RNA id: XM_022668960.1


Basic Information

Item Value
RNA id XM_022668960.1
length 3588
RNA type mRNA
GC content 0.41
exon number 8
gene id casp7
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5807162 ~ 5819997 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGCGACCGTTTGGACTGGAGCTGCTCAGAACTGCCGTATAACTACATAATTTAACTAGCAGCTTTGGGATGGAGGGAGACACTTTGCCTGATAAAGCTGAAGTGAGTAAGAAAGGGAATGAGAAGGGAGGAGAAGGGGACGCAACAGATGCTCCTAAACAAAGATTACCGGAACCTGTTGGCGGGACAGATGCAGAAACTAAACTGCCAGATGAATACTCTgaggagagtgaggaagaggacACAGTTGATGCAAAGCCTGATCGAAAAGGGAGATTCATCCTTTTTGGATTTAAGAAGAATAAGGATGGCAAGTTGCGGGACAAGGACCATTACAGGATCGTTTCACCAGCATTCCAGTATAAGATGAGCCACCGGCGAGTGGGCAAGTGcatcatcatcaacaacaaGAATTTTGATGAAAAGACAGGGATGAATGTTCGCAATGGCACAGATCGGGATGCAGGAGAGCTGTTCAAGTGCTTTAAGAACCTGGGATTTGATGTTTTCGTCTACAATGACCAGACCTGTGCAAAAATGGAGCGGTTGTTGAAAGAGGTCTCAGAGGAGGATCACAGCGACAGCTCCTGCTTTGCCTGCATTCTGCTAAGCCATGGGGAGGAAGGCATGATTTATGGAACAGATGGGGCGATGCCCATCAAGAGCATGACCTCACTCTTTAGAGGAGATATGTGCAAGAGCCTGGTGGGCAAACCCAAGCTCTTCTTCATCCAGGCTTGTCGAGGTTCAGAGTTTGATGATGGCATACAGACTGACTCAGGACCACCCAATGACACGATAGAAACGGACGCAAATCCTAGACACAAGATCCCTGTGGAGGCAGATTTCTTGTTTGCCTACTCCACTGTTCCAGgTTACTACTCATGGAGGAATCCAGGCCGAGGGTCTTGGTTCGTTCAGGCCCTCTGTAATGTCCTCAACGAGTTTGGCAAGCAGCTGGAAATCATGCAGATACTCACACGGGTTAACTACATGGTGGCGACCAACTTTGAGTCCTGGTCTGAAGATCCTCGCTTCAGTGAGAAGAAGCAGATCCCCTGTGTGGTCTCCATGCTGACCAAAGAGCTCTACTTCAACTGATGACTGACTTCCCAACAACCTCAGACACCTACAGCCTTTGCACGCTCAGATTTTTACAAAGTACATAGATTTCCATGTCATGTTTTaccactttttattttgcttctgACCAGAACTGATGCATCATGCTGCCtgtcttatatatttttgtaattttagagACCTTTTTAGAGATCTTTTTTGGAAATTGTAACCCTTTATTTTTTGCAGCATAAATTTCTGCATGGCAGGCAGTACAGACACatcagactgactgactgacagatGTTACCGGATGTTCACAATATTCAGGGATGCTCCAGACCCAGCTGGAAACGGTGTTGTTTGTGCGTGAAAGCAATTTATTTCCAACGTTACTCTGGGCACTTTCTTTGCTCTTTTAGTTATTCCATGGAACACTGATGCCACTGTTCTTTGTCTGCTGGCAGTGTGAAATATCCATGTCATTTTGCCAACTTGGAAGGTTTGCTGCCACAGTAGGTGAGGAATTGGAGCATGTCGATATTCTTTTAGAAATTTCAGCTGGGTTAATAAGCCCAATGAAACATgtgcaaatgtacagtatatataaaaaaataattaccacTACAGTAAGAGGCTAAATACAAGGTGAATCCTGTGTCTGAAAGGGGCCGTTACTAAACTGTAGTTTAATTCGGTAAACTGGTAAGCATTATTTCTTTCTGCTCACAACTGAAGCAGATAGCATTCATACCCATCACAAATCACCAGAATGTATTACTCTGCCCTCTGTAGGATTGAACTGTAAGGGCTGTAAGTGGCTGTTTCCATGGTGAAATACCTCCTTTGTCAATACAAATTTTATCACTCATATAGTCTAAGATGATGAAGTCGGCAGTAAAACACCActagtttttttattgctcGTCTTTTTAACTTTGAACAGAGCAGTCTATGAAATTTTATCAGTGTCCTGTTCTGACATTTCTTCAGTTGTGGGTCCTTCATTTTGGCCTACAAATATTAGGGTCTAATGTGAAATGTGAATGATGCTTTTTAGGATAGTGTACCATGTAATTTGCACCAGAACTATAAACCTAAAGCACAAGTAGCTATGTGTTTGATTTCAGTTCGGTTGAGGTGGTCTTAGCAGGACTGTGGTAGATGCTCGGAATGGATTGCACTCAGTGCTGGTGAGATGTAGCAGTTTTTGCAACAGAGAAAGGATACTCCAAGCAGGACACAGATGACTGCTTTACTTCTTCTTTTATTAGTAAACTCAGTTCCAACTGCCAAGTCTCTAAAGTAACAAACAGAGGAGGAACGCCCAATCAACTCACACATCATGTGCAAAACTCTCAGTAGCAGCCCTTCCCCTCATTAGATTGATGTCTTTGATTGGCTGACCTTCCTAACAAGGACAGTGAAagggtgttaaaaaaaacagaagaaacatCAAATTGGTGTATCTCCCCTTTAAAAAGCACACTACTTGAAGAAAGTAAtcatttgttttgttctttccATAAAACTTACTTGATGTTCTGTCTTGAATCCAGTTTATAATCTACACAGGCAGCTACTGTATTACTGGTGACACATGGACCAATGCTGCAGTAGTATTGCAGTAAGGCTAGGGTCATCTGAGAGTTTCAGAACCAGCTGCATTAGCTGCGTTTCCTTCCTTCTTTGAGTTGTAATTGTACTTTCATCTGCTTCAGTCATACATTCACTTTTCTTCTGGATCACAGTCAGTCTGAAGTAAAGCTGCAGAGAGTGTGAAGCAGACAATACTGTCAGTGATTTAATCAGATTCTAATGGGACATAATCATGATCACCCTTCTGTTAGTGCAGCATTTCTCAATCCTCCCCTCCAGGACTGAGAAACACAGTGTATATGGAACAGATAAAACTGTCAATCAACTCAGCTCTCAcgctatctctctcttcctatTTATTacagctgtcaatcaaaaaccATATTCATTGTCCTTTACTGCGTGTCAAATTACATGCTAAATGGACCAACAGCTCCAAAAtaactttcaataaaatattttttacttcctttcttttttcccttttttcctgtaaagttgaggtttttggagatacaaggtttttgttcATGTGACAGCAAGTGCATATATAAATAGATTAATATatagatagagagtgagagatagagattaCCTCTTAGTGATGTAGTGCCCAAACTGTACCGAAGGGAGTATTTGCTCTACTTGTATTGGAATGGAATTTaagggaaaatatatatattttaagaaaaaatccttttaaatgatttacagtgttaaatgaaATTGTCCTCAGGAATATATGAAATGATTTGGAACATTTTTTGGGATATGAAATGCcctctaaaaatgtaaaaatatttttgatcaCTGCCATACTTTTTGCCCCTTTTTTGGAATTCGGGGCTATGTTTTGTTTAAGTGACTTCACATGGAGAGAATGCCTTTGTAAACcttattttgttgtattaaaaaataaatacata

