RNA id: XM_007259261.3


Basic Information

Item Value
RNA id XM_007259261.3
length 5492
RNA type mRNA
GC content 0.47
exon number 16
gene id ccdc186
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5903588 ~ 5928154 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCCCCCGTATCAGTCCGTGCAGCGCCGGGGCCATATTTGTTGATGTGTCACCTCAAGAAAACAGAGCAGTGGACGATCAGTGGCTTAAGATCAGCTCTAGTATCATGATTATCAGCCTCAGCAAATGGATTTAACAGGTCTGGAGCTTTAGAGGAGTATGGAGCAGCCTGATTGCCAGGAAGAACAGCACTCAGCCTCTGACCCTCCTGAGACCTCCAAGGTTAACTCAATATCTACAGGGTCATCAAAAGACAGCAGTGATGGTGGTGGAAATGAGTTGATCGGTGTGGAAGGGAATAGTTCTGCTAATGATGCTGAAACTGATCAGGACTCTCTGGATTGCACACAGTCTAATGGTGCAGATGGAGTAGAGCTGAGGCTACACCTGGACCACACGCAAGGCCAGGAAGGAGCAAATGGAGAGGATGGGCAAGGTGATGGCAACACCAGCTGTGACAGTGGAACAGCTTCTTTAGACGATGCCAGAACTCCCCCAGCTCATCACAATGGGCTAGTAGAGACATTGCCTGTAGTTCTGGATGGGACAGAAGAGGATTTGTCAAGTACCTCTGCAAGGCCAGAGGAATCTTCTTTGTCAGTTCCAGAGGAGATATCTGTGAATAGTGTATTAGAACCTTCACCTTCTGAGTTGGACAACACTTCCTCAGTTGAATTAAACACCTCAGAGGATGCTGCCAAAACCCAAGCTCAAACCTCAGTCATCAATCAGACTGGTAAAGATACAAGCTCAGATTCAGCAGGTTCAACACAGACTGAGGAAACTCCACAACACTTTGACTCAATGACAAACTCTAACCTGTACGATACAGACTGCAGCAGAAAGCTGATGTCTGAGATCCAACGCTCCATCTCTCAGGAGTCTTTACTGGATGAGCTGGAGTCAGAGCTGCTGAACTGTCAGCTGTCAGAGCAGAGTAACTACAGAACAAGCCCTCCAAATGGCATGCTCAAAGACCCGGGCTCCATGGTTGTTTTTGAGAAATGTGTGCAGTACAAGTACTCTCAACAGGAGAAGGCCATCAAAAGGTTGCTGGATGAGAATAAGAAGCACCAGGAGCTGATATTGGGCATCTGTTCCGAAAAAGACAACATGAGAGAGGAACTCAAGAAGAGGATGGAGACTGAAAAACAGCACATTTGCACCATTAAGAAGTTTGAGAGCAGGGTGGAGGAACTACTGAAAGAACTGAAAGAATCCAAGGACAAACTGGTTCACCAGGATCAAGCTGCTAAAGGTGCTGTCCAGCAGATGCAACGGGAGATGGCCTACCGCCTGGAGCAGGCTAGTAAGAAGTGTGAAGAGGCCCGGCAGGAGAAGGAGTCGATGGTTATGAAGTATGTGAGGGGGGAAAAGGAAGCGCTGGACTTGCGCAAGGACAAGGAGCAGTTGGAGAGAAAACTGAGGGAGGCCACAGCGGAGGTGGACAAACAGGCCAGGAGGGGGAACCAACTAGCCCAGGAGAAAGGAAGGCTTCAGCAACTACATGAAGCGAAGGAGAATGAAATGGCCAGGTTGTCTCGGGAGCTGGAGAAAGTCAAGGAGGAGATCAACTCCCATGTGATTAAAGTGAAGTGGGCACAGAACAAACTGAAGAGTGAGACGGATGCTCACAAGGAAACAAAGGACAAATTGAAAGAGACAACAGCGAAGTTGACCCAGGCTAAGGAGGAAACAGAACAAATACGCAAGAATTGCCAGGACATGATTCGTACATATCAGGAGTCAGAGGAAATTAAGTCTAATGAGTTGGATGCGAAGCTGCGGGAGACGAAGGGAGAGCTGGAGAAGCACAAGCAGGAACAGACAGACCAGCTGGAGATGCACCAAGCCAAGATTAAGGAACTGGACGATCTGAAAAGGACCTTCAAAGAAGGCATGGATGAGCTTACCACTCTCAGAACTAAGGTGAAGTGTCTGGAGGATGAGAGGCCTCGGTGGGAGGATGAGCTGTGTAAATATAGAGAGATCATCAACAGACAGAAGTCTGAGATCCAGAATCAGCGTGAGAAGCTGGGTGCCATCCAAAGGTTAGAAGAGCAGCATGAGAGAGATGAACAGGAGATCGCAGCCCTAAAGGATGAGGTGGAAAGTCTAAATTCTCAGACCGCTGATCTGCAGAAGGATGTTCAGGGCGGTCGAGTGCGGGAGGCTGAGCTCCTTGGCTTCACTGAGAGGCTGACGAGCAAGAACGCACAGCTGCAATCTGAGAGCAACGGCCTGCAGGCCCAGCTGGACCGCTTGGCCGCCAGCTCTAGAGATCTGCAGAGCCGACTGGAAGAGACAGAGCGATCCCTTGCAGACATGACTGCCAGGCTGAAGAAAGAAGAGCAGCAGAGGCAGAGTGAAGTCCAGACACTACAGGCAGAGAGGACTGCACTGCAATCGGAGACTGCTCAGCTGAAGACACGTGTAGAAGAGCTCAGAGACGAGCTGGTCACACAGAAGAGAAAGCAGGCAGCCAACATCAAGGATCTCACGAAGCAGCTCACGCAAGCTCGCAAGAAGCTGGAGCAGGTGGAGAATGGTGGCTGTGATCGGGAGGGCAGTAGCATGGGCAGTCGCTCCAGCTCCTCAGgCTCTTTGAATGCACGAGGCAGCAGTACGGATGATCGTTCTCCTGAGAACCAGTCAGGGCCATCGGTGGTGGTGGTCGACAGCTTTCCAGAGGTGGACAAGGCCGTGTTGGTGGAACGCATTGTGCGGCTGCAGAAAGCCCATGCCCGCAAGAATGAAAAAATCGAATTCTTGGAGGACCACATTAAACAGCTAGTGGAGGAGATCCGGAAAAAGacaaaAATTATCCAGAGCTATGTACTGAGGGAGGAGTCGGGCGCCCTCTCGTCTGAGGCTTCAGACTTTAACAAAGCTCACCTCAGTAAGAGGGGGGGCATCATGGCCTCTCTGTACACCTCACACCCGGCTGACAGCGGCCTCACACTTGACCTCTCGCTGGAGATCAACCGCAAGCTCCAGGCTGTGCTAGAGGACACGCTGCTCAAGAACATCACACTGAAGGAGAATCTCCAAACCCTGGGCTCAGAAATCGAGAGACTGATAAAACAGCAGCGGCCACATGAACACACTGTCAGCAGGAAGTGACGGCGCTGCTCTCAGTGAAGAAGTGGGTACatgctagaggaggtggtcacTGATGGCGGACCAAGTTTACCAGGAGTTCAGGTGCTCTGAAGGACCAACCTCTGTGGATTTAACTCACAAGGACTtgaatatacacacaaacatgcacatacAGTACGTGATCATCATACATGCTTCCACATGACCATTTGACCAGTTGAATAAAGGGAGAGGCCAAGCAGCCAGAAAGTAACCGTCCTCTTAAAAGGGGTTTCCTTCATCTAATTTCTGTTCTTGCTGCTTGCTAACTGGCTAACTCCTCCTTTAATGTGCTTTGTACTCACACAAACATGCTGCACATGCACAAACATGCTTCACACACATGTCCAGTGTGAGCTTCTCTGTGGAATGTAGCTACTGCACCTGCCCAACATGACCTGAGCCACTCTCTTAAGGTCCCAGCATAATTGCACAACCCAGTGGCTTGCAAGTTATAAAGGCCAtaagatgaatgaatggatgagtTAATTAATGAGTGAGTGAACAAGTGTCCTGATGAAGGTACTTCCATTTTCCCCTGAAGAATTTAAAGTGCTTGACCCTACTAATGGAGTTCTGTTGGGAAATAGGGATTCAGCGGGTAATGGTGCATTTCAGACACAGAAAACTGCTCCAGACCCGCTCCTCTTTATTATCTCGCCACATAGAGGCGAAAGCTTCTTTCATTCGCCCATGATGTATACGTGCCAATTACTGAATGTGTTGCATAACGAGCAGACCCTAATGCACACTCCCACATGTTctagcctgagagagagagtgcaagagcGAAAGAGTGAGGGGACATTGTTTCCTCATAAGGTTCTCTTCCAACCGGATGCCATTTTCTCTCTGTGGCCCTTGTGAAGCACTTAAGCGAGAAAGGCCATGCCAAAAAATACAGCGCCTGCCTGCACTTTGCCCAAATTAAGTGTCTTGTTGCGGAATAATACAGATTAATCATAATGATAACTACATCTGAAAGAGTTGGGTAGTCTAAGGCTGGTCTTTAGTAAGTGAGCTTATGGtctggtttttatttatttattttcctgctGGTCTAAATGAATTAAGTTCTTATTAAATCAATACGtcatgaatgtttttttttccttgttctttagttttttcttttgtccTGCTTGCTGTGGGGATTTCAACCTCTGCCTCTTGTCCTCTGTCGAAACTGCcagtatttatgttttaatttttggcGTACACACTTTTTCCCCTCTCGTATGCTGTTTGTGTTTCCTTGAACGAAGTTGTTGTAAGGCTGAATTAAAAAGGCAGTTACTCATTTAGCTGCGGTTTAAAGGGATAAGTGGGGAAAGCCCGGTTAACTGAAGGAGACATTGTAAATATTGAGGGCATAAGTGCAATTCTGTTTTTTACCCCTCTGTAATTGTAAGAGAGGTTGACCCATTCATAAAACATGCCTGAGCTCCCATCACCGCCCGCAGCTAATGTCCCATTTAAAGACCCAAAAACAGCTGATTTGTAGCCTTGTGTGGCTGTGTTCTGTCAACTGGAGAATTCTACTCTGCATTTGGAAGAGTCCAGAATTAAAACCCTAATTGGCTGGATGGATTTCTTTTTtcatctttccttttttttttttttacacctatGGAAAGTGAAAGTATGAAGGATTATGTATCGGACCACCTCATGACTTTATCTGTCAGCCTTTGTCCAGCCATCAAGCCCAGCTAAGAATGAACTGTAAAAACGCAAAGAAAATTCAATACCTGCCTACCGCACTGCAACTGGAGCCAATTCAAGCCTACTTCCTTTTCAAAATGCACTGTCTGCGTATTTTCCCTCCACACTCCGTCATCCTAAAACACGCCACAGACATTCCCTGCAAACAAAGAAGACAAGAAGACTAAATAAGATATTTATGCAATGTTAGGATAACCTATATTTACATGGAGGCCTGAACTCCAGGACGAACACTGTCAAATCTGTCAATGATTCTTCAAGGGACTTTTTCCTAATTTATTCAATGTCCAACTGAAATTATCTGTTGAAGTATGAAGTGACAAATTATCTCTGGAAttttgaatgtgtgtgagtgtataagTGCGAGTGTGGTGAATCATAATTGATGAagagaaacaaaagaagaaaaaagagagaaaaaaaagaattgtgtTGATTCTGTTGCTGGTCTGTCCTCTATGCTTTGTTTGATTGAGTAGTCTGTCAAACTGTGATGATTATACATTTGTAGATATGAGGTCCTGTACAATGGtctaatgtttttaaagctatGATTCTTGATTCCTTTCTGTATATATGGTGCTTACAGggaattaaagaaaatgtggcGGTGTCCACCGAAACca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46770 lncRNA downstream 11597 5887038 ~ 5891991 (-) True G34765
TU46759 lncRNA downstream 35656 5862457 ~ 5867932 (-) True G34760
TU46707 lncRNA downstream 221649 5677418 ~ 5681939 (-) True G34719
TU46700 lncRNA downstream 243684 5659024 ~ 5659904 (-) True G34713
TU46695 lncRNA downstream 258483 5644906 ~ 5645105 (-) True G34708
TU46809 lncRNA upstream 114771 6042925 ~ 6043439 (-) True G34791
TU46833 lncRNA upstream 120852 6049006 ~ 6052438 (-) False ablim1
TU46866 lncRNA upstream 221076 6149230 ~ 6152861 (-) True G34829
TU47029 lncRNA upstream 431757 6359911 ~ 6360378 (-) True G34939
TU47030 lncRNA upstream 438626 6366780 ~ 6368106 (-) False LOC103026268
XM_007259256.3 mRNA downstream 50780 5842978 ~ 5852808 (-) True dclre1a
XM_007259251.3 mRNA downstream 81157 5818722 ~ 5822431 (-) True LOC103041412
XM_007259249.2 mRNA downstream 100466 5771619 ~ 5803122 (-) True nrap
XM_022668954.1 mRNA downstream 216429 5600368 ~ 5687159 (-) False tectb
XM_022668953.1 mRNA downstream 216430 5606621 ~ 5687158 (-) True tectb
XM_022668970.1 mRNA upstream 407 5928561 ~ 5934694 (-) False LOC103043680
XM_022668969.1 mRNA upstream 407 5928561 ~ 5934690 (-) False LOC103043680
XM_022668968.1 mRNA upstream 407 5928561 ~ 5934690 (-) True LOC103043680
XM_022668972.1 mRNA upstream 52835 5980989 ~ 6038592 (-) False afap1l2
XM_007259269.3 mRNA upstream 52835 5980989 ~ 6038592 (-) False afap1l2
XR_002649848.1 other downstream 541103 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2020119 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2114396 3783408 ~ 3789192 (-) False prr15l
TU45986 other downstream 2114482 3783408 ~ 3789106 (-) False prr15l
TU45984 other downstream 2114524 3783408 ~ 3789064 (-) False prr15l
TU46775 other upstream 7681 5935835 ~ 5939400 (-) True G34770
TU47031 other upstream 537214 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 608867 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 691526 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2996674 8924828 ~ 8927717 (-) True G35429

Expression Profile