RNA id: XM_007259296.3


Basic Information

Item Value
RNA id XM_007259296.3
length 2888
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103025956
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6273871 ~ 6287633 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTGTAAACACACATATGTGTAGAACCCCCTGCAAAGATGAACCACAGAGCTTGGAATCAGAGAAGCTATGTAACTTTATACCAAGCGTGTTCTGGAAAACTGATCCCTTAGTCAGGCCACTGTCGCTGGGGGAGGGCTCTTGTTACCCAGCTTTGTGTCCCAACGCCATCAGCAAAGAGCTGAAGACTGGGGCAGTGGATAAAGACACAGCGACCACAGAAAGGGTGGATTACAGGGCCTCAGAAAAGGGTTTATGGAATAAGACCAGCAAGGAAGAGGAAAAAGgctgaaaaaatacaaatcaaggaaaaagaggaaaagaaaaagctgGTGCGTAGTGCATGTTTTGCTGCAAGTTTTATTGCATTGTGCAGATGCACTATCAGTGCTAGATAGCATTTGTGCTAGTAACGGCCTTAATTAAATGGCCATCCTTCTGGGAACAGAGCATGTCTAAGTCTTGCTAAGGGCCTGCCTTTGGAGATCTTGTAGAGCACCCGTTTCCGTTCAGCGATGTCCCTGTTTAAAGGACCCACCAATCAAACTCAAGCCCAATCAGGTGGAAAACTAAGATATGAATGAAGGAACAGCACtgagaagaggaaaaagaggcACAGAAATTAATCAACTAGACAGGAAAGAAGAGACAAGAGGAGCAGCAAGAGGGGAGTCACGCTGTGCTGCTCGGCCTTGGACAGCATCACTTTAGGAGATCAGTTTTTTGGTAATCCCACAGGTAGCCActggaaagacagacagacacagaccaGACTAAGATTGGTGAGGTGAAACGAGCAATAGAACATAGAGCAATAGGAGCACGGGAGTAGGAAAAAGGGGAGTGAGAAAAGCAGGGAAGAGAAAGAACCGGTGGGATCAAGGTGACGTCAACAGCTCACTGGATTGAGGTGTTGAGTCCTGCTGATTTTAATCTGAGCTGATTaggaaacagaagaaaaaactcAGAGCCTCAGCAAGCTGTCTGGGGAGCAAGACAAGAGAAGTCTTTTTTTACTTAGAGAAGAGGCCAAGGACCTgaagaaaacactgaaagaagACCGACAAATCCAAGAACCAAACTAATAAGAAAAGGCAGATATTTATCAGAAGatttacaagaaaaaaagagacaccAGGCAAGTAAATCAGGAAGCTTGTTGTTTTTTGAAAACTTCATCCTTTGTGGGAAATATATCGCTTCTGTTAATCAGTTTCATATCTGCTCCTGCAATCTTCTCCTGCATTCACCTGAGTGGACGACAATGCCCACAAATGGCAATAAAGCCCTCAAGCTCCAATTTGGGCTGATTAACTTTGAGAGCCGTTACTTAACTGCAGAGGCATTTGGGTTCAAAGTGAACGCTTCAGCACCAAGTCTCAAGAAAAAGCAGATCTGGACACTTGAGCAAGATGAGAAAGATGGGCAGGTCGTGTACCTGCGGAGCCACTTGGGCCGCTACCTGGCATCTGATAAAGATGGCAAGGTGAGTTGCGAGGCTGAGTCACAAGAGAGCGACTGCAGGTTCCTAATTGTCGCACAGTCAGACGGTCGCTGGGCCCTGCAGTCCGAGCCACATCTGCGCTTTTTTGGAGGGTCAAAAGACTATCTGTCCTGCTTTGCTCAGACCATTGGTGAAGCAGAGCTGTGGGCCATGCACCTGGCCCTGCACCCACAAGCAAACTTGCTAAGCGTAGCTCGCAAGCGCTATGCCCACCTGTCTGCACCTGAGGGTGAGATAGCTGTGGACAGCAACATCCCGTGGGGCGTCGATGCTCTCCTAACCCTGGTTTACGTAGATGGCAAATACTGCCTAAAGACCTGTGACAGCCGGTTTCTAAGCAGTGATGGGAAGCTGTCTTTTGAAAATGGTCGCGGAACAGGATATACCCTGGAACTGAAATCTGGTAAATTAGCTTTCAAGGACTGTGAAGGAAAGTACTTGAGCCCCATGGGGCCAACAGGCACCTTACGTTCAGGACGCTGCTCCAAACCAGGCAAGGATGAGTTGTTTGATCTGGAAGAAAGCCATCCACAGGTGGTGTTTCAGGCCGCCAATAACAGATTTGTCTCAATCCGACAAGGCGTGAGTGTCTCAGCGAATCAGGAGGATGAAACAGACATGGAGACATTTCAAATGGAGATCGATAAAGACAGCAAAAAATGTAAGTTCAGGACAAATGAAGGCAACTACTGGACGCTTGTAGCTCACGGAGGCATTCAGTCGACAGCCAGAGAAGCAGGCGCCAACACCATGTTTGACATCGTGTGGCTCGGACGGAGGGTGGCGCTACGAGCTAACAATGGGAAATATGTGTGCACTAAGAAGAATGGACAGCTCGCTGCAGTCAGCGACTCAGTAGGGGAGGATGAGCAAATGATTCTAAAGCTGATCAACAGGCCCATCCTAATCCTACGAGGGGAGAACGGATACGTGTGCCACCACAAGAATTCAAACACACTGGACGCCAATCGCTCAGTTTATGACATCTTCACATTAGGCTTCAGTGACGGAGCATATCATATTaaagGTGCAGGAGGAAGGTTCTGGTATGTTTCCAGCAGTGGCATGGTGTGCTCTGATGGCGACACACCTGAAGATTTCTGCTTTGAGTTCTTAGAACATGGGCGAATTGCAATAAGGGGCAAGAATGGCAAGTATCTGCGCGGAGACCAAGGGGGCACACTGAAAAGTGATGGAGAGAATGCTGATGGCTCATCTCTCTGGGAATATTGACACCTAGTGGCCATCTTGGATACTGTCATTCTCTTGCCACCTGAAACTTTTGGACTTGCTATGGAAGCAGTGGAGGATGCAgtatgtgtgaatgtgcatGTTTGGAAACTGAGCAATTTTGtgggtaaataataaaatcaattttCAGTCA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K17455 FSCN2; fascin2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46866 lncRNA downstream 121010 6149230 ~ 6152861 (-) True G34829
TU46833 lncRNA downstream 221433 6049006 ~ 6052438 (-) False ablim1
TU46809 lncRNA downstream 230432 6042925 ~ 6043439 (-) True G34791
TU46774 lncRNA downstream 261202 5927689 ~ 6012669 (-) True G34769
TU46770 lncRNA downstream 381880 5887038 ~ 5891991 (-) True G34765
TU47029 lncRNA upstream 72278 6359911 ~ 6360378 (-) True G34939
TU47030 lncRNA upstream 79147 6366780 ~ 6368106 (-) False LOC103026268
TU47047 lncRNA upstream 255540 6543173 ~ 6546514 (-) False ndufaf8
TU47088 lncRNA upstream 387946 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 392718 6680351 ~ 6680909 (-) True G34988
XM_007259294.2 mRNA downstream 2928 6268401 ~ 6270943 (-) True birc5
XM_007259293.3 mRNA downstream 7194 6256404 ~ 6266677 (-) True tmem235
XM_022669009.1 mRNA downstream 95770 6153694 ~ 6178101 (-) False pgs1
XM_007259271.3 mRNA downstream 95770 6153694 ~ 6178101 (-) True pgs1
XM_022669010.1 mRNA downstream 95770 6157497 ~ 6178101 (-) False pgs1
XM_022669012.1 mRNA upstream 79051 6366684 ~ 6513584 (-) False LOC103026268
XM_007259297.3 mRNA upstream 79051 6366684 ~ 6477290 (-) True LOC103026268
XM_015608380.2 mRNA upstream 79051 6366684 ~ 6469983 (-) False LOC103026268
XM_015608363.2 mRNA upstream 255511 6543144 ~ 6546582 (-) True ndufaf8
XM_022669016.1 mRNA upstream 255511 6543144 ~ 6546559 (-) False ndufaf8
TU46775 other downstream 334471 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 345717 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 911386 5257882 ~ 5362485 (-) False tcf7l2
TU46045 other downstream 2390402 3836621 ~ 3883469 (-) True G34214
TU45989 other downstream 2484679 3783408 ~ 3789192 (-) False prr15l
TU47031 other upstream 177735 6465368 ~ 6513701 (-) False LOC103026268
TU47043 other upstream 249388 6537021 ~ 6541364 (-) True G34953
TU47076 other upstream 332047 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2637195 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2916937 9204570 ~ 9205911 (-) True G35512

Expression Profile