RNA id: XM_007259262.3


Basic Information

Item Value
RNA id XM_007259262.3
length 3966
RNA type mRNA
GC content 0.46
exon number 26
gene id tdrd1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5904106 ~ 5948629 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCACTTGGCGCGCGCACTATAGGCCAGCAGCCCGCGTGCGCTAGTGATCTCGTTTGTGAGGTCGGGGAGAAACTGGTTCAGTTCGGTTTGGTGGTCGTTATCATCTTTACAGCGCGTGGCACGGTCTGCTGTGAACAGTAGAAAAAAGGTGGTGGTCTTCATTGTCAGCTTTTGGagTTCAGCGAAGCACAGGCATAATGAATCGTGCCTTTTCACCATCACTGGTTAGGCCAAACCTTCCTTTGAGAAGACCTGCATCTGGTCCTGGTTTGGGGGTGATAAGGAATCCGAGTCCGGTGTTTACTGAACAAAGCACCAGTTTACTGCAAAGATGTTCTGTTGCAAATAGCCTAGAAGGGCTAAAAGCTGAAGCCAGTCGAAAGGAAACTGCTGTCGCTGTAGCAAAAGACATCAatgctaatgaTGAACCCTTACCTGCCCCAGTAATGGTAAACCTGTGTAACTACTGCAGTCAGCAGGGTATGCTCAGGTGCACACGGTGCAAAAAGACATGCTACTGTTCTGTAGCCTGTCAATCTGAAGATTGGAAGGCCCATCGCCACTTATGTAAACCAAGCACTTCAGAGAACAGTGCAAGTAGTGATAAACCAAAGGAGCTCTTAAACATACCTTCTGGAAGTGTCCCTAGTGTCTTGGACTCTAAGGTGAACAATGGTGAGGTAATTCAGTTGAAGAGAATTTTCTTGCGTGATTTATGCAAGAGTAACATATCCAAAGGAGATGAAGTGCAGGGAACTGTGGTGGAGCTGAGACATCCAGGAAAGTTCTTCATCCACATCCAGTCATTAAAGATGACCGAAACCCTAAGGTCTATTACTGTGGCTCTGCAGAAGACTTATGGCAGCTCACATCCTGCAGAGTACAAGCCAGAAATTGGGGAACTCTGCACAGTAAAATTCTCTGTAGATCAgAATTGGTATCGAGGTGAAGTTGAATCTGTTGATTTGGATCGCCTCACTGCAAAAGTACTCTACATAGACTTTGGAAATGAGGAAGATGTTTCATTTGACAAGATTCGTCCCATGGCAGAGAACATTGATCCTGCCCCACCATGtGCTTTACAGTGCTGTGTTGCTGGGGTAACTGCACTGACTGACAGCTGGACAGGCGAATGCAATATTGCTGTGAGACAACTTGTTGCAGGAAAAACCCTAACCTTCACAGTGATGGAAATCATGAACGATGGCACCTTGCTTGCAGTAGATGTCTCTCTGTCCATGCTTGGTAAGAACCTCAGTGCTTTCCTGATTGATCAGGGATATGCCATGAAAGTGGGCACACCTACGAAACCACAGACTGAGCAAGAAATTAactCATTAATGACAGCTTCTTTTGAGAACTTCAAGCGTTTATCCACTGGGAAGAATGAGAACATTGATGCTCAGCCACCCGAGCCTCTGACTCAAGGAGTGGGAGACACTTTTACAGCCATAGTCACTCATCTGCAGTCCCCTTCAGAAATCATCTGCCAAAAGCTAGAAAATGCCAGTGCTATCCAACAGTTGCAAATGAGTCTGAGAGAACATTGTACCAAGACTCCAGCCAGTGAGAACTTCAGACCTGCTCCTGGAACTGTCTGCTGTTCTCTTTTCTCAGAGGACAACCAGTGGTACAGGGCCAAAGTTCTAGCATATTCATCTGAGGATCGAGTCTGTGTGGGTTATGTAGACTTTGGGAACTCTGAAGAGGTGGAGTTGATTCACCTACGACCCGTCTCTATGGAGTTGTTGGCTTTGGCAACTCAGGCAATTCCCTGTGCCCTAGCAGGTATTAAGCCTACCTCTGAAGCGTGGTCAGAGGAAGTGATACTGATGCTGAAAAGACTGGTTTGTAACCGTTTCATCCAAGTGGAAATTCTCGGAGAGCGAGATGGAATGGCTCTAGTCTCCATGGTTGACGAGTCCAGTGATCCTCAGACTAATATAGCTGAGATGCTGGTTGCTACAGGTTATGCTGCTGTGGGAAATATGGAGACAGTAAAAGAAGCAACTAAGGAGGTTGAGTCCAAAAGCCCTGCTGTCGACAAGTTGGAGTGGACTTGTGCTGAACTTCCCATTGATGGCCATGAGGTGGTGCTGGTGATCAGCGTTCTAGAAAATCCTGGTGAATTCTACTGCTATAATTATAGTACAGAAGGCTTGCAGACTTTGGCAGAGTTGTCTTCTGTTCTTATGAAACACTGTGACACTGAGAGGACTCCTTTTAGCCCTGCTGTAGGAGAACCCTGCTGCGCTCTCTTTAGCGgaGATGGCCGCTGGTACAGGGGCATGGTCCAGAGTGTGGAGGGTGAGGGAAAGGCTAAAGTGTACTTTGTGGATTATGGGAACTCCTGTGAGGTAGAGGTGACTCATCTCAGAGCCATTGATCCCAGTCTACTTAAACACCCATTTCAGGCTATACGCTGTACCCTTGCAGGTGTTGAGCCTGCAGGAGGCCAGTGGAACGGGACTGCAGTGCAGAGGTTCGGGGAATTGTGTATAGGGAAGCAGCTCAGTGGCAAAGTGCTTTCCATTACTGAGAGGGGATATGGGGTGGAGTTGAAGTGCAATGGTCAGGACGTTGCAGCTGTGCTTTTGTCAGAACAGCTTGCCAAACCTTTTGGACAGGAGACCAAACTAACTGCCCAACAAAACAAACCCAGCGATTTGAAAGAAGCATCACCTGCACAAACACCACTGCAGACTGAGAAACTGCCACTTGCTGAGCAGCCAGCCAGCATCACCGATGAAGAACCGGCTCCAGCACAAGCAACCCAATCTTCAAGTGCTTCCTTTGTTTTGGACTGGAAGACAATAGAACTACCTAAACAAAAGACTTTTCAGCCACAGGTGGCAGCAGTGACCAGCCCAAGTCTCTTCTATGTGATGAATCCTATACTAGAAGCGAATCTACAGGTGTTGCAGGATGTCATGGCAGATGTGGCAAAGTACTGCAGCAGTCAGACTGTGGCCAACCAGAGTGTTCCTTTACCTGGATCAGCATGTTGTGCACAGTTTTCAGgTGACAAGAATTGGTACAGAGCTGTGATACTGGACACAACAAGCACACATGCAAACGTGATTTATGCAGATTATGGGAATTGTGAGAGGGTTCCTATCACCAGTATCTTGCCCATTCCTAAAGATCTTTTGCAGCACCCATTTCAGATTGCCAGGTGTGCTCTTTCAGGTAAAGAGCACTTTCCCACTGTCTGGCCAACTGAGGTTCTGGAACTCTTTGGAGTTCAGTTAAGCAGCAAGGTATTCGCCTCTGTACAGGGATTTGATTCTACCTTTAACCTGCTGATGCTTACCCAGCACACAGGCAATGGAGGAAACATTAACTCCATAATTCTTGGAGCCTTGAGGAACGCTCCAGTCAAGGCTAGCACAAAAAAGGTGGCCCAGGAGAAACCGGTTAAGGTTCAAGGCCAATCCGAGGCTGACAGGGAAACCAAGCCTTCAGGACCCACATCTTCAGACACTGAAAAGCTTAAACCCAGAAGTCAGCAAATTGAAAAAATGAAGACTGTGGTGGCTAGTGAGGAAAATATGGAGCTACAGGCCACTGCAGGTCCAACGGGTGACTGTAGTGTTCCTGTTTCTTCATGCTGCTGTGATGCTCTGAAGCAAAAGATTGACAGAATCGAGGAGCTGGTCATGCTGCTCTTGAAGCACACAGgaggaaacaaaaaataattctgttCTGACAAGGTGTTTTGAGATGTTACTCTGCAATTTTGTTAAGACAATTGAGAGTTaaattttgctttaaaaaaagtttgatgcAAGCTCAGTagtttctaaatgttttatcTATGTTTGTGTTCACAATTGGAAGAACAGTTAAGTAAATTAGTACAGAACGCAATATTATAATATGGtttggtttaaaatgtttcttattTCAAACAAGTATGGCTGTTTTAGTtgcaattttaataaatattgtattatgtCTTCAT

