RNA id: XM_007259292.3


Basic Information

Item Value
RNA id XM_007259292.3
length 2591
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC103024806
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6180824 ~ 6185239 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGCCTGTTAGAAAATATCAGTCTGCTCTCAGTCGGTGAAGAGAACAGTACTTCTACTACCCCTCCTCGTCCTGGGGGGAGATGTGAGAGGGGTTTCCAGCTCACAGAGTCCAAACTGAGAGACACAGCTAGCTAACAGTACAACAGTAACACGACTCCATCACTTTTCTACCGCCGTTTTTCACCGTTTAACGGATCTCAGACGGAGCTCTACAGCCCCTGGAACCCTAACTTGGAGACTGGGCTCGGAAAAGACTTTCAAGCTGCATTCCTCACCCATTGAGCCATTATTGCTTCTGGATGTTGAGGAGGCAGTGGAGCTCTGGGTTTTGTGTTGCTGCCCCCCGCTGCACGCGCGCCCTGGCTGGGACGGCTCCTCGGCCCTGGACCCTGAGCCCCAGCAGCGGCTGGGCGGGACAGGGCGCAGGCAGAGCGCCATGGTAACGCACAGCAGGTTTGACGGCGCCATGAGCAGCAGCCCCTATCAAGGCGGAGTGCGCCTGTCCCCCCACCGCTTCAAGACCTTCAGCTCCGGGGCACAGTACGAGATGGTGCTGGCGGCCGTGCACAAACTGAAGGAGAGTGGCTTCTACTGGAACGCCGTGAGTGGCAAGGAGGCCAGCTCCCTGCTGAGCGAGCAGCCCCCAGGCACCTTCCTGGTACGAGACAGCTCGGACCACCACCACTTCTTCACCCTGAGTGTGAAGACGGCCACGGGCACCAAGAACTTGCGCATCCAGTGCGATGCCTGCTCCTTCTTCCTGCAGACAGACCCCCGGAGCTCGCAGGCTGTGCCACGGTTTGATTGTGTCTTGAAACTCATACATCATTACATGCCCTGTGCTCGAGGAACAGACGCAACCACATCTGCAGTCCAGGCTGAAGGGGAAAGCGTTGATTGCAGCAGTGGAGTGGATGGGAGTGCATACTACATCTACTCTGGAGAGGAGAAGATTCCTTTGCAGCTGCTCCGGCCCTTGGCCTCCGGCATGTCCAGCCTGCAGCACCTCTGCCGCAGGACACTTAACGGACACATAGATGTATCTGCTAAGCGCGATCAGCTGCCTCAGACGCTTCAAGAGTTCCTCCAGGACTATGATGCACCCATCTAAATAGCCAGCGCGTGCTGCTGCAGACCATATGTGCAGAACTGTGAGGGCAATGATGGAATAGACCAGCAAAAGCCCATGAAAAGATCATGGAGAGCATTTGAGCAGTGCTAAAAGCCCTAGAGTTTAATAATAAgggtgtaagtacattgctccAAAAAGCTCTTGGCATCTATCAGTATTGCAGGCCGGCCGTGGCCTACTGTGCCTTTGACCTCTGTAGTGTAAACTGTGGGCATTGGGTTGCTGTGTGTGATGGACACACGGACAGCACAAGTGTGTATGAACTGTTGAACTGACAGCAGAGGAGTCATGGACATGAGTGAAAACAGATTGTACGGTCGTCGTCTTATAGCCCCCAGCGTTTTTTGTTCTCAGATTGGTTTTGGAAACTCATACCCTGTTGAAGATCAATGTGACAGGATGGGTAGTACAAGAGTTAAGTGTGCTGCTATGGCTGAGTTCCAGCCTTCTGCCATAGGAAAAGCTCCCGCACACCTTTTCATCCCTCGTTAACATTTTGACTCTGCTAGAAGCAGACCTCTGGCTGTCTGTGTTTGAGGGAATGCACAGAGCCGGGTGTTTGCAATGACATATACGTTTCCACTGGGGTTTGCCAAGCATAATCGCCTCATGAGTAGGCACGGTGAAGTGAACACAACTACTACTCACTACAGACACCGCTGTGTCAACAGTGGCCACTACGTGGGGTCACAACACAAGACTGATGTTTCAAAATGCATCAATATCGAAGGATCAAAGCAGACAGGAGAGGCCTGTTACAACAGGCGATTTCAGCCTCTTACCTTACACTTCTCTCTGAAGGAAAACTCGGTGGACTGTTGTAACTTTGTTTTCGACAGGAACCAAGgtaaacattttttagttttgctGGAAAATGGCAGACAATTCTAGAACAACACGCTGCTGTTGAAATTATAATACAACACAAACTTCCAAGAGCTGACAGTTCACATACTGTGAAGCAGAGCCAAGCACAGTATGCAAGACGCTTACTTACAGGTCCTGGAGTTTGACATGGAGGATTGTGTTCCTCTAAAAGCAGAGGCGTTCgttctgtactgtatgtgctaAGAAGTAATCAGACTTGCCTCATAACCCTCATCCAATAACAATGACGTAGTGTTTCTTTCAGCAGGACATGCTCTCTACAATTAAATGAATGTATTGTGAGTCAATGTAAGGGCTTATGGTTCCCCTTGTAGTTCttgctttttttgtactttgtcCAACAGCGACAATGTTTACATGTGTCACCACAAGAGGACAACATGTTTTGTACTCTGTCTTTTATAAAGATGCGGGATCTTAAGGTCTAGTCTAATGACCTACAGTGCAAGCTTGAATATCTGAAAACAAAggcattacaataaaaaatgcagCAAGGAACTTtgcacatatttatatttataaagtatttcaataatttatattaaagagTACTATTTTTACAAAATCGA

