGGGATATCCAGCGTGCTGCTAAGGGCATTCCTGTGCTGGGACACAGTGAGGGCATTTGTCACGTTTATGTCGACCATGAAGCCAGCATTGATAAAGTCATCAAGATCGTGAGAGACTCAAAATGTGACTACCCTGCAGCCTGCAATGCTATGGAAACCCTGCTGGTTCACAGAGATGTGCTCCGGACCCCACTTTTTGACCAGATTATTGACATGCTGAGGACAGAACAAGTGAAAATTCATGCTGGTCCCAGGTTTGCATCATACCTGACATTCAGCCCTTCAGAGGTGAAATCTCTGCGTACAGAGTATGGGGATTTGGAATGCTGCATCGAGGTAGTGGACAGCATGCAGGAAGCTGTAGATCACATTCATAAATATGGCAGCTCCCACACTGATGTCATCATCACTGAGAATGAAGAGACAGCTGAGCAGTTTCTGCAGTTGGTGGACAGTGCCTGTGTGTTTTGGAATGCTAGCTCACGGTTTGCTGATGGATATCGCTTTGGCCTTGgtGCGGAGGTTGGAATCAGCACTGCTCGTATTCATGCCCGCGGTCCTGTGGGACTGGAGGGACTGCTCACTACTAAATGGGTTCTGCGGGGAGATGGCCAAACTGCTGCAGATTTCTCTGAGCAGGGCAGTATGAAGTTCCTGCACGAGAACCTCCCAATTGCACAGCCCCTGACTGGACAAAGAACATCCAATTAgccactcaaaaaaaaaaaaaaaaaacattttaatttttttatatagtgacTGCCCAAAGCATCCACTTCTCAGAGGAGCCCCTGCTTGGCCTGTGAAGTTAATGGGAATACAATAGCATCTGTTGTAAGGTTACAGATAATAGCGGCACAAACACATAtgcattaatttatattttccttctaCCTCAAATTGTTAATGGGCCTAGTTCATCACTTATTTAACCAACCAGCCAATGAGGATCACATCTTATATCTGTCGGTTCATCAGATCCTGTGGAAATCATTTATTGTTAAGTCAGTTAGGCTGAATGTGGCTCACTGCTCTTGGTATGTGACAATTGTGTCCTTCTGTATTTCGACCATTATTCCACATAGGGTTTGAGGATCCAGGCATTTTGCCCTATTGCTGAGCCTCTAAGCATTTGATGCATTATTTATCCATATTTCTGCTCCTTATTGATTCCAAAAAACACACCATTTAGGTTTATGGCCTATAGCATTAATGTTCAGTTGTATCACCCACTCCCAAGTGAAATTCACAGGGCATATCACCATGACTGTTGCCAATATGATTTGTAGAGGAAGTGTGCTTTGaagaaaaagtatttatacatGTTTGCATTGTCTTTATGCCGAGCTACCCTGTGATGAGCAGCTgaaagcaaaaataacaaaaaggaacTTTAAATGGTATGCTCAGCTCCTGTGTTCAAAACCTGAATTTCTGTCTCACATTGGGTAGAGTGGACAACTGCCAAAATGTGCAACCATCAAAAAAACATCAACCTGCAAAAGTCAGAAGTTGTTTTATTATGACAATTTCtaatttaataaaagaagaaagctGTGTTTTTGAAACAGGAACCAGATTTCCTGTGCAAAATACATCAGGTACATCTTTTTATCAGTACactacacatttaaaataggaTTCAATGGAAAAAGTAAGCtaaacaaaacctttttttttttggtttttccTTTCGCTGTCTGAAAGTACAGCTCCAGATTTGGTGTCTACTGCTGGAGAGTTATGTGAAAGTGCTGTAACATTccaaaaaagctgtttttggtGATGAGCAGTGTACGCTAAAGCTGTGCAGTCATTTTGTATTATCTCTGCATTGTACAATAAATGTTTTCCAGAATA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006561 proline biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004349 glutamate 5-kinase activity molecular_function
GO:0004350 glutamate-5-semialdehyde dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46453 lncRNA upstream 753 5146076 ~ 5146587 (+) True G34539
TU46452 lncRNA upstream 2155 5144806 ~ 5145185 (+) True G34538
TU46451 lncRNA upstream 2704 5144422 ~ 5144636 (+) True G34537
TU46450 lncRNA upstream 3284 5143748 ~ 5144056 (+) True G34536
TU46449 lncRNA upstream 4005 5142981 ~ 5143335 (+) True G34535
TU46469 lncRNA downstream 5969 5164666 ~ 5165607 (+) True G34552
XR_002649854.1 lncRNA downstream 50771 5209468 ~ 5299021 (+) False LOC111192354
XR_002649851.1 lncRNA downstream 50771 5209468 ~ 5271003 (+) True LOC111192354
XR_002649852.1 lncRNA downstream 50771 5209468 ~ 5271003 (+) False LOC111192354
XR_002649853.1 lncRNA downstream 50771 5209468 ~ 5271003 (+) False LOC111192354
XM_022668936.1 mRNA upstream 47637 5087009 ~ 5099703 (+) True LOC103044692
XM_007259205.3 mRNA upstream 69428 5070053 ~ 5077912 (+) True LOC103029028
XM_007259204.3 mRNA upstream 93835 5030807 ~ 5053505 (+) True thbs2
XM_007259200.3 mRNA upstream 176005 4967574 ~ 4971335 (+) True chac2
XM_007259201.3 mRNA upstream 176005 4967574 ~ 4971335 (+) False chac2
XM_015608399.2 mRNA downstream 414768 5573465 ~ 5579442 (+) False zdhhc6
XM_007259232.3 mRNA downstream 414812 5573509 ~ 5579442 (+) True zdhhc6
XM_007259235.3 mRNA downstream 414815 5573512 ~ 5579442 (+) False zdhhc6
XM_007259243.3 mRNA downstream 437384 5596081 ~ 5607391 (+) True LOC103039360
XM_007259244.3 mRNA downstream 437384 5596081 ~ 5607391 (+) False LOC103039360
TU46176 other upstream 969257 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3090466 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 3309764 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 3759321 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4025468 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 1460973 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 1460974 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 1572257 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1743720 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 5314677 10473374 ~ 10474792 (+) False G35744

Expression Profile