RNA id: XM_007259271.3


Basic Information

Item Value
RNA id XM_007259271.3
length 3434
RNA type mRNA
GC content 0.45
exon number 11
gene id pgs1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6153694 ~ 6178101 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGAGTGCTAGGGAAAGATGGCGGCCCCCATGACCTGGAGGAGACTTGTGTACTCTGTGTACACACCGGCTCTGTCCGGGGTTTTCAGCAGAATCTCGGACCGGTTATTCAGGACGCAAGACAGGAGGAGAGGGTCCTCTCTGCTTCTCCTGGCTCCTCTCCTGGCAGAGACTGACACCACACCTGCCTCCTCAAGGCCTCCAGGCTCTACAGGAGCTGCAGGACTACACTCCCGCTTCCACTGGATCGCTGAACATGTGCCGGCCTTCAGGGTGCCCGGGGGCCGCATTCACATCCTTCACTCTCCGGATGAGTTCTATCAGGCGATGAAGgCACGTATCAAGACTGCCAAGCGACGAGTGGTGATGGCGTCCTTGTATCTCGGCACAGGACCACTGGAGCAAGATCTTGTGAATTGTATGGAAGAGGCTCTTGAGCGCTCTCAGGAAGACACTGCTGCTAATTTGAAAGTCTCTATACTGCTAGACTACACCAGAGGATCTAGAGgAAAGAACAATTCTCGCACCATGCTGTTGCCTTTGCTGCAGCGTTTCCCAGAGCAGATGAGAGTATGCCTGTATCACACTCCAGACCTGCGTGGGTTGCTGCGCCTTTTAGTCCCTGAGCGCTTCAATGAGACCATTGGCGTGCAGCATATCAAAGTTTATCTTTTTGATGACAGTCTGATCATCAGTGGGGCAAATCTCAGCGATTCATACTTCACTAACCGGCAGGATCGTTACGTGCTGTTGGAGGGTTGCAGAGAGGTTGCAGATTTCTTCGCTGAGCTCGTGCGAGCTGTGAGTGATGTCTCATTACAGCTTGAGTCGGATGACAGCGTCCACACAAAGGAGGGAATGGTACATCCTTACAAAGGTAATCGCACAGACTTCTCAACCTCAGCACAAAAGCAGATCATGGAGGTGATTAACACAGCCAGGGTCCAGCAGAACCTACAGGATTTAGAACATTCACAAGATTCAGACCTGGAGCTGGAATCTGGAGAGGAGCGCAGCGACACCTGGGTCTTCCCCCTCGTCCAGATGAAGCCTTTGGGCATTCGGCTGGATGAGGAGGTAACACAGAGACTGCTGTGGGAGGCGGGTGGAGACTCCACAGTCTACTTGACCTCAGGTTACTTTAATCTGACGCGAACCTACATGAGACTAGTGCTGGGAGCTGCGGCAGATTACCGCATCCTCATGGCCTCACCAGAGGTCAACGGATTCTTCGGGGCCAAAGGGGTGGCAGGGGCCATTCCTGAAGCATACATTCACATTGCAGGCCAGTTCTACAGACAGgtgtGTGATCTAGGTCAGCAGAGTCGCATCCACCTACAGGAGTATCATCGGCCTGACTGGACTTTCCATGCCAAAGGACTGTGGTACTACCTGCAAGGAAACAGTCGTCCCTGCCTTACTCTTATTGGCTCTCCCAATTTTGGTTACCGCTCTGTGCACAGGGACATAGAGGCTCAGATTGCTATTGTGACTGAGAATGAGGAGCTCCAGGCCAACCTGCAGCAGGAGCAGGAAATGTTGTACAAGAGGTCCACAGAAGTGTCAAGCTCCACTTTCAAGCAGCCCGACCGTCATGTTAAGTTATGGGTGAAGTTGGTCACTCCTTTCATTAAGAACTTCTTCTGAGGAGCTACGTGTCTGAGTTTCTGAACTTCTTACAATCCATTCAAGttttcagGTTAAAACTCCAGATGAAGATTGGCCCTTGCATGCAGTTCTTGTACAGAGCACCCGTATACATTCTTGGTCTCCTGACGTTCCACTGGGATAGCTTTGATGAAGAAGATGACTGCCATAGCAGGTGTCGAGACCTTTAGATAAGCATCAGCAGTTGCACTGGCTTGGGTGtcccattgagcttctgtgaaAATGTTAATTCAGCATTTCACTTTATTGCCACCGTGTTTTATACCAAAGAGCGCACAGTCCAGGATCCAGTCCAGAGAGGCTGCAGCACCGTCACCTTGCTCTACCAGGTAGGGCAGGGTAAACACTGAGGCTTTGTTCAGACTGCatgcttaaatcagatttttggcatatctagattgtatccaggtGGTAGTGATAGAAGTGAGGGGGACCAAGAAGAGCCCCAAGAGGTCAGATGTTAATTACTAAAGCTGACCTTGTTACCATAGCAACCTCTGCAGAGGCATTTGTGATGTCCAGACATGCAAATCCGATCTGATCACTTGCAAATAACAGAGCAGACAGCCACTtcaacagatctgatttggGAAATGAATCTGATTTGCATGCAGCCTGAATGTAGACTGTGATGTGTTCAGGCATTTCAGGACTGGGTTTGGATTATTCTGGCTTTACAGAAATGATGGCACTCCACTGTGTGTCAAAGTTGtaatcaaacacaaacacaagtgTTGTCTGTAATTCAGCATGTCTTTGGCAGTGTGAGTGAAGAGAACTTCACTCAAAATTTTATAGAATATTCctttaatgcaaaaataaaggaaaatatttGTGAAATAATAAGTGATGTGAGAAATGAAGGCTCTGTTGAGCTGCcccaattatttgttttttttttacttgtttttatagACATTTGGTTGCTATCTGTTTAATATACCAGAGATCAGCAGTGTCTCGGTCTGTATGTATATCTTGCAAACATGAGAACTGAGAACTGTGCAATTTTGTTCAATTCTCAAGTTACTATATCCAGAAAAGAGCCACTGCGTTCTGATATAATCCTCTGTTCCACAAGATGAGAAACTTTGTGAAGCCAAAAGTGAATTATTCTAGAGGGCCTTAGCAAAcgtttattcttttattcagtGACAGGGTTCTGCCTTCCACTCCTGAAGGCCTAAACTGTGGaacaaaaatacaggaatttaACCATTAATATTAACAGAAAGGTGACACTGTACCATGTTCATGACTAAGCTGTGTTTTCTAAGTGTGTAAAGAATCATTTCACTAGCAGTTtacaatgtttaaatattttgtattattattattattattatttgcattatttaaaaaacttctgtatttaacatttgcctgtttgtttaaaaactggAACCAGTACAAGATCTGTTTTAAATCTCATTTCATTTAGCTTTTTATGTGTTGAAAGAGCTGTTAATGTTAAGATGAATAATAAGATGAATGTGTGTTTGGAAGGAGACCAATATGTACGATACAGAAGTGCCGGTGAGTCGGGGTTTGAATTGATACTATAGTCAGTCTATAGTAGGTGGTTTAATGTTCTACTTGAAGCCTTGTTTTAGGCCAACTGGTCAAAGATCACGAGCCTTGAAAGACAGATGTGTCCTTCTCCATGTAGTATAAGAATAATATGTActcatttttctgtgttttttattgtgttgtgaAGGCAACGTTTTTGACAGAAAATAAAGCTTTAAGTGTTATATGATGGA

