RNA id: XM_022668939.1


Basic Information

Item Value
RNA id XM_022668939.1
length 4228
RNA type mRNA
GC content 0.44
exon number 13
gene id tcf7l2
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5255619 ~ 5362486 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACAGGGCGACTCTCCTAAACTCTGCTGCTCTTCACCAAAGCTGCCTTTTCCTTCCCTGCTTTTCAAACTaaagcctctctctctttctcgctctctctctctctcgtctgcTCGTTTCCTCAagccctttttttctctctcgctctctccctctctctcccacactctctctctctctctctctctccctccaatACTTTCCTGCCCCTCTCTATTTATGAAAACGTCACTTCAAGTCCCTCCCTGTTTGAATCTCATTAGTTTCTTGTGTGTTTCTCCCTGTCAATAATCCCGAATCCAGACTCTCTCTATTTCCATCCCTCTCTATCTGTCAATCAGCGCCGCCTTTGAACTGAAAACCACTCCGACCAACTTCAACTCACTCAATCCGAGCGCCTCGGCTCCATCTCCGGCTTCTTTTCCTGCCAAGATCccccctcttcttcttctttttttgagtttttctaCTAGCCGCCAGAGCTCGGGAAACGCCAGGGCAGACCCCCTGAAAACTACTCCTTAAAAAAAGAGACTCTGGGATTCGGGATCGCGGAGATCAAGGCTTTAAAAACTTTGCGTTTTTCGCCCCCCAAAATTGCTCGGGAAAATGCCGCAGCTGAACGGCGGTGGAGGGGACGATCTGGGCGCGAACGATGAAATGATTTCGTTCAAAGACGAAGGAGAGCAGGAGGAAAAGATCTCGGAGAACTCTTCTGCAGAAAGGGATTTAGCAGACGTCAAGTCTTCTCTTGTGAACGAGTCGGAGACGAACCAGAACAGCTCCTCGGACTCGGAGGCGGAAAGACGGCCTCCGCCTAGGTCGGAAACTTTCAGAGACAAAACACGAGAAAGTTTAGAGGAGGCTGCGAAAAGGCAAGATGGAGGGCTGTTCAAGAGCCCCCCGTACCCGGGCTATCCATTTATAATGATCCCCGATCTAACGAGCCCCTACCTCCCCAACGGATCACTCTCTCCGACGGCACGCACAtCTAATAAGGTCCCCGTGGTACAGCACCCTCACCATGTGCACCCGCTTACGCCTCTGATCACCTACAGCAATGAACACTTCACGCCTGGGAACCCCCCTCCACACCTACAGACAGACGTGGACCCCAAAACAGGAATCCCGAGGCCTCCACATCCTCCAGATATATCTCCCTACTACCCTCTATCGCCTGGCACTGTTGGCCAGATCCCCCATCCGCTAGGATGGTTAGTACCACAGCAAGGTCAACCAGTTTACCCAATCACAACGGGAGGTTTTAGACACCCCTACCCGACTGCCCTCACTGTCAACGCATCCATGTCAAGATTCCCTCCCCACATGGTGCCCCCTCACCACAGTTTGCACACCACGGGGATCCCTCACCCTGCCATCGTCACACCCAATGTCAAGCAGGAGTCCTCTCACAGTGACATTAGCACGCTCAACAGCTCAAAACATCAGGACCAGAAAAAGGAGGATGAGAAGAAGAAGCCACACATAAAGAAGCCCCTCAATGCATTCATGCTGTATATGAAAGAGATGAGGGCCAAAGTGGTGGCAGAATGCACGCTGAAAGAGAGCGCAGCTATCAATCAAATCCTAGGCCGAAGGTGGCATGCATTGTCTCGAGAGGAGCAGGCTAAATACTACGAGCTGGCCAGGAAAGAACGACAGCTACACATGCAGCTCTACCCTGGCTGGTCAGCACGTGACAACTATgggaaaaagaagaagagaaaaagggaaaagcaGCAAGCAGAGGGCAATGaacACAGAGAATATTTTCCAAATCCTTGCCTTTCACTCCCTCCGATTACAGACCTGAGTGCCCCTAAGAAGTGTCGTGCACGCTTTGGGCTCGATCAGCAGAATAACTGGTGTGGCCCGTGCAGGAGAAAAAAGAAGTGCATTCGCTACATTCAAGGTGAAGGCAGCTGTGCCAGTCCTCCTTCTTCAGATGGAAGCTTACTAGAGTCCCCCCCATCCTCCCCCTCCATGGTCTCCACCTCTCCGCCCTTGAAAGAGTCCAAACTACAGACTGAACAAATGCAACCTCTATCACTGACTATGAAACCGGCCCCCCTGGTCTCGTCCTCACACCACCCACACCAACACCTCACCATGCCGGTGCCCTTAGCTCAGCTGGACAACTCAGGGGCAGGCAAAACGCCCGGCTCCGCCCACAATGGCTCCTTGGACCCTTCAGACGTGTCGTCGTCATCTCGCCCCTCAGGCTCCGCCTCTTCTCGGCCTGCATCAGCGTGTCATTCCCATTCTCTGCTGCCCAGCTCTGCCCCCACACAACCACTTTCGCTCGTAACCAAGTCAATAGACTAGGCTAGACTAGCTTTGCTTTACCAGCTTTCAACTCCTCTTGTCTGTCTGCTGcctttgtattttgtttttttttttggttctctTTTTCctatttctgtttctgtgcCATATGGCTTTGGAAATTAGTTAATTCTTTTATCAAAGTTCATTGGTCAATATTTGACCTGTCattatctaaaattaaagaaattattataattataatattgatAAAGTACAATGAGTTGTAGAGTATGGCTTTGTGAATCTGCCAAAATTTTTAAGAtttgtttttgttgcttttttattttagtgttcaaCTGTACAACAGATAAATCCATAATTGTTTTGTAGTTCAACATAGACGTGTTAAAAAGACAGATATAAAAGTAGGTTAAGTGAGGATTCAGTGAGCCCTTTTCTTAAAAAGAGTTGGTTCTACttcattatttgtattaaatacgAGCTTGCGAACCAATCATTTTACACCTGTTCAAAACGGAGGGCACGAAGACCGTGGAGACACTTCTCCAACCGAGGAACAACTTTAATTGTGATGTTACTTGTTCTTGTTTAAATGTACAGAaatattggggggggggggttactgTGTTAATATGCATTGTTCCATTGCGttgtctattttattttttatttttgtcgtTGTTTACCTTGGGAGTGGGGTTGAGGTGGGTTGGGTTGGCTAGACTCACTTGGAGGAACTGTTTTGAGATGGGGTGGGGGTCTGGGATTGGGGTATTCAATACAAAATGTCACAACGCTAGGACCAGTAGTATTTATTGCTTTAGAGATTGCTTGTTGTATCCTGTATGTCGtccctttttaaaatattttctttgtcTTAATACATTgtacaaatcttttttttatgtaagcaacttatataaatatatatataaatgatccATTTTTACAAGGAGGTTTTGAagttaaaaattgttttttttttgttttcacataCGTTTGTTTTGCTAAAGACCAGAATTCCACCAAAACAGTGTAGATTCTCCAAAACAGATGTATGCACAACTTCATTTCTAGAAACATATCTATAAGCCATTTTacaatagaagaaaagaaaacttGAAACGGGGACAGTGGGTACCATGTCTTTAGTAGTTGGATCTCGTCTAAAGCCCGTCTTTTTTATTGCACAGTCTCATCTCCACCGGACTGTAGAATTGTGTACAGATTTTCCGTGCCAAAATTTGTGATAATTTTCACTCCCCCTCTTATTACGCTGTAGGTTTTTGTTGtcaattgtttgttttttctttttcaaacatACTTTGCTGTGACGTTACATAGATTGCTATGTATGTAGTATAAATGTTGCTATAACAAATGTGTTTGGTAGCAGATtgtcaaatattaaaatttaaacttaataaaaagACGGACGTCATACTGTATAAACCCTCAAGGGCCAAATTATGTATATTAGGaggttcataaaaaaaactattaaataacaaaaaaatacacaaactgcCACTTTTAAGTACACTACTacatataggtagatagaaaaaATAGGCATGTTGATGTTGCAAGAAGCTGTAAAAAAGCTACAAGAGAATCATCCATTCGGTGCCATTGTAGTTGACATGACGCGACTGTAAGCCGTCGATTTCTTCTCTGGTTTATTAAGATGCTAATGATGAATAGTTTGAATGTTTCCTTAACGGCTGTGATGTTCCTGTTCTGTTTTACgctcttagatttttttttttttttttttttttttttgcttaattttattttatttttgctttatttttttgtttgttttccattATTTGAAATGGTTCCCAAACCATGTTTTTGTAATGAATAAATGTTTATGCTGTACAGTCTCTGTAGCATGCAGTTCTGTATTAATAAAAGCGACTTAGTATGTGCA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060729 intestinal epithelial structure maintenance biological_process