Function

GO:

id name namespace
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04696 SOCS3, CIS3; suppressor of cytokine signaling 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46808 lncRNA upstream 137484 6042846 ~ 6043340 (+) True G34790
TU46622 lncRNA upstream 213630 5966688 ~ 5967194 (+) True G34657
TU46601 lncRNA upstream 264422 5914241 ~ 5916402 (+) True G34644
TU46590 lncRNA upstream 332899 5844902 ~ 5847925 (+) True G34636
TU46539 lncRNA upstream 387006 5788758 ~ 5793818 (+) True G34602
TU46881 lncRNA downstream 70367 6255606 ~ 6258050 (+) True LOC103045604
TU46883 lncRNA downstream 73314 6258553 ~ 6258814 (+) True G34841
TU46884 lncRNA downstream 81070 6266309 ~ 6266668 (+) True G34842
TU46879 lncRNA downstream 83189 6268428 ~ 6270954 (+) True G34837
TU46898 lncRNA downstream 100310 6285549 ~ 6287415 (+) True G34855
XM_007259273.3 mRNA upstream 27955 6149287 ~ 6152869 (+) True trub1
XM_022668974.1 mRNA upstream 178294 6000006 ~ 6002530 (+) True LOC111192358
XM_007259270.3 mRNA upstream 199607 5949544 ~ 5981217 (+) True vwa2
XM_007259262.3 mRNA upstream 232195 5935995 ~ 5948629 (+) True tdrd1
XM_022668966.1 mRNA upstream 232195 5935995 ~ 5948629 (+) False tdrd1
XM_022669011.1 mRNA downstream 61407 6246646 ~ 6255637 (+) False LOC103045604
XM_007259300.3 mRNA downstream 329264 6514503 ~ 6541364 (+) True slc38a10
XM_022669014.1 mRNA downstream 329264 6514503 ~ 6541364 (+) False slc38a10
XM_007259299.3 mRNA downstream 329264 6514503 ~ 6541364 (+) False slc38a10
XM_022669015.1 mRNA downstream 332473 6517712 ~ 6541364 (+) False slc38a10
TU46176 other upstream 2002741 4171051 ~ 4178083 (+) False G34309
TU45414 other upstream 4123950 2050798 ~ 2056874 (+) True amz2
trnaq-cug_1 other upstream 4343248 1837505 ~ 1837576 (+) True trnaq-cug_1
TU45181 other upstream 4792805 1369202 ~ 1388019 (+) True LOC111192342
trnam-cau_18 other upstream 5058952 1121801 ~ 1121872 (+) True trnam-cau_18
XR_002649861.1 other downstream 434431 6619670 ~ 6663587 (+) False LOC103029551
XR_455629.3 other downstream 434432 6619671 ~ 6661251 (+) False LOC103029551
TU47021 other downstream 545715 6730954 ~ 6731424 (+) True G34931
TU47135 other downstream 717178 6902417 ~ 6903997 (+) True G35021
TU48089 other downstream 4288135 10473374 ~ 10474792 (+) False G35744

Expression Profile