RNA id: XM_007259258.3


Basic Information

Item Value
RNA id XM_007259258.3
length 4948
RNA type mRNA
GC content 0.43
exon number 1
gene id adrb1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5887044 ~ 5891991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTCGCGCTCCGAGTGCAGGACGGATGGAGCGCGGCGGCGAGGATGGCGCGCCACACGGGAGCGCGTGCTCGGCGGACAGCGTGAGATCGGGACGCGGAGCGCGCGGGGGTCCCAGCATGGGCGACTACGGCAACGGCTCGAGGCGCGGGCGTGCGGAGTTGCCCCCGGGCCCCTCGGAGCAGTGGGCGGTGGGCATGGCCGCGGTCATGGCCCTCATCGTGCTGGTGACTGTGGCGGGCAACGCGCTGGTGATCTTGGCCATCGCGCGCACACACCGCCTGCAGACGCTCACCAACGTGTTCATCACATCGCTCGCGTGCGCCGACCTAATCATGGGCATGCTGGTGGTCCCGTTCGGCGCCGCGCTGCAGGTGCGCGGCGCGTGGCTCTATGGCTCGTTTCTGTGCGAACTGTGGATCGCGCTGGACGTGCTGTGCGTCACGGCTAGCATCGACACCCTGTGCGTCATCGCCGTGGACCGCTACGTGGCCGTGACGCGGCCGTTTCGGTACCAGAGTTTGCTGACCAAGGCGCGCGCCAAGGTGGTCGTGTGCGCAGTGTGGGTGGTGTCGGCACTCGTGTCCTTTCCCCCCATCCTGCTGCACTGGTCCCGGAGCACGGAGGACACGGCATGCTATGAGGACCCGGAGTGCTGCGACTTTGTGACGAATGGCGCGTACGCTGTGACCTCATCCGTCATCTCCTTCTACCTGCCACTGGTGGTCATGGCCTTCGTGTACGCGCGCGTCTACGGGGAGGCCAAGAAACAGTCAAGGAAGATTGACCGCTGCGAGGGTCGCTTCCACAATGGCGGTGCCAAGGTGCTGGGTGCCAAGGAGCAGAAGGCCCTCCGGACCCTCGGCCTCATAATGGGCACCTTCACCCTCTGCTGGCTGCCCTTTTTTGTGGCCAACGTGGTGCGTGTGTTTCGCCCAAGCGCCGTCCACGACCACCTCTTTGTGTTCCTCAACTGGCTTGGCTACGCAAACTCTGCCTTCAACCCCCTCATCTACTGCCGCAGCCCAGACTTCAGGCGCGCCTTCAGGGCACTCCTGCGCTGCGATCGGACATTTGTAGGAGCCACTGAAGCACTGGATCCCTGGCGCCCCACTGCTGTCAGCACACCAGAGCCCACTGCGATGGCTATGTACTCTCGCTGTGATGAAGGTGGCATCACAACCCGGTGCTGAGGTTTGATTAATTGACTGACCCAAATAACATGCCAGTCAGAGTATGGGCTCTATGGATAGCTCAGCTAACTTGGTTGGGTCCCATGTTGGCCCCATGCACATATGGATGTCGGCGAAGGGCCACATCAGGGTCAGTGATGGAAGCAGGAGGGTTTAATCATGGGCCCCATCTGTGGCCTAGATGGGTCCAGGTGAGATTAAGGGGGGCTGTAACGATGGGTCACAGTAACAATACATCTACAAAGCCCATAACCACCTGGAACCTGCCCGGCCCACCCTCCACCCATATGGCATTTTGGCTGGGGATTGACGCACTCACAGACATGAGGATTACAGATGTGGATGGAAAACCCCACCAGTGGGATTTGGTGGGATTGGAGTGATGGGACATGTGTTGTGTCTATAAGGCAAAACAGCACGGATAGAAAACAATTTGAAACTTGATTGCGGTTTAAGATGTGATTTATTTTGTCCCATACAAACTGCCAACTTACTGCAGCCACACACATATAGGAGAGCTGGAAGAATGCAGACATGACTCTGTTGCCAGATCAAATTTTTTTCTGCCCCTATTTCAGCCCAAACCAGGACTAAATGGAGCCCAAAAATAGACCCAACATCTGACCTAGAAatggcctgttttctgcagcTATAGGGTGGCCTTAGGTATTTATTATAGGACATTCTTAAAAATGAAAGGATTCTTTGAgcgatgccatagaagaaccacttttgtttCCAAAAAGAACCTTTCTGAAGTAATGTCAAGTGTGAAGAATCTTTTAAATCTTAAGAGTAAAGACTTTTGGCCGTCGTTTAAAGAACGCTTAAAAGCATCTGTATCATTGAAAGATTTAGTGAAAGATGATGGGTGGAAAAGGTATTTCATCTGTATAATTTACTAACTGAGCAGAATGCAGATGGGTTTGGTGTAAGATGGTTTACTGGAGAgaaatttgctgttttatttttttgttctcagTGGTGCTGATAGGAACCACAGCTCACAGAGTCCACATGGATCATTTTGGAGGTCTGGTTCGATCAAGCACCACCACcatagtgaataataataatagacttAGAAAGTTTTTCTTAAACAGTGAATTTCACACCAAAGTAGAACTGgacaataattaattattattatttatcacaatataaaatgttttaattagggTCATATGATTTTCAAAcacatttctaatattttattatactattatataatattattacagtATCTGTCCCTGACTGACGTTCATTACTGGATAAATTACATCAATAggcaaattaatttttttagaaattCGTAGGTTTGTATGTTTTGTGCAAGGTCATATTAAATTCAAGGTCATATTAAGTTGTTATTTGATGCAAACAGAAAATTCAAACTATTCTCATTTTCCATGACAAATCTTACAGAGgccataataatatattttactccAACTTGGCACTGTTCCcactgttttattattgcattattaatatcatatcATGTCAAATTGGATTACTGACTGGTAACATCCTGGAAGAATcccttaatattttttaatatggcTATTTATATACAGCAGACAAAATTCtgcaatgtcagtttttattcagatattgtgtacacctgTGTCCCATTCAAGCATATATGTGTACAGTAGCATACCATCCCTGTTAACCATTTATGTCCATTAATATCTACCTATAGACCACCCAGCAAGCACAGTAATTGTGAGAGGAACTGATTGTGAGATCATACTGtgtataaatgttgttttttgtagGGTTGCCAACTTTTCTGCCCGTTTTGAAGCCCAGCTGAGGCTTAAAACTTGCAGACTCAGATAAACCCTGCCCTCTATTTCGCCCTACACTCAGGCATCTGTCCCGTATGTGCAGAAACAGACTTCCCTTATGGCTCTCAAACAATGTagatttgtttctgttttaactAAGAGAAAAATTACAAACTCATGAACATCCTCCTCCACCTTCTAGGAAAAATAAACGAGAAAGGCCAGAGTCTATTCTGATCTGCTTGTTTCTTTAGGCCTGTTTGTTTTTAGTTAGCAATCGTTCCTGAATGCTGATGTTGAATTGAATTGACTGTTTAAAAGGGACTTTAGTAAGGTTTCTTACAGTGGGAATTTCATCTTAactgaaagagaaatagagtaTGCTCTTTGTGATGCTTAATCAACCATTTAGGAATTTAGAAATTTGtgataaaatagctttttgttCACCTACAAATAAAAACCCCAAACAGCAAAACTGCTGGCAACAGTTTGATGCTGCCAGCATTGCTCCGCATGCTTATGTAATAACAGCCCACCAGTCTCAGATGTCTGGTTAATAACTGCCTGAGCCTTATGAGTGAATAAATGTGGATAAACTGGTTAATAGCTGCGTCCATAATGGCTGGGtttaaaaatctacttttttatACCAAACAATATTACTTTAAATGTTCTAATATATCGATTAACGTAAACCTGAGATTGGTCTTTAAAATGTgcctattttgaaaaaaaaaaaaacaatatataaatattaatattttaaattgtggtAAGTTGAGGGTTCCTTGTGCAATTACAACAATTCATTTTCTGAAGATCTCTTtttatatacaaacaaaatCTGTTATATAAAATGGAATTGGGAATCTGATTGAATTGGGAATCAAAATAATTTGGGGAATCAGTggtgatacccagccctaataaacagccaatcacacaaaGGACACTATCATTAGTACTGATAATTTGTCTTCATAGTAGATATAGTACAGTAGTATGTAGTATAAACTCCATGCTATTGCACTATATTGTTTTCCAGTATGCCAGAAATAGCACACTGTTATTAGTATTCCATTCCTTAGTACATAATGGAGAGGTTTCTCAGTCCAAGATTAAGCCTAGCTTTGGACTACACGGCATTTTTGAATGAAGATTTTCTACAGAAAGTAAACCATACCAATATAGTACAGTAGTACAGTATGTGGTTTCAGATGCAGCCTCAGTGTAAATAATAGCAGTgcaaaaaagccaaaaatgaggtcctttttattaaatattaaaactctCTGCTACTATTTTCCCCAAACAATATGAGAAAGTAGTTCAGTTGTGCAGAACATCGCCCAAGTTGGCAACCCTGTGAATTTGTTCTGAGTTGGCTTGAGCACTTCTGCAAATCCAGGCTTTTCATTTTCAGCAGCAGTTTTCACTAAACCTCCAGCTTTCATATTGTACATACGAATGTGACGTTTGAAGAAATCTCCTTTTACagccttactttacctcatacCTTAGAAATGTGCAAATTGTACGAAAGGaaattgtttatattaaacaaccTTTTCAaactatacagtatttatttggtACTAAGTAGGCTGTAGCTGATGGAGTAAGCTTGATAAAGTGTCAGGAAAATTATCATATAAAGGGAACTGTGATTCATTGCTACCTTTGCACCATCTATTTTGTCTAATGTGAGCGAGCTGCTTCTTTTCTCCTTTAGTATTGTAttactatttaatattttaatacatcgGTTTGcctaattattaaaaaagggGCTTAGTATTTTATTCATTGACGCACAAATAGGCCTGGTTCTGTTTTATGTAGTGCAATTTCTGCCCAAATGCCATATATCTGCATTAGTAATTCATGTAGCAATGCCTGATGTAATGTATAAGGTCTTCATGTTTACGAGTGTGGAATAAAGTGTCCTATTGAAAACACA

