Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007259273.3 |
| length | 1324 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 8 |
| gene id | trub1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035900.1 |
| NCBI id | CM008303.1 |
| chromosome length | 25652880 |
| location | 6149287 ~ 6152869 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0006396 | RNA processing | biological_process |
| GO:0001522 | pseudouridine synthesis | biological_process |
| GO:0003723 | RNA binding | molecular_function |
| GO:0009982 | pseudouridine synthase activity | molecular_function |
| id | description |
|---|---|
| K03177 | truB, PUS4, TRUB1; tRNA pseudouridine55 synthase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46808 | lncRNA | upstream | 105947 | 6042846 ~ 6043340 (+) | True | G34790 |
| TU46622 | lncRNA | upstream | 182093 | 5966688 ~ 5967194 (+) | True | G34657 |
| TU46601 | lncRNA | upstream | 232885 | 5914241 ~ 5916402 (+) | True | G34644 |
| TU46590 | lncRNA | upstream | 301362 | 5844902 ~ 5847925 (+) | True | G34636 |
| TU46539 | lncRNA | upstream | 355469 | 5788758 ~ 5793818 (+) | True | G34602 |
| TU46881 | lncRNA | downstream | 102737 | 6255606 ~ 6258050 (+) | True | LOC103045604 |
| TU46883 | lncRNA | downstream | 105684 | 6258553 ~ 6258814 (+) | True | G34841 |
| TU46884 | lncRNA | downstream | 113440 | 6266309 ~ 6266668 (+) | True | G34842 |
| TU46879 | lncRNA | downstream | 115559 | 6268428 ~ 6270954 (+) | True | G34837 |
| TU46898 | lncRNA | downstream | 132680 | 6285549 ~ 6287415 (+) | True | G34855 |
| XM_022668974.1 | mRNA | upstream | 146757 | 6000006 ~ 6002530 (+) | True | LOC111192358 |
| XM_007259270.3 | mRNA | upstream | 168070 | 5949544 ~ 5981217 (+) | True | vwa2 |
| XM_022668965.1 | mRNA | upstream | 200658 | 5904106 ~ 5948629 (+) | False | tdrd1 |
| XM_007259292.3 | mRNA | downstream | 27955 | 6180824 ~ 6185239 (+) | True | LOC103024806 |
| XM_022669011.1 | mRNA | downstream | 93777 | 6246646 ~ 6255637 (+) | False | LOC103045604 |
| XM_007259300.3 | mRNA | downstream | 361634 | 6514503 ~ 6541364 (+) | True | slc38a10 |
| XM_022669014.1 | mRNA | downstream | 361634 | 6514503 ~ 6541364 (+) | False | slc38a10 |
| XM_007259299.3 | mRNA | downstream | 361634 | 6514503 ~ 6541364 (+) | False | slc38a10 |
| TU46176 | other | upstream | 1971204 | 4171051 ~ 4178083 (+) | False | G34309 |
| TU45414 | other | upstream | 4092413 | 2050798 ~ 2056874 (+) | True | amz2 |
| trnaq-cug_1 | other | upstream | 4311711 | 1837505 ~ 1837576 (+) | True | trnaq-cug_1 |
| TU45181 | other | upstream | 4761268 | 1369202 ~ 1388019 (+) | True | LOC111192342 |
| trnam-cau_18 | other | upstream | 5027415 | 1121801 ~ 1121872 (+) | True | trnam-cau_18 |
| XR_002649861.1 | other | downstream | 466801 | 6619670 ~ 6663587 (+) | False | LOC103029551 |
| XR_455629.3 | other | downstream | 466802 | 6619671 ~ 6661251 (+) | False | LOC103029551 |
| TU47021 | other | downstream | 578085 | 6730954 ~ 6731424 (+) | True | G34931 |
| TU47135 | other | downstream | 749548 | 6902417 ~ 6903997 (+) | True | G35021 |
| TU48089 | other | downstream | 4320505 | 10473374 ~ 10474792 (+) | False | G35744 |
