RNA id: XM_007259256.3


Basic Information

Item Value
RNA id XM_007259256.3
length 3517
RNA type mRNA
GC content 0.45
exon number 9
gene id dclre1a
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5842978 ~ 5852808 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATGTAACAGGACTCATGTTTACAGTAGTAGAGGGatatttaactaaataaacGAGTTATAAATGAATCTGCCAAACGATAACAATGTTTTAATTgaaatgtgtgtctgtttgtgtttaaCGTTATGTTTAGCTGTTTAAAACTGTAGCTAGGCTAATGGTAGAGCTGCTGTTATTGGTGGCTGCTGGTGTGAAATGTCACAGAGTAACTCAGAAAGTGATATCTGGGAATATAAACCTCTTAAAAAGaccaaaagacaaaataataagTCACAAAAATGCAGCGAGTCCGCAGCAAAGAGACAGAGGGTGAACAAGCAAGGGAAGgcaaagaaacagacagaagaTCAAAATGCCAAAAACAAGGGCTGTAATGGATCTTCCACCAGGAATCACCTGCCCGAGGAATCTGTACAGAACACCAGTATAAACGGATCACTGACCACAGACCCTGAAACACAGGCTGCTGCTTCTCCTGAGGGTGATACAGAAAGCCAGGGGTACTGTCCAATCTGTCAAATGCCtttttctatcttggtggtCCAGTCTGAACGGTGGCATGTTGCTGAGTGCTTGGATACCCCTGGAGAAACTAGTAAAGAATGCCCATTTGGTCTTCAGTGCTCTTCGTCCATTCCAAATCATTACAAGAGATACTGCCACTCTCTTTTAGCTCATAGTCGAGCAATAAACAGCCCAGACTCAAGACTAGCCCCCTCAGACCAATCACATCTGGAGCAGACATTGTATGTCAGTGATGCCATCATCTCTAGAAAAGAGAGCTCGGTGGACAGTGCGGTGAATCTCTCTTCAGTGTCCAGCCAGAGTGCCTCTCCTAGTCATGGATCCAAGCAATCTTGTACACCTGTTGGTCAACCCAATGCGTTAATGCGGCTAAGGTCCCCAGACCCTgaggatattaaaaaaaagaaaggttgGTCCCCCTCTGCCAAAGTATCAAGATCCCAGTGTTCATCTCAGGAACCTAAAATTAGGAGTTCCACTCCTGTTAAAGCAGAAGGCATCTGCTGTGCTGTTCAGACGGTTGAAGTAAAAGAGGAACCCTCTgctttaaacaacaaaaatgatgataatgatgattataTTTCCTACTCTCCCCTTTCTGAGCTCCCTGCTGAAACAGATGTTATCTGTAGTAAGAAAAAACTGTTTCAGAGTACTGCAGTAAAAGAAGCGGATAGCGATGATGATAATGACTCACTGATGCTGTTTGATGAGACTGTGAGTGAGGATGGTCTACTCTCTGATGTCTTGGAGCAGTTTGAGAGAAGCCAAGAAGATTCTCTCAGTACGGAGGCTCCGCCTGTGACCACCTGTGATCAATTAGAGTCCTTAGACCCAATTGAAGATGTTGCTGATGAAGCATTTGGGTCTCATTCCAGTGTTAAACACTCGCAATACAAACAGTTGGTAAAAGACAGTGAAGGTAAAGGGAGCAAGTCTCAGTTACAGTCTCCTGGAAGTTTAGTGTTGGAGCGCCTTCGTGATCATTTATCTAACCCTGCAGATTTCAACAGTCTTGACTCTACATGTGCAGAAATAGACTCTGTTTCTGAAATGCCTTCCACCATGCTCACCACCAAAAACCAGTCTCTCTCCACCATTACTCCCAGTAAAACCCAGAACAAGGTCTCTGGGTTAAAGCAAACTGATATTGGTGTGTTCTTTGGATTGAAGCCACTGAGTAAGAAGGCTGAAGAGAAGGTTAATTCAGTGAAGGAAGAGGTGAGCTCTACTCCTAGAAAGAGCTCTGGACCTGCAGGACGGAATACTAAACGTCAGGGTAGACAGCGCGGGAAGAGTGCTGCAGTCCACGAAGAGTCCACAGCAACGGAGGCAGTCGAGGAAGGAGCTGCTCAGCCCACGCAAACAGAAGGAGGCAGAGGAGTGAGGGCAGGGGGGAGGAAGAGGTGGAACAGAGGAAGAGCGACAGATGGAGGACCAGTGGAGCCCAGGCGATGCCCGTTCTACAAGAAAATCCCTGGAACTGGCTTTGTAGTCGATGCGTTTCAGTATGGAACCATTGAGGGCATTACAGCATACTTTCTTACACACTTCCACTCTGATCACTATGGAGGACTCACAAAAAGGTCCACACTTCCCATCTACTGCAATAAAATAACTGGTAACCTGGTGAAGAGTAAGCTGAAAGTGGATGAGCAATATGTCCACATTCTTCCAATGAACACGGAGTGTGTGGTGGATGGTGTAAAGGTCACCCTTTTGGATGCTAATCACTGTCCAGGGGCAGCTATGTTGCTGTTTCTGCTGCCAGATGGCCAGACCGTGCTCCACACAGGTGACTTCCGGGCTGATCCCTCTATGGAGCGCTACCCAGAGCTGCAGGGCTTCAGGGTTCAGACGTTGTATCTGGATACCACGTACTGCAGTCCAGAATATGCCTTTCCCACTCAGCAGGAGGTGATAACTTTTGCTGCTAACACAGCCTTCGAGCTGGTCACACTCAACCCTCGGACGCTGGTGGTGTGTGGCACTTACGCTGTGGGGAAAGAGAAGGTTTTCTTGGCCATATCTGATGTGCTGGCTTCTAAGGTGTACATGTCTAGGGATAGGTATAACACCATGTGCTGTCTGGAGTCCAAGCAGATTTGCCAGTGTATCACCACAGATCCGAAGGCAGCTCGGGTCCACGTTCTCCCCATGATGCAACTCAATTTCAAGAATTTAGAGGCACACTTGCATAAACATTCACAATCATATGATCAACTGGTGGCTTTCAAGCCCACAGGCTGGACCTTCACTCACTCAGGGGATGTGACAAACATACAACCTGAAGTCAAAAACAACATCAGTATTTATGGCGTTCCGTACAGTGAGCACAGCAGCTTCCTGGAGCTGAAGCGGTTTGTGCAGTGGCTGCAGCCTCTGAAGATCATTCCCACAGTGAATGTAggcagctggagcagcaggaagGTCATGCAGCAGTGCTTCAGCGAGTGGCAGACTGAGGCCAAAGCCCTGAACACAGTTCCTCGGAAAGGCTGCCGGAGCTCCTACACAAGGCAGTAAGGGGCCTCATCATAAAAGTCCAGCCTTTGACCAGGTAGTCAAACGCTGGCTTTAGGACCTGATGCAAGTATAGCTGGACATACTTGTGCTCGTGTTATAAAGGACCTTTCCTCTCATTTAGAAAGATGCACAGGAAGACCCAGAACCACGTTTTATAcagattttaatactgttttttttttttttataaagaagatTTTACAGTGTTGCACAGTTATTTACTAGTGAAAACCTGCTTTTACACGTCACGCCCAATTCATAGACAAGTGACTAAAGCAGTTTGGATAaaagataataaagtaatattgtATTGTCAGTCTGAGGTGGACTGTTGTCTTAATATTGATCACTCCATAACACTAATGACTTTGAACTattgtgcgcgtgtgtgtgtgtgtgtgtgtgagagaaagaaatattCTGATTGTTACAAAATATGTaattgaaataaatacatttaagctaA

