RNA id: XM_015608399.2


Basic Information

Item Value
RNA id XM_015608399.2
length 2209
RNA type mRNA
GC content 0.45
exon number 11
gene id zdhhc6
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5573465 ~ 5579442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGACTTTGGGTGGgatattttgttggacctggcaacacTGGATGGGGGGAGAGCAGAAAACAGTAGGAAGTAGCGAGACGAGATGGATGACCTGCTTCTAGTTGGAGAGTAAAGCTATCAGGTGACCAGAGAGAAAGAATGCCACGCACTAGGAGAGCCTACGACTGTAAAACACAGACGGCTCCTGTGACTCCAGACACAGCTGACTGCTGGATGTTTCGGAGAAGACAGAAAATCCATCTTTTGTTTTcctcatttttaatgcattccattagagagagacagcacaTCTAAATCTACATTGAATTTTTTATTGCTTCAAGGaacttttgggggaaaaaaagctaCACAATGAACATCCTCTCAGCCATTATCGTATTCGAAAACCTCCATGAGGTTAGGCGGCTCTGTCACTGGGGTCCGATCATTGCACTTACTGTCATTGCTGTGTGCTCATCCATGGCCATGCTGGACTCAATTATCTGGTACTGGCCCTTGGACACCACAGGCGGCAGCATTAACTTCATTATGCTCATCAACTGGACGGTCCTGATTCTCTACAACTACTTCAATGCCATGTTTGTGGGCCCTGGATATATTCCTCTAGAGTGGAAACCGGAAAATCAACAAGACGCAATGTACTTACAGTTTTGTAGAGTGTGTCAAGGTTTTAAAGCTCCAAGGTCTCATCACTGCAGAAAGTGCAACAGgtgtgtgatgAAGATGGATCACCATTGCCCATGGATCAACAATTGCTGTGGACATCTGAATCATGCTTATTTCACTACATTTCTCCTGCTGGCCCCATTGGGATGCATACATGCTGCTTTCATCTTTATTATGACAATGTACACTCAGCTATATGACCGGATCTCTTTCGGCTGGAGCTCAGTAAAGATAGACATGAGCGGTACGCGACACATCCACAATCCTATAATGCCGTTCAGTGTGGCAGCTTTTGCAGCCACCCTCTTTGCCCTGGGTCTGGCACTTGGCACCACTATTGCTGTGGGCATGCTGTTTTTTATACAGattaaagtGATTATGCGAAACAAAACCTCAATTGAAGTTTGGATTGAGGAGAAGGCCAAAGACAGAATCCAATACTACCAAACTGGAGAGGAGTTCATCTTCCCCTATGACCTGGGTAGTCGATGGGAGAACTTTAAGCAGGTGTTCACCTGGTCTGGAACCCCAGATGGAGATGGCGTTGAGTGGCCTGTGAATGAGAAGTGCCACCAGCATACTCTAACTATTGAGCAGCTGAAACAAAAAGCAGACAAGCGAGTGAGAAGTGTTCAGTACAGAGTTGTGGAGGGCTATAACGGGGCTTGCTGCCCACTGGGTAAAGGAATAAACACGTTCCTTAGGACACCCTGTACAGAAGAACCCAGGATCCATCTGACTAAAGGAGAGACCATCTTTGCCACACGAGGAACGAAGTGGTGGATGTATGGGGACAAAGTTTTGGATGAGGAACAGACaaaagCTGGGGTTCGTGTTCGAGGTTGGTTTCCACGCCGTTGTGTGGAGAAGTGTCTCTACGACTCTGCCAACAACACAACGACAGATGAAGAGAAGAAGGAACAGTAACGTGAGGACTGACTGACAGTGCTCTGCGCTGGGTACGCGAGAGTACGTCCTGTGCTCTTATTCTACTGACTGGGCGCCTTCTTGTACTTCTGTTCATTGCCAATGCTTGAGATACCCATGTTACAGGAAGCAGATATGCAATTATCTGAGCGTTCCAGGgttgtgtgttttctctctggAACGTTTTAAGGGCAGTTCTAGTAGGTCTGCACAACCAGATGCTAAAGCAAAGAACTCTATAAAAACCAGCAAATTCTGCTTCCTTAAGTGAACTTGTGTACCTCTGTAACATCTCCAAAGACGAGCTGATAAATGAATGGTGGGTGGGAGGGAAACCATAATTTTACACTGAGCTGGTAATCGGGGGGCGTACTATACTGAACGTTTACTTGAATTagttgttttctctctttctctttctcttttctctcttgatGTCCACACTGTTTATGCAATGCCTTTGCCAGTTGTAACAAGTTCTTAGTCATGCAATTTCTCTGTATTCTTTGTagagaaaaatactttaattttatttttgattatttttgtaaaactgaTGTCAACCTCACAATACAGATTtcaaaaacaagtaaacaaatctTCTCTGAACAATAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46514 lncRNA upstream 1784 5400955 ~ 5571681 (+) True G34587
TU46501 lncRNA upstream 187287 5385883 ~ 5386178 (+) True G34580
XR_002649854.1 lncRNA upstream 274444 5209468 ~ 5299021 (+) False LOC111192354
XR_002649851.1 lncRNA upstream 302462 5209468 ~ 5271003 (+) True LOC111192354
XR_002649852.1 lncRNA upstream 302462 5209468 ~ 5271003 (+) False LOC111192354
TU46543 lncRNA downstream 79527 5658969 ~ 5659199 (+) True G34605
TU46544 lncRNA downstream 79824 5659266 ~ 5659902 (+) True G34606
TU46540 lncRNA downstream 113098 5692540 ~ 5711855 (+) False dnmbp
TU46556 lncRNA downstream 160172 5739614 ~ 5742444 (+) True G34615
TU46539 lncRNA downstream 209316 5788758 ~ 5793818 (+) True G34602
XM_007259208.3 mRNA upstream 414768 5147340 ~ 5158697 (+) False aldh18a1
XM_007259209.3 mRNA upstream 414768 5147340 ~ 5158697 (+) False aldh18a1
XM_007259210.3 mRNA upstream 414768 5147341 ~ 5158697 (+) False aldh18a1
XM_015608381.2 mRNA upstream 414768 5147520 ~ 5158697 (+) True aldh18a1
XM_022668936.1 mRNA upstream 473762 5087009 ~ 5099703 (+) True LOC103044692
XM_007259243.3 mRNA downstream 16639 5596081 ~ 5607391 (+) True LOC103039360
XM_007259244.3 mRNA downstream 16639 5596081 ~ 5607391 (+) False LOC103039360
XM_022668950.1 mRNA downstream 36253 5615695 ~ 5641795 (+) False gpam
XM_022668951.1 mRNA downstream 38564 5618006 ~ 5641795 (+) True gpam
XM_007259239.3 mRNA downstream 62875 5642317 ~ 5653677 (+) True LOC103038312
TU46176 other upstream 1395382 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3516591 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 3735889 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4185446 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4451593 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 1040228 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 1040229 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 1151512 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1322975 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4893932 10473374 ~ 10474792 (+) False G35744

Expression Profile