RNA id: XM_007259249.2


Basic Information

Item Value
RNA id XM_007259249.2
length 6997
RNA type mRNA
GC content 0.46
exon number 44
gene id nrap
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5771619 ~ 5803122 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGACCAGAGCTAAGTTTAACACAGGTCAGAGAGTGAGACACAAGTGGGAACAGGGGACTAACTGGGACGCTTTGCCTTCCCGTTCTGTGGACTGTCCAAAGCTACTGATTTTTTAGAGAATTGGTATGCCGAGTTGGTTTTCTCTGTAGTGACGGATCCAGTGGGGAAAAACTAAACATGAATATTCAAAACTGTGCCAGGTGTGGGTTTGTGGTGTACCCAGCTGAGAAGATCAATCTCATTAGTCAGAACTGGCACAAAGCATGCTTCCACTGTGAGGTCTGTAAGATGGTTCTAACTGCCAATAATTTTGTAAGCCATCAGAAGAGACCGTATTGTCAAGTACATAATCCACGGAACAACACCTTCACCAGCGTCTATGAAACTCCGGTCAACATCAATGCTAAGAAGCAGGCAGAGGCTGTCAGTGAGATTAAATACAGAGAAGAGGGTGAGCGTTTCATGTCCACGTTCCACTATGACATGAGATCAAAGGAACTTGAGCAGGCCCGCAAGGCCAGCCAAATGACCAACCAGGCTTACCAGTCTTTAGGGTTTTCAGAGCAGCAGACATGGTACTCAGGCAGTGTAACCAGTCAGGAGATAGTTCGCATGAGTCAAGCACAGAAGACCATCAGCGATGTGGAGTACAAACGGGGCCATGATGAACGAGTTACACAGTTCACCTCTGTGACTGACACACCTGGAATCCTGCACGCTAAGAGTGGCACCTCACTGGCTAGTGATGTGAAGTACACAGAGGTTTATGAGCAGTCCAAAGGAAAAGGCAGCTTCCCTGCTATGCTAACTCCTGGATATGAAGTGGCCAAGAAAGCAAATACTCTTGCTAGCAATGTGGAGTATAAGAAGGGGCATGAGGAGAGAGTGTCAAAGTACACCACTGTGACAGATTCCCCTGAAGTGCTCCTGGCTAAAAGCCAAGGGAGGATTGCAAGCGATTTTGTCTACACTGAAGATTATGAACAGCAGCGAGGTAAAGGAAGCTTCCCTGCCCACGTCACTCCTGGATACCAAACAGTCAAGAAAGCAAATGAAATGGCCAGCAAAGTGAAGTACCAGCAGAAGTATGAGCAGGAGATGAAGGGTAAAGCGAGTACAGATGCTGGAGCTGCTGAGTTTGCGCTTGCCAAAGAAAATGCTGAGAAATTCAGCCAGCATGCCTATACTGAGGAATATGAGCAGCAGAGAGGCAAAGGAAGCTTTCCTGCTATGATCACTCCTGGATACCAGATGGCCAAGAAAGCCAATGACATTGCCAGCGATCTGAAATATAAGAAGGACCTGAACAAGATGAAGGGCTCCTCTGCCTATCACAGCCTGACAACTGATGACAACCTGACTCTGAAGAACGCCTGCAAGATCAATAAGCTTGTCAGCGAGGTTGAATACAAGAAGGACCTTGAGAACACAAAAGGACACAGCATCAACTACTGCGAAACACCCCAGTTTAAAAATGTGTCCAAGATCGCCCAGTTCACCAGTGATAATAAATATAAGGAGAAGTATACCAGTCACATGAAGGGTCATTATGAGGGGACTGGAGTGGACAAGAAAACTGCACATGCCATGAAAGTCAGAAAGCTGGCCAGTAACattgcATATAAGTCAGACTATGAGCAGGAAAAGACAGAGCAGGGGGAGTACAACTACCCAGCTGACATCACCCCATCTTACCAGACCCAGAAGAAACTGGAGCCTCTGAAAGATAAAAATTACAGACAGCACATTGACAAGCTGAAGTACAGCCAGGTGACAGACACTCCAGATATCATTCAAGCTCGAATCAATGCTCAGCAACTGAGCAATGTGAACTACAAAGCCGATTATGAGAAAACTAAGACCCAGTACACCATAGCTCAAGACACGCCTCAGCTCCAGAAGGCCAAAGCCAATGCTGAGCTTATCAGTGATATTAAGTATAAAGAGGAATGGGAGAAAAATAAGTCTAAAGTACATGATGTTGGTGCGGACACACTGACCTTAAAAGCTGCCAAAGCCTCTAGAGATCTGGCCAGCGATATCAAATATAAGGAATTGTTTGTAAAGAACAAGGACAAAGCAGTGGGTGTGAATGTGAGTGACTCCAAAACCCTCCATTGTCTCCAAGTGGGGAAGCTGAACAGTGAGATTGCCTATAAGAAGAATTCAAAGGAGACTCAGGCTAAGTATAACCTGACGAAAGACATGGTGAATCTAAGCCATGCGAAGAAGGCCCAGGCCCTGGCCAGTGATCTGGACTACAGGAAGAAGCTCCACGAGTACACCATCCTGCCTGATGACATCAAAGTTCAGCAGGCTAAGAAGGCCTACAACCTCCAGAGTGATAACCAGTACCGATCTGACCTGGTCTGGATGAAGGGAGTGGGCTGGGAGGCTGAAGGCTGCCTGGATGTTGAACAGGCCAAGAAGGCTGGAGAGCTTCTGAGCGATAAAAAGTATCGGCAGAAGGTGGACAGTGTAAAATTCACCCAGGTGGCCGACACCCCATCCATACAACATGCCAAGAAGAGCCAGGAACTACAGAGTGATctGACATACAAGGCAGGTACAGAGCAGATCATTCATCAGTACACTGTGAGCAAAGACGAGCCTCTCTACAAGCAGGCCAAAGCTAACGCGGAGCTTCTCAGCAATAAATCATATAAGAGTAGCTGGGAAGCCCAGAGGGAGAAGGGCTTTGAGCTGAGTATGGATGCACTGTCTATCCTCACTGCCAAAGCTAAGAGGGATCTTGCCAGTGATGTGAAGTATAAGCAGCAGTATGAGATGACAAAGGGGAAGATGATAGGGGTGAAGAATGTAACAGATGATTCTCACTTGGCCCACTCAGCTCTGGCCACTAAGCTCCAGAGTGATCGCAACTATAAGAAAGAGTACGAGGATACTAAGACCAAGCACAGTGCCTCGCTTGATATGATGACCATCAGCCATGCTAAAAAGGCCCAAGACCTGGCCACAGAGACCAACTACAGAACCATCCTGCACGAGTACACCACCCTGCCCAGTGATATGAAGGTGGCATGGGCCAAGAAAGCCTACGGCCAACAAAGTGATAAAAAGTACCGCTCAGATCTGAACTGGATGAAAGGTGTGGGCTGGGAGACCACTGGATCTCTCGATGTGAAGCAGGCTAGGAAAGCTAGTGATCTCGCCAGTGAGAAAAAGTACCGCCAGCATGTTAGTGCTCTGAAGTTCACCAGCGTGGAGGACACGCCAGAGATGGTGCAGGCCAAACTCAGCAATAAGCTGGCACTAGACAGGCTGtacagagagaaaggagagactGAGAAGCACAAGTACACAATGACAGGAGATCTGCCAGAGCACGTGCAGGCCAAGATGAACGCTAGGAACATCAGTGAGTCACGATACAAAGAGTCATGGATGAAGCTCAGAGATGGGGGCTACAAGCTGCGCTTGGATGCTATTCCATTCCAGGCTGCCAAATCCTCAGGGGAGGTGCTCAGTGATCAAAAGTACAAAGAGGAGTTTCTGAAGATGAAGGGTAAGATGATCGGGCTGAAAGCACTCCAGGATGACATCAACATCGCCCACTCTGTGCATGCCAGCCATCTACAGAGTGATATCAAATATAAGAAGGATTCTACTAAGGTGCACTCTCAGTTCCACCTACCGATGGACATGCTGGAAGTAGCCCATGCTAAGAAGGCCCAGGCTCTGGTCAGCGATCAGGACTATAGAATGACCCTAcacaactacactacactgcctGATGACCTAAATGTGCAGGCTGCTAAGAGAGCTTATTCTCTGCAGAGCGAGaaaGCCTACCGTTCTGATCTGAATTACCTGCGTGGTGCGGCCTGGATTGCCACCGGCGCCTTACAAATCGAAGGCTCCAAACATGCAACACAGCTGATCAGCGATAAAAAGTATAGACAGCAGCCGTACACATTTAAGCACACATCAGTTACAGACTCTCCTGACATAGTTCACGCCAAGCTCAGCAACAAGCTCACCAACGAGCGTCTATACAAAGAAAAGGGTGAGAACTTCAGGCATAACTACACAATCACAGCTGAGCGACCAGAAATCACCCAGGCCAAGATCAACGCTGCTAATTACAGTGATACCAAGTACAAAGAGTCATGGCACACGCTGAGAGCACAAGGCTATAAACTGACCATGCAAGACATCCCCTTCCAAGCAGCTAAAGCATCTACCGACATTGCCAGTGATTACCAGTACAAGCACAACCACGTCCTGGAAAAAGGCAAGCACATCGGAGCACGGAGCATCATGGATGACTCTCACCTCCTGCACTGCATGCAGACGGCACATCTGCAGAGTGATAAGAATTACCGTAAAGATGCTATTGCCACCAGCGGCCAGTTTCACCTGGGAATGGACCTGGTTAACCTGGTCCACGCTAAGAAAGCCCAGTCTCTGGCCAGTGATCAGGACTACAAGACCCGCCTGCATTCCTACACTGTCCTGCCTGATGACATAAAGGTGCAGTGGGCCAAGAAGGCCTATGAGCTGCAGAGTCAGaATGCGTACAAGTCTGATTTGAACTTCATGAAGGGAGTGGCATGGGATTCAGTAGGAGCTCCTCAGCTGGAGTCTGCAAAGAAAGCAGGAGAGCTCATCAGCGATAAGAAGTATCGTCAGCTTCCTGACAGGCTGAAGTTTACCCAGGTTGCAGACTCACCTGATATCATTCATGCTAAGAACAGCTACATGCAGTGTAGTGAGAGGCTGTATAAGTCTGGAGATTCTGACTCCATGCATAAGTACACCTTACATGCTGATCACCCCGACTTTATCAGAGCAAAGATGAACGCTCAGCAGATCAGTGATAAAGTCTACAAGGCATCAGGAGATCAGGTGAAGACTGCAGGATATGACTTGAGGCTAGATGCCATTCCCTTCCAGACAGCCAAGGCCTCTAGAGAAATTGCAAGTGATTTCCGCTATAAGGAAGCCTTTGTGAAGCAGAAGGGTCAGCAGGTGGGTCTGCTCAGTGTAGAGGACGACCCCAAGATGAGGCACTCGCTGGCAGTAGGCAAACTGCAGAGCAACAACGAGTACAAGAAGCAGTTCCAGGAGACCCGCTCCCAGTATAAGATCCACGCAGACCAGCCTGAATTCCTGCAAGCAAGGAAGAGCCAGGCTCAGGCCAGTGACCTCAGCTACCGCCAACGCCTCCACAACTACACATGTGACACAGAACAGCTCAACTTTAAACACGCCAAAGAGGCCTACAAGCTGCAGAGTGATGTGAAATATAAGTCAGACCTGAACTGGATAAAGGGAGTTGGCTGGACTCCTCCGGGCTCTCATAAGGTAGAGATGGCTCGGAGGGCAGCAGAACTTGGCCTGGCTGATGGAGTGGACACTGATGAAGCTATTGCGAAGTACCAGCAACTAATGATGTTCCAGCGCGAGCAGCAGATgctagagcagcagcagcagcagcaggacttCTCGGATCAGGTGGAAACTGAAGAACATGTCGAACAGTCTGTGGTCAATCCAGATGCCATGGAGATCCTCCATGTGAAGAGAAAGAAGACCATCCACACTACTTTCAAACAAGCAAAGACTATGACATCGCAGTCTGTAACATCTCACTCTTCTACAAAGCAGTCCACCGAGAGCCAGCACAGGTCCATTACAGAGAAATCCACTGAAAACAAGTCCATAACGATGTAAGCCCaaattattacatatttaaattattacatatttaaggATGTGATGTGGAGCCTGGTGTTCCTTGCCAGTAGATCATAGCAAGATTGATGTAGGTTATATGAAACCAAATAAATGAACAGAgtatgtaagtaagtaagtaacaGAAGGGTGAGGATAAGATGAGTGCAGAATGGAAATGTGTATGTGTCTAATGGTCATATAAGGTAGGGGTTGCACAGGTAGTAATTTTTAGTTGTATTTGAATAGTTATTCAAAAAAAGGAGTGAACTAGTCGTAACTCCCATAGCAAATCCTGattcaaaaataaatgtgttgtgttgcaatttattttttttttctttcccattaGCATGGTTTAATACTGATGGACAACAGCAATGAATGCATCAAATCTTAATTCACATTCTAGCTAAATACAGCTccaaattaaattgtttaaaaaaaaaaaaaacatatgcaaaGAAATACAGCTGCACAGGTTCTTACTTTACACCTCGTCTCTCACAGTGGATATTTAAACAGTGATATGAATGTTGTATTGTTCTGTTAAATTATCTTCCTTAAGCAGTCAGTAACTATATTTTACTCACTTTCAAGAATCCTCACAGCTCCATAGCGCAATATGCTCATTGCTCTGTAGTGAGTGAGACACTATGACCTCTTATCTCTGTGGAAATACTGGCTTTTAgaggcagtattttttttactgcagttagtagttttttgtaatttggctcaaaaaagtgcattgctgctgttttttttttctccttctgacTTATCGACAGCTCCACGCCGCAGCCACTAGTGGATGTCCTGGTAGACTAGTCGATTAGTCTGTGCAACCCCTAATATAAGAAGAATATTAATGAAGGAAATATTTTGGAAAGAAGAATATTTTAGAAAGTGTATCGTGCAGGTGCAGAAATTGTGGACTTTTCATGGTTTATTGTTCCTATAGTGAAGACATAAGTgcctttcttgttttttttcctattaaTTAATCTTGTTTCTtcattaaagggaaaaaaaacatattttaaatagtgatgaaactttatttaacattgccattctgtagaaagaaaaaataaacaaatgactgCTGTGAAAAGTCACAGGTGGACGAATAACTGTTTAGACTGCCAAcggcagaattgttatatttcaGATATATTTGATATACTGTATGCCTGACAGGTTCAGCTTTGTGAATTAAGAGTTCCTGCTTGATGTATGATTTATGATCATGAAATCTAGAAATAAAGGTTTTGTAGAAGCTGCACAGCAACTTGA