Function

GO:

id name namespace
GO:0030719 P granule organization biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0007283 spermatogenesis biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0071546 pi-body cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46601 lncRNA upstream 19593 5914241 ~ 5916402 (+) True G34644
TU46590 lncRNA upstream 88070 5844902 ~ 5847925 (+) True G34636
TU46539 lncRNA upstream 142177 5788758 ~ 5793818 (+) True G34602
TU46556 lncRNA upstream 193551 5739614 ~ 5742444 (+) True G34615
TU46540 lncRNA upstream 224140 5692540 ~ 5711855 (+) False dnmbp
TU46622 lncRNA downstream 18059 5966688 ~ 5967194 (+) True G34657
TU46808 lncRNA downstream 94217 6042846 ~ 6043340 (+) True G34790
TU46881 lncRNA downstream 306977 6255606 ~ 6258050 (+) True LOC103045604
TU46883 lncRNA downstream 309924 6258553 ~ 6258814 (+) True G34841
TU46884 lncRNA downstream 317680 6266309 ~ 6266668 (+) True G34842
XM_007259258.3 mRNA upstream 44004 5887044 ~ 5891991 (+) True adrb1
XM_007259257.3 mRNA upstream 60781 5852907 ~ 5875214 (+) True nhlrc2
XM_022668962.1 mRNA upstream 94152 5829634 ~ 5841843 (+) True plekhs1
XM_007259270.3 mRNA downstream 915 5949544 ~ 5981217 (+) True vwa2
XM_022668974.1 mRNA downstream 51377 6000006 ~ 6002530 (+) True LOC111192358
XM_007259273.3 mRNA downstream 200658 6149287 ~ 6152869 (+) True trub1
XM_007259292.3 mRNA downstream 232195 6180824 ~ 6185239 (+) True LOC103024806
XM_022669011.1 mRNA downstream 298017 6246646 ~ 6255637 (+) False LOC103045604
TU46176 other upstream 1757912 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 3879121 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4098419 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4547976 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 4814123 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 671041 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 671042 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 782325 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 953788 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4524745 10473374 ~ 10474792 (+) False G35744

Expression Profile