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46539 lncRNA upstream 13344 5788758 ~ 5793818 (+) True G34602
TU46556 lncRNA upstream 64718 5739614 ~ 5742444 (+) True G34615
TU46540 lncRNA upstream 95307 5692540 ~ 5711855 (+) False dnmbp
TU46544 lncRNA upstream 147260 5659266 ~ 5659902 (+) True G34606
TU46543 lncRNA upstream 147963 5658969 ~ 5659199 (+) True G34605
TU46590 lncRNA downstream 24905 5844902 ~ 5847925 (+) True G34636
TU46601 lncRNA downstream 94244 5914241 ~ 5916402 (+) True G34644
TU46622 lncRNA downstream 146691 5966688 ~ 5967194 (+) True G34657
TU46808 lncRNA downstream 222849 6042846 ~ 6043340 (+) True G34790
TU46881 lncRNA downstream 435609 6255606 ~ 6258050 (+) True LOC103045604
XM_022668957.1 mRNA upstream 35285 5765856 ~ 5771877 (+) True LOC103045303
XM_022668956.1 mRNA upstream 42280 5758072 ~ 5764882 (+) True LOC107197899
XM_022668955.1 mRNA upstream 51046 5692522 ~ 5756116 (+) True dnmbp
XM_007259238.3 mRNA upstream 122999 5669067 ~ 5684163 (+) True cpn1
XM_007259239.3 mRNA upstream 153485 5642317 ~ 5653677 (+) True LOC103038312
XM_015608337.2 mRNA downstream 4391 5824388 ~ 5828009 (+) True LOC107197901
XM_022668961.1 mRNA downstream 4391 5824388 ~ 5828009 (+) False LOC107197901
XM_022668962.1 mRNA downstream 9637 5829634 ~ 5841843 (+) True plekhs1
XM_022668963.1 mRNA downstream 9639 5829636 ~ 5841843 (+) False plekhs1
XM_007259255.3 mRNA downstream 11010 5831007 ~ 5841843 (+) False plekhs1
TU46176 other upstream 1629079 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3750288 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 3969586 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4419143 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4685290 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 799673 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 799674 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 910957 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1082420 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4653377 10473374 ~ 10474792 (+) False G35744

Expression Profile