Function

GO: NA

KEGG:

id description
K24421 NRAP; nebulin-related-anchoring protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46707 lncRNA downstream 89680 5677418 ~ 5681939 (-) True G34719
TU46700 lncRNA downstream 111715 5659024 ~ 5659904 (-) True G34713
TU46695 lncRNA downstream 126514 5644906 ~ 5645105 (-) True G34708
TU46673 lncRNA downstream 196861 5573473 ~ 5574758 (-) True G34688
TU46666 lncRNA downstream 380299 5391095 ~ 5391320 (-) True G34682
TU46759 lncRNA upstream 59335 5862457 ~ 5867932 (-) True G34760
TU46770 lncRNA upstream 83916 5887038 ~ 5891991 (-) True G34765
TU46774 lncRNA upstream 124567 5927689 ~ 6012669 (-) True G34769
TU46809 lncRNA upstream 239803 6042925 ~ 6043439 (-) True G34791
TU46833 lncRNA upstream 245884 6049006 ~ 6052438 (-) False ablim1
XM_022668954.1 mRNA downstream 84460 5600368 ~ 5687159 (-) False tectb
XM_022668953.1 mRNA downstream 84461 5606621 ~ 5687158 (-) True tectb
XM_022668952.1 mRNA downstream 175181 5579330 ~ 5596438 (-) False acsl5
XM_015608339.2 mRNA downstream 175181 5579330 ~ 5596438 (-) True acsl5
XM_022668948.1 mRNA downstream 199985 5400928 ~ 5571634 (-) True vti1a
XM_007259251.3 mRNA upstream 15600 5818722 ~ 5822431 (-) True LOC103041412
XM_007259256.3 mRNA upstream 39856 5842978 ~ 5852808 (-) True dclre1a
XM_007259261.3 mRNA upstream 100466 5903588 ~ 5928154 (-) True ccdc186
XM_022668970.1 mRNA upstream 125439 5928561 ~ 5934694 (-) False LOC103043680
XM_022668969.1 mRNA upstream 125439 5928561 ~ 5934690 (-) False LOC103043680
XR_002649848.1 other downstream 409134 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 1888150 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 1982427 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 1982513 3783408 ~ 3789106 (-) False prr15l
TU45984 other downstream 1982555 3783408 ~ 3789064 (-) False prr15l
XR_455628.3 other upstream 104852 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 132713 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 662246 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 733899 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 816558 6619680 ~ 6653585 (-) True G34981

Expression Profile