RNA id: XM_007259305.3


Basic Information

Item Value
RNA id XM_007259305.3
length 5240
RNA type mRNA
GC content 0.43
exon number 11
gene id bicral
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 6567389 ~ 6578059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTGTGTACACTGATTTACAGCACCGTGCGTTCCACAGTGTATTAAAAGGTCATAATCGCCCTCGTTTACAGCTGGATATGTGTTGCTGTGCCTGGCTGTGTGTCCGAGGTGCTGCTCTGCTCCTGAGAGGGTCGCCTGTAATAATGCACTACAGTCGGTGGTGGTTTCCCTTGGGCTGCAGATGCTGCCTTCTGCTGGAGCGGCACTGCTCCGCCGGCCCGTGCAGAGATGGCGAGGAAACCCCGTTGACAAGGCACTGCTTTTTCATGACGGTGTCATGGATGATGAAGACGATCGCCATCTTCTGGATTTTATAGGaaatgtgCCTGATTTGAATGACTGTCTTCATGGCTCCAGTAATAAATCGttagacGAGGATGACCTTGCAAACACAACATATGGGTCTGCAGGCTCCTTTTTTGCGAATGATACAGGCGGCTCAGACGATGGGCTTAAAGATGGGCACGGCCACCTGGAAGAGTTTGGTGAGAGTGGTGGAGCTGGACTTCAGCTGTCCAGCAGTCTTCAGTTCATTGAAGATGAACTTGAGGGAGATGTATCCCCCAGTGATCTTGATCTTGGTGGAGAGGACCAACCATTTGACATTCTTCAGAAGTCATTGCTGGAGGCAGATATTACAGAGCAGACATTGGCTCAAGAGGCCTTGTTGGACTCCCAGCCCACTATGGCCCCTGTCACTACCACCTACCCTCAACAGCTGGTCTCTGGGGGATTTGGTGGTGTTACAGGAGCTGGAGTAATGGCCCCATTGCCCCTTGCTGGGGCACAACCTCAGGCTTTTATCCAACAAGTTCCCCAGTTGCCACTGGCAAACGGACCAGCAGGACATATTCAGTTAGTGGGTTCATTTAATGGAGGTGCTCCATCTATGATGACTATTAACAGCCTAGAGCGACCTCAAATCCTTTTGAGGCCTGGAACAAATGCAATGACGAACAGTACTGGTCAGGGTGCAGCTTTCGGCCCTTCTGCACCTGGACAGGTGTCAGTTCCCTTCAATAAAGGTGCAATACCGTTGCAAAATATTATCATTCAAAGGGGCCCTGCACCACAGACATTTGTAAGGCCCATTCAGCCCAAGCCCCTTCAGACAGGTGGACAAGCTGTTTATAATATCACTAACATAGGAATCCAGCCCAACAGCACTACTGCTACTGCAAATCCAGCCAATATCGCATACACGGCCAATGGGTCTCCTCAGACATCCCAACAATTGAAAGTAGTAAGTCAAGGCACCAGCATTGTAGTGCATTCTCCACTAGGACAGCAAGGACAACCACAGACTCAGGGGCAGTTTTTACTACCCAGTTCCCTGGCACTCAGCACTGGCAACACTGTCCCTGGCTTCCAGGCAGTGAATGGCCAGGTTcttcaaacaaacacacaagtaGGTGACCCATCTTTAACTAGCACTACTACCTACTCCATCTTGACCAACCAGAATGCTGCAGTACAGATAATTTCTGGGCAGAATTTTGCAGCTGGGGGACAACTTCTAGTGAACCAAGGAATGGTTAATGCAAGTCAGATAGGGCAAGCCTCTCCCACAGCTGTAGTGCAGGTCTCCCAAAGGCCAGGTGTCGCAGGCAAAGTGTGGACTGCCAAAGCATCGCCCAGTCCAGCAGCTTTACAGACATCCCAGGGCCCAAGCCGTCTTACCATGGTTAACCCTGGGGCCCAGGCATTTCAGGCACACCAGCAGCTATCTGTCAACACAGGACCACGGCTTTTAGTACCTGTGGCCCAGAACACCACAAACTCTATAAATGTTGCCGGTCAAGagctgcagtgtgaaaaacagCAGGTGCCCCTCAACCAGGACTCAACATTATCAACACGGGCAGGGCAGACACAGCTGGTTAATCTTCTTGGTACCAAAGgtgtgaaaacgctaaCTCCTGCTAACCAGGATTCTGTCCTTACATCCACTCCGAAGAGACCTGCAACTCAGCAGCTCACTAGAGGAGGAATGATCCTCCAGCAGCTAAGAAGGGATCATACCGGAGTGATGTCTCCAGACCGTGCACCCTTTACATCACTGAATGATGTCATTGAAAGATTGCTTCCCTATCACGTGTTTCAAGGAGCACCACCTTGCGAGGAGGATTTCACCAAAGTGGATGAAGAATTTCAGGCAGCTGCTACACAAGTGCTGAAAAGAACACAAGCCATGGTGAACAAATACAGACGCTTGCTCATGGTGGAGGCAGAGCGGTTTAGCCCATCATCAGAAATAGTGATGATTGACAGGACCTTTAACCAAGAAGAGAGGAATACCCTGACCCAGGACAAACGAACGGTACTTGTAGATCCAGATGGCTTCCTAGAGGACTTCTGCTGTGGTCCTAAAAAGAAGACTTTAAGCTCAGGGGCTACAGATTCACTTCCCAACGAAGATTTCCCCAGTTTAATGGGGACATCTCCCTGCCAAGACATGACCTCTAATGAAGATAGTGATGAAGAGGGGAGGAGTATACATATGGAGCCGGCTTATAGGACAGAACCCTACTCGGCTTTTGAGGATCCAGGGGGTGGGAAACAGGTGGAACATGGAGGAACTTCCATTAAAATCACCATAGACTTGAAGAAAAAGCGGTCCAATAACTTTCTCTGCAGTAGCAGTGAATCCCACCAACACCTTCATCATGCTCCATACTCCACATCCCCCAGCCCCTCACACTCTGACCAGCTCTATCCTCCTGAACAGCCCATGTCCTCAGATCATGGTCATGTCTCGTTGGCCGACACAGACTCAGTGCTTGAAGCTGCAGTCAACAGCATATTAGAATGTTAGTGccatatttttctgtttgttggtttttgttttgtgtatgtgtgtgtttaacagatCAGATTTCACGCCATCACAGTGACTGTACGAGTTGAATCCAGTGATGTGTGAGATTGGAAAATGCACTTCAGCAGAACAAGGGTTTGTGCACAAAGTGTACATTTAGGGGAGTGGTAATTAAGGAAGAAAATAATTAGACTGATGGTAGTGATGCTATATTGTGCCTATCGTTCCAGAAATGTTCACGTTAGAAAGCCTTGTTTTACAATGCAAACACACGTACGCACACATGCTACGAGGCAGGGATGTCTGAAATGTTATAGAAAAACAAACTGATACTAAAATCTGTAGCTCTTACTAAACAATACTAAACAGCCCTATTCATAGATCTGCTTTTTCAAGCATCAGATTAGCCTATTCCACTGTCTGTAGAGGCTTCTGTATCTTATCCCATTATGTGATATGATTCTCACATAGCGTAGCTAGCATTGTGGGCTGGTGGGGGCTATTGTGTTCCTCAGTGACAATTTGCCAGTTACTTTAATCCTTTTAAGATGCACACAAGGTACCTAGTTTTAGACCTGCAACACCATAGATAGCCCACAATTGGCCAGCATCAATTGAAGTTGAGACCTTTTAACCATATTCACAAGTTAAGAGCCAAGAAAATTATAATCATTGTATTTTAGTCATTGTAGTTGAATACTAGGCTTCAGATGTGTCTGGAAAAGCAGCTTTTTTGCAGGACTTTCTTGCACTTACGCCTATACACCCTCTAATAAATAGCTTGTTGCAGTAGGTTTTAATCAAAAGAGGTTATACAGGcacgtttctgtgatttaaagcagTGGTATTCAACCTTGGCCACTATACAGTTGTGTGTTCTCCTGCCTTTACATTCCTGATTCAGTTCTAGAAGGGCTCAGATATTAGCTAATGAGTGAATCAGATGGAAACCCAAAACTGTACAGTCTAGCTAAGGGAATTGAGTGCCggtgtatttcttttatttagcatttagtTTTGTACCTTACAGGTATGTGACCTTCTCTCCTCATAAATAAGCTCATTCTGAGTGGTTTTGAGCAGGAGAAACTTTAAAGTCCTCAGATTGAGGGTACAAatgttactttttctttttaaatcttcCTTTTGTTTAAAGATTTTGTTTAGTCTGTGCTACTCCTAGCTCCTAAACTTCTATTGTGAACCGTACTGGGTGAGCCCACAGAGAGATACAGTCAAATACATTCAAAATTTACCTTGTGGATGGTGTCCCCTGCTGGTCAGGCTATGCTCTCTCAGTGACAGCTGGTTTTCAGTCTCAGTAGCAGCTAACATTTGAACATGCTCATATTCCTGTCTCTTTTAGATAGCCCTGTTTCCTGTAGCCAGTAGTTCTCTTATAGAGGAGTTTGAGAAAGATTGGCTTTTTGGTCTccacaaccttttttttttttttgttacctaAGAATATAGAGCAAAGCCATAATCTGTAATTTGAAATCTGgtttgtatgtatatttatatatttgcattaattctcaaaaataatgcaaaatcaTAAATTGTCAAGTCTTAGTATTTTCAGAAATAATACAACAAACTGTTTGGATCTGTTAACCGCATGAGTTTGATACAGGAAAACAATGgcttttagcattttaatgGTTTGTTGCACTGCAATTCTTTATTATGGCTTTATTCCTTTAAGCTTAAATCAGACAGTTTATTGGTAAGAGTCAGACCAGCgcaatgtttaatattatctgATGAAGGGTGATTTAAGTATATGTACATGATCACGCCAGCAGTTCAATGCTGAAATGTTGCTTGTTTGCATCTGGAACATCTGTTTTGTTAGTCATCAGCAACACTACACACCCATGTCTTTCCCAGCAGTTCAACCAAAAATAATGGACAGAATAAGTTCTATATATCTGTATAACTATTGCGTGAACTAAGCtgttgtttatatgtgtgtgtgtaagtgtgtgtgtggagggggttCTCTCTGAAGACCTTTTTGTTTGAAGGGCTTCTTTGCCTTAGGAGAGTGTATGTgaaaacacagatttaaatattttttattttactgtgtgaGTGTGGCCTTCACTTAAAACCCACTGGTTATAAAATGAAGTTATGTTCCCCAGTCTTTGAACATTTCATTTTCTACattattcagtttatttgtaacatttgttttatataaaaatgtaaaagtgaaacacaaaatatttataatttttgtaaagaaaagaatgcaaaaatgaaacaaaaaggaagttttttttttattattattttggttatACCACGTTTGTCAAATTGAAATATATGGTCAGCTCTTGATTACTCTCTTTTTGTTCACTACAGCAAAGATCAATCAATATTAAATTCATTTGGAATACAGTAGTACCTCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47047 lncRNA downstream 20875 6543173 ~ 6546514 (-) False ndufaf8
TU47030 lncRNA downstream 199283 6366780 ~ 6368106 (-) False LOC103026268
TU47029 lncRNA downstream 207011 6359911 ~ 6360378 (-) True G34939
TU46866 lncRNA downstream 414528 6149230 ~ 6152861 (-) True G34829
TU46833 lncRNA downstream 514951 6049006 ~ 6052438 (-) False ablim1
TU47088 lncRNA upstream 97520 6675579 ~ 6679954 (-) True G34987
TU47089 lncRNA upstream 102292 6680351 ~ 6680909 (-) True G34988
TU47093 lncRNA upstream 110231 6688290 ~ 6689610 (-) False LOC103030829
TU47094 lncRNA upstream 110282 6688341 ~ 6689610 (-) False LOC103030829
TU47099 lncRNA upstream 150802 6728861 ~ 6729154 (-) True G34997
XM_022669018.1 mRNA downstream 8554 6553333 ~ 6558835 (-) False LOC103027554
XM_022669017.1 mRNA downstream 9486 6553333 ~ 6557903 (-) True LOC103027554
XM_015608363.2 mRNA downstream 20807 6543144 ~ 6546582 (-) True ndufaf8
XM_022669016.1 mRNA downstream 20830 6543144 ~ 6546559 (-) False ndufaf8
XM_022669012.1 mRNA downstream 53805 6366684 ~ 6513584 (-) False LOC103026268
XM_007259313.3 mRNA upstream 110108 6688167 ~ 6696291 (-) True LOC103030829
XM_015608325.2 mRNA upstream 127009 6705068 ~ 6711220 (-) True LOC103045903
XM_007259315.3 mRNA upstream 133255 6711314 ~ 6715739 (-) True LOC103031455
XM_022669024.1 mRNA upstream 308650 6886709 ~ 6993101 (-) True LOC103032713
XM_022669023.1 mRNA upstream 308650 6886709 ~ 6992918 (-) False LOC103032713
TU47043 other downstream 26025 6537021 ~ 6541364 (-) True G34953
TU47031 other downstream 53688 6465368 ~ 6513701 (-) False LOC103026268
TU46775 other downstream 627989 5935835 ~ 5939400 (-) True G34770
XR_455628.3 other downstream 639235 5907974 ~ 5928154 (-) False ccdc186
XR_002649848.1 other downstream 1204904 5257882 ~ 5362485 (-) False tcf7l2
TU47076 other upstream 41621 6619680 ~ 6653585 (-) True G34981
TU47717 other upstream 2346769 8924828 ~ 8927717 (-) True G35429
TU47824 other upstream 2626511 9204570 ~ 9205911 (-) True G35512
TU47866 other upstream 2848016 9426075 ~ 9431164 (-) False rpl38
TU47867 other upstream 2848777 9426836 ~ 9431164 (-) False rpl38

Expression Profile