GO:0044333 Wnt signaling pathway involved in digestive tract morphogenesis biological_process
GO:0007420 brain development biological_process
GO:0048699 generation of neurons biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46475 lncRNA downstream 61760 5191033 ~ 5193859 (-) True G34556
TU46458 lncRNA downstream 103206 5151372 ~ 5152413 (-) True G34543
TU46460 lncRNA downstream 104656 5150310 ~ 5150963 (-) True G34544
TU46457 lncRNA downstream 111563 5143724 ~ 5144056 (-) True G34542
TU46456 lncRNA downstream 112284 5143072 ~ 5143335 (-) True G34541
TU46666 lncRNA upstream 28631 5391095 ~ 5391320 (-) True G34682
TU46673 lncRNA upstream 211009 5573473 ~ 5574758 (-) True G34688
TU46695 lncRNA upstream 282442 5644906 ~ 5645105 (-) True G34708
TU46700 lncRNA upstream 296560 5659024 ~ 5659904 (-) True G34713
TU46707 lncRNA upstream 314954 5677418 ~ 5681939 (-) True G34719
XM_007259211.3 mRNA downstream 89994 5163950 ~ 5165625 (-) False LOC103030716
XM_022669411.1 mRNA downstream 90002 5163950 ~ 5165617 (-) True LOC103030716
XM_007259207.2 mRNA downstream 92153 5160908 ~ 5163466 (-) True LOC103029658
XM_007259206.3 mRNA downstream 130421 5099991 ~ 5125198 (-) True entpd1
XM_022668935.1 mRNA downstream 142651 5099968 ~ 5112968 (-) False entpd1
XM_022668946.1 mRNA upstream 38464 5400928 ~ 5571634 (-) False vti1a
XM_022668948.1 mRNA upstream 38464 5400928 ~ 5571634 (-) True vti1a
XM_022668947.1 mRNA upstream 38464 5400928 ~ 5571633 (-) False vti1a
XM_022668949.1 mRNA upstream 38464 5400928 ~ 5571633 (-) False vti1a
XM_022668952.1 mRNA upstream 216866 5579330 ~ 5596438 (-) False acsl5
TU46045 other downstream 1372150 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1466427 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1466513 3783408 ~ 3789106 (-) False prr15l
TU45988 other downstream 1466555 3783125 ~ 3789064 (-) False prr15l
XR_455628.3 other upstream 545510 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 573371 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 1102904 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 1174557 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 1257216 6619680 ~ 6653585 (-) True G34981

Expression Profile