RNA id: XM_007259269.3


Basic Information

Item Value
RNA id XM_007259269.3
length 3847
RNA type mRNA
GC content 0.49
exon number 19
gene id afap1l2
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 5980989 ~ 6038592 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAACAGCTGGACCCCGCTGAGGGAGAACGGGGCTGTCAGAGGAGCCTCTACACCTCCACCTCCcacacctccacctcctctcAGGAGAACCTGTGGACTGCTTTATTTCAGCTGCATTACAGGAGAACCGGGAGCTCGGCGGAGAGACGCTCCTGCAGTCTGCAGGAATGGAGAAGCAGAAAGtgctggagcagctgctggaggagctgcagcgtTTTCTGAAAATCCTGGATGGAGAATGCCTGAGTGGAAATGCCAGTGTTCAGAAGAGCCTTCTCACTGACCTGCTGCAGTCTTACAAATCCTCAAATGgaGGAGATGAAGAATACATCTACATGAACAAAGTCATCGTCACTGGACAGAACCAGGACAAACCAGACAGAGACCACAGAGCGGAAGCAGAGGCCAATGGAAGATCAGGAAAGCATGTCTGTGCCCCACAGAAGAGTCTACCAGAGCTTCCTCCACCCAGAACAccTTTAATAGCAAGGGAGCCCTTTCCTCTTCCTCCAGCTCCAGCATGTCTCGAGTCTCCAGAGGGTTACTACGAGGAAGCTCAGCCCTATGATTCAGCTATCAATGATGAAGGAGATGCAGTGAGCAGCTCATATGAGTCTTATGATGAAGAGGAGGTGTCTAAAGAGCAGCCGTCTGCAGCACAGCACCAGTGGCCATCCACAGAGGCGTCCATTGAGCTGATGAAGGATGCACGGATCTGTGCTTTCCTCTGGAGGAAGAAGTGGCTGGGCCAGTGGGCCAAACAGCTGTGCGTCATCCGAGAGAACCGTCTCCTGTGTTACAAAAGCTCAAAGGACCAGACTCCCCTGCTGGATGTCAGCCTGGTGGGATGTAGTGTCATCTACAAAGAGAAACAGCTGAAGAGGAAAGAGCACAAGCTGAAGATCATCCCCCAGGGCGGGGAGGCCATCGTATTGGGCCTACAGAGCAAAGAGCAGGCTGAACAGTGGCTGAAGGTGATCCAGGAGATTAGTCCAAAATCTGCAGAGAACTCTGACATATCAGATTCCCCCAGACTCATCTGTACTAAGGGTGAGCTTAATGAGAGATATTCTGTAGCCTCAGAGAGCGGCAGCAGCACAGACAGCCATGCTGAGAACCTCGAGACTAAAGATGTTAAAAAGAAATATGGTGCTGGTCTGAAGTTAAGCAATCTGATGAACATTGGGAAAAAGAAGATTTCGTCTTTAGAGAGTCCAGAGAAGTGTGTGGACACATCAGGATATCTGAACGTGTTGGTGAACAGCCAGTGGCGCACCCGCTGGTGTCTGATAAAGAATGGGCAGCTTTGGTTTTATCAGGACAAGGGCAAGTCTAAGGTGTCCCAGCAGCCTGTGCCTCTGGAAGGGTGCATGGTCCTGCCAGACCCCAGCCCTGAACACCTTTACTCATTTCGCATTCAGATGGATGGAGAGCAGCTTGCTATTCTGGAGGCTAAATCATCTGCTGATATGGGTCACTGGCTGGGGTTACTACTGTCacagacagggaccaaaacTGACCCGGAGGATCTCACCTATGACTATGTAAACTCTGAAAGAATATCCAGTATAGTCAATGCAGCCAAGACCTCCCTGTACCTAATGCAGAGAAGATACTCTGAGCCCAACACTTACACAGACAGCCCCCCTTCAAACCCCAACGGCTCTGACGACATATATGATGACGTGGCCTCAACAGAGAATGAACAAGAGGACGGTCAGGAAGGCAGCAGTGAGTTGGTGAACTCAGAGCAGGACGGGAAAGACAGAGTGTATCTAGACCTGATCCCTGTGCGCTCCTTCCTCCACACGAGTTCGGGAAGAGTGTCCCCCCAGTCCACTCCCTCTCCACAGACAGAGCGCAGCCCCACCCCAACTCTCACCGTCGAGACACAGGACACTGCGAATGAGGATATTAAATCTGCAGTGTCAGTGTATGAAACTTCATTACCCACAACCACAGAGTGCCCTGATGCTCCTCCACCCATCGCCCCGAGACCCGATCTAGACACTCCAACATCCTCCAGCTCCAGTGTGCAGCCCCAGAATCACCAAACACAGTTACAGAACCAGCACCAACAACAGCACCAAACACCCCACTCTCAGCCCCAGAGGACCTGTCTGCCCAGTCAAGAGGGCCCGAAGAAAACCACTCCCCACAGCCCTAGCAATCCACGAAGCCATACACTGAGTCAActacacacaccttcacacacacctCAAAGCCCCCCCACCGTCCGAGGAAGAGCAGCAAGCACTGATAGATTCCTCGACAGACTGAAGCCCTCTGCAGCAGCGTGCACGGGGTCAATCGAGGTGAAGCTGGGGAAGAACCGGACGGAGGCTGACGTGCGGCGCTTCACAGATGAGAGAGACCGGCTGGAGCGAGAGAGGGAAGAGGTCAAAAACACTCTGGCCACGCTGAGGAAGGAGAGGAGGGAAGCGAAAGAGGAGCTGAGCTCCTGCAAAGACTCCTCTAAACAAGCGTCTCTGGAGGCGTTTCTGAAACAGAGGGAGGAGGCGTGTCGAGAGGCGGAGCGTCGACGGGTGGAGGTGGAGCTCAGCCTGGTTGAGGTGAAGGACAACTTGAGGAAGGTGGAGGCAGGACCCTTTACTCTGGGCACCACAGTAGACAGCAGCCTACTGGAGACACAGCCTTTGGTCAGTGTGCCAACCAGGcCCAAGGCAGCTCCTCTTGCCCCAGCAGCACCTGTTAACAATGGAGATTCCTCACCTGTTAACTCAGCTACAGCACTGAAGAGCAGGCCTTTGTCGATCATGGCAGCAAGCAAAGGAAACGTTCTGCAAAAAGCCAAGgaGTGGGAGAAGAAATCAACAACCTAGGCATGGAAATGGAACTACAGAGCTCAAAATGTGATCTTATAAGGACCCTCAACAAAGCAGAGTTTCTGGTCAGCTTCAGCTGTAATGTCTACCTTGGCCAGGCTTTTTTTCCACAGGAAAGAATGAAGACTTGCTTTCTTCAGATGTGCCTCTGCCCCCTCAGCCCTTATGGAACACCACCTTTTTCTTCAGTTACTCCATTGAGAGACTGCAATGGTACTGCTCACTGCTGGCAGCTTTGCAGAGGTAATGCTGTTGTCTTATGGTTCCCCCAGCAATGCCACTGGACACGGTTGAATCCATATCtatttaagtcttttttttttttttttacatggaaaAATAGAgggattttaatattttttttattgcagtaatgaACAGATTTAAGAAAGGATGTTGTACTGATCGTCTTAATGGAGATATCCTGTGTAAAATAGACTTTGGGCGTAGTGAAACATGATCACGAGTAAGAACTTATGTATAGCCAACCTCAGTTCGTCCCCAGCATTGGGGAactacagcacttttagctggCCAATACTccaaacaggcttacaatgctagtgatggggCATAGTGATGCCCATccaaagaaatcacttaaactcaaagtagctctacactttattggtagaattctgaggtctatttaaaacaaggcactgagaacttaaAGTACACAGATAGTGCCTCTACCACTGCAGTGTGCTGCTAGTTTAAGCTTATTAATGGTGTTAGAACTTGGctatatgaaaaaaaactatataaagttaCTATAGCCATAGTCCATTTTATACTGGAGTTCACCTTTGCATTGCAAAATTCTACAGAAGGTCCCTCTTAGCATTAGCCATTTAATACAGTCTAGACAGTAGCCTGGTTCATGTATGCTGGTAGCCTAGATGTAAATGTACAAAGCAGTTCAATATTGTTCAACTTATTACTGTATGCTATCTAAAACATGCactttttattcaaataaaagaGTACTGACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46770 lncRNA downstream 88998 5887038 ~ 5891991 (-) True G34765
TU46759 lncRNA downstream 113057 5862457 ~ 5867932 (-) True G34760
TU46707 lncRNA downstream 299050 5677418 ~ 5681939 (-) True G34719
TU46700 lncRNA downstream 321085 5659024 ~ 5659904 (-) True G34713
TU46695 lncRNA downstream 335884 5644906 ~ 5645105 (-) True G34708
TU46809 lncRNA upstream 4333 6042925 ~ 6043439 (-) True G34791
TU46833 lncRNA upstream 10414 6049006 ~ 6052438 (-) False ablim1
TU46866 lncRNA upstream 110638 6149230 ~ 6152861 (-) True G34829
TU47029 lncRNA upstream 321319 6359911 ~ 6360378 (-) True G34939
TU47030 lncRNA upstream 328188 6366780 ~ 6368106 (-) False LOC103026268
XM_022668970.1 mRNA downstream 46295 5928561 ~ 5934694 (-) False LOC103043680
XM_022668969.1 mRNA downstream 46299 5928561 ~ 5934690 (-) False LOC103043680
XM_022668968.1 mRNA downstream 46299 5928561 ~ 5934690 (-) True LOC103043680
XM_007259261.3 mRNA downstream 52835 5903588 ~ 5928154 (-) True ccdc186
XM_007259256.3 mRNA downstream 128181 5842978 ~ 5852808 (-) True dclre1a
XM_015608376.2 mRNA upstream 10409 6049001 ~ 6147311 (-) True ablim1
XM_022668995.1 mRNA upstream 10409 6049001 ~ 6121680 (-) False ablim1
XM_022669001.1 mRNA upstream 10409 6049001 ~ 6121680 (-) False ablim1
XM_022668979.1 mRNA upstream 10409 6049001 ~ 6121680 (-) False ablim1
XM_022668990.1 mRNA upstream 10409 6049001 ~ 6121679 (-) False ablim1
TU46775 other downstream 41589 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 52835 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 618504 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2097520 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2191797 3783408 ~ 3789192 (-) False prr15l
TU47031 other upstream 426776 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 498429 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 581088 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2886236 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 3165978 9204570 ~ 9205911 (-) True G35512

Expression Profile