Function

GO:

id name namespace
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0002027 regulation of heart rate biological_process
GO:0045823 positive regulation of heart contraction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004940 beta1-adrenergic receptor activity molecular_function

KEGG:

id description
K04141 ADRB1; adrenergic receptor beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46590 lncRNA upstream 39119 5844902 ~ 5847925 (+) True G34636
TU46539 lncRNA upstream 93226 5788758 ~ 5793818 (+) True G34602
TU46556 lncRNA upstream 144600 5739614 ~ 5742444 (+) True G34615
TU46540 lncRNA upstream 175189 5692540 ~ 5711855 (+) False dnmbp
TU46544 lncRNA upstream 227142 5659266 ~ 5659902 (+) True G34606
TU46601 lncRNA downstream 22250 5914241 ~ 5916402 (+) True G34644
TU46622 lncRNA downstream 74697 5966688 ~ 5967194 (+) True G34657
TU46808 lncRNA downstream 150855 6042846 ~ 6043340 (+) True G34790
TU46881 lncRNA downstream 363615 6255606 ~ 6258050 (+) True LOC103045604
TU46883 lncRNA downstream 366562 6258553 ~ 6258814 (+) True G34841
XM_007259257.3 mRNA upstream 11830 5852907 ~ 5875214 (+) True nhlrc2
XM_022668962.1 mRNA upstream 45201 5829634 ~ 5841843 (+) True plekhs1
XM_022668963.1 mRNA upstream 45201 5829636 ~ 5841843 (+) False plekhs1
XM_007259255.3 mRNA upstream 45201 5831007 ~ 5841843 (+) False plekhs1
XM_015608337.2 mRNA upstream 59035 5824388 ~ 5828009 (+) True LOC107197901
XM_022668965.1 mRNA downstream 12115 5904106 ~ 5948629 (+) False tdrd1
XM_022668967.1 mRNA downstream 44003 5935994 ~ 5948628 (+) False tdrd1
XM_007259262.3 mRNA downstream 44004 5935995 ~ 5948629 (+) True tdrd1
XM_022668966.1 mRNA downstream 44004 5935995 ~ 5948629 (+) False tdrd1
XM_007259270.3 mRNA downstream 57553 5949544 ~ 5981217 (+) True vwa2
TU46176 other upstream 1708961 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3830170 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4049468 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4499025 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4765172 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 727679 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 727680 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 838963 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 1010426 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4581383 10473374 ~ 10474792 (+) False G35744

Expression Profile