Function

GO: NA

KEGG:

id description
K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46707 lncRNA downstream 161039 5677418 ~ 5681939 (-) True G34719
TU46700 lncRNA downstream 183074 5659024 ~ 5659904 (-) True G34713
TU46695 lncRNA downstream 197873 5644906 ~ 5645105 (-) True G34708
TU46673 lncRNA downstream 268220 5573473 ~ 5574758 (-) True G34688
TU46666 lncRNA downstream 451658 5391095 ~ 5391320 (-) True G34682
TU46759 lncRNA upstream 9649 5862457 ~ 5867932 (-) True G34760
TU46770 lncRNA upstream 34230 5887038 ~ 5891991 (-) True G34765
TU46774 lncRNA upstream 74881 5927689 ~ 6012669 (-) True G34769
TU46809 lncRNA upstream 190117 6042925 ~ 6043439 (-) True G34791
TU46833 lncRNA upstream 196198 6049006 ~ 6052438 (-) False ablim1
XM_007259251.3 mRNA downstream 20547 5818722 ~ 5822431 (-) True LOC103041412
XM_007259249.2 mRNA downstream 39856 5771619 ~ 5803122 (-) True nrap
XM_022668954.1 mRNA downstream 155819 5600368 ~ 5687159 (-) False tectb
XM_022668953.1 mRNA downstream 155820 5606621 ~ 5687158 (-) True tectb
XM_022668952.1 mRNA downstream 246540 5579330 ~ 5596438 (-) False acsl5
XM_007259261.3 mRNA upstream 50780 5903588 ~ 5928154 (-) True ccdc186
XM_022668970.1 mRNA upstream 75753 5928561 ~ 5934694 (-) False LOC103043680
XM_022668969.1 mRNA upstream 75753 5928561 ~ 5934690 (-) False LOC103043680
XM_022668968.1 mRNA upstream 75753 5928561 ~ 5934690 (-) True LOC103043680
XM_022668972.1 mRNA upstream 128181 5980989 ~ 6038592 (-) False afap1l2
XR_002649848.1 other downstream 480493 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 1959509 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2053786 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 2053872 3783408 ~ 3789106 (-) False prr15l
TU45984 other downstream 2053914 3783408 ~ 3789064 (-) False prr15l
XR_455628.3 other upstream 55166 5907974 ~ 5928154 (-) False ccdc186
TU46775 other upstream 83027 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 612560 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 684213 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 766872 6619680 ~ 6653585 (-) True G34981

Expression Profile