Function

GO: NA

KEGG:

id description
K00995 pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46866 lncRNA downstream 833 6149230 ~ 6152861 (-) True G34829
TU46833 lncRNA downstream 101256 6049006 ~ 6052438 (-) False ablim1
TU46809 lncRNA downstream 110255 6042925 ~ 6043439 (-) True G34791
TU46774 lncRNA downstream 141025 5927689 ~ 6012669 (-) True G34769
TU46770 lncRNA downstream 261703 5887038 ~ 5891991 (-) True G34765
TU47029 lncRNA upstream 181810 6359911 ~ 6360378 (-) True G34939
TU47030 lncRNA upstream 188679 6366780 ~ 6368106 (-) False LOC103026268
TU47047 lncRNA upstream 365072 6543173 ~ 6546514 (-) False ndufaf8
TU47088 lncRNA upstream 497478 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 502250 6680351 ~ 6680909 (-) True G34988
XM_015608376.2 mRNA downstream 6383 6049001 ~ 6147311 (-) True ablim1
XM_022668995.1 mRNA downstream 32014 6049001 ~ 6121680 (-) False ablim1
XM_022669001.1 mRNA downstream 32014 6049001 ~ 6121680 (-) False ablim1
XM_022668979.1 mRNA downstream 32014 6049001 ~ 6121680 (-) False ablim1
XM_015608377.2 mRNA downstream 32014 6050568 ~ 6121680 (-) False ablim1
XM_007259293.3 mRNA upstream 78303 6256404 ~ 6266677 (-) True tmem235
XM_007259294.2 mRNA upstream 90300 6268401 ~ 6270943 (-) True birc5
XM_007259296.3 mRNA upstream 95770 6273871 ~ 6287633 (-) True LOC103025956
XM_022669012.1 mRNA upstream 188583 6366684 ~ 6513584 (-) False LOC103026268
XM_007259297.3 mRNA upstream 188583 6366684 ~ 6477290 (-) True LOC103026268
TU46775 other downstream 214294 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 225540 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 791209 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2270225 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2364502 3783408 ~ 3789192 (-) False prr15l
TU47031 other upstream 287267 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 358920 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 441579 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2746727 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 3026469 9204570 ~ 9205911 (-) True G35512

